NAME
    App::RecordStream::Bio - A collection of record-handling tools related
    to biology

SYNOPSIS
        # Turn a FASTA into a CSV after filtering for sequence names containing the
        # words POL or GAG.
        recs-fromfasta --oneline < seqs.fasta           \
            | recs-grep '{{id}} =~ /\b(POL|GAG)\b/i'    \
            | recs-tocsv -k id,sequence
    
        # Filter gaps from sequences
        recs-fromfasta seqs.fasta \
            | recs-xform '{{seq}} =~ s/-//g' \
            | recs-tofasta > seqs-nogaps.fasta

DESCRIPTION
    App::RecordStream::Bio is a collection of record-handling tools related
    to biology built upon the excellent App::RecordStream.

    The operations themselves are written as classes, but you'll almost
    always use them via their command line wrappers within a larger record
    stream pipeline.

TOOLS
    recs-fromfasta

    recs-tofasta

AUTHOR
    Thomas Sibley <trsibley@uw.edu>

COPYRIGHT
    Copyright 2014- Mullins Lab, Department of Microbiology, University of
    Washington

LICENSE
    This library is free software; you can redistribute it and/or modify it
    under the same terms as Perl itself.

SEE ALSO
    App::RecordStream

