GeneMark.hmm (Version 2.2a)
Sequence name: Hvrn.contig8
Sequence length: 50124 bp
G+C content: 44.82%
Matrices file: /home/software/analysis/gene-prediction/genemark/matdir/osativa.mtx (Oryza sativa)
Thu Mar 22 10:25:00 2001

Predicted genes/exons

Gene Exon Strand Exon           Exon Range     Exon      Start/End
  #    #         Type                         Length       Frame
  1     1   -  Initial       1805      2176     372          3 1

  2     5   -  Terminal      3108      3229     122          3 2
  2     4   -  Internal      3869      4501     633          1 2
  2     3   -  Internal      4820      4888      69          1 2
  2     2   -  Internal      4981      5061      81          1 2
  2     1   -  Initial       5296      5656     361          1 1

  3     2   -  Terminal      7171      7288     118          3 3
  3     1   -  Initial       7540      7787     248          2 1

  4     1   +  Single       15431     15757     327          1 3

  5     1   +  Initial      17526     17696     171          1 3
  5     2   +  Internal     17772     17887     116          1 2
  5     3   +  Internal     18005     18074      70          3 3
  5     4   +  Internal     18456     18539      84          1 3
  5     5   +  Internal     18628     18714      87          1 3
  5     6   +  Internal     18807     18870      64          1 1
  5     7   +  Internal     19944     20038      95          2 3
  5     8   +  Internal     20139     20293     155          1 2
  5     9   +  Terminal     20779     20788      10          3 3

  6     5   -  Terminal     23000     23061      62          3 2
  6     4   -  Internal     23397     24101     705          1 2
  6     3   -  Internal     24708     24821     114          1 2
  6     2   -  Internal     25079     25356     278          1 3
  6     1   -  Initial      26970     26977       8          2 1

  7     3   -  Terminal     34218     34310      93          3 1
  7     2   -  Internal     35900     36301     402          3 1
  7     1   -  Initial      36392     36448      57          3 1

  8     1   +  Initial      36531     37064     534          1 3
  8     2   +  Terminal     37153     37161       9          1 3

  9     3   -  Terminal     37880     37917      38          3 2
  9     2   -  Internal     38938     39006      69          1 2
  9     1   -  Initial      39080     40214    1135          1 1

 10     2   -  Terminal     41091     41554     464          3 2
 10     1   -  Initial      41635     41713      79          1 1
 11     1   -  Single       41744     42061     318          3 1

 12     1   +  Initial      42171     42212      42          1 3
 12     2   +  Terminal     42432     42824     393          1 3

 13     7   -  Terminal     43798     43932     135          3 1
 13     6   -  Internal     44220     44297      78          3 1
 13     5   -  Internal     47595     47685      91          3 3
 13     4   -  Internal     48393     48526     134          2 1
 13     3   -  Internal     48643     49024     382          3 3
 13     2   -  Internal     49118     49149      32          2 1
 13     1   -  Initial      49457     49507      51          3 1

Predicted gene sequence(s):

>Hvrn.contig8|GeneMark.hmm|gene 1|124_aa
MEVAVKGYADASFDTDPDDSKSQTGYVFILNGGAVSWCSSKQSVVADSRCEAEYMAALEA
AKEGVWMKQFMTDLGVVSSALDPLTLLCDNTRAIALAKEPRFHNKTRHIKRRFNLIRDYV
EGED

>Hvrn.contig8|GeneMark.hmm|gene 2|421_aa
MAHAKVTLNFNTFLEKAKLKDDGSNFVDWARNLKLLLQAGKKDYVLNVALGDEPPAAADQ
DAKNAWLACKEDYSVVQCAVLYGLEPGLQRCFERHGAYEMFQELKFIFQKNARIERYETS
ESELRKEHQVLMVNKATSFKRSGKGKKGYGSLEAQLSKYLAGKKAAKEKSENNGCSISMS
NIFYGHAPNVRGLFILNLDSDNTHIHNIETKRVRVNNDSAMFLWHCRLGHIGVKRMKKLH
TDGLLESLDFDSLDTCEPCLMGKMTKTPFSGTMERASDLLEIIHTDVCGPMSAEARGGYR
YFLTFIDDLSRYGYVYLMKHKSETFEKFKQFQSEVENHRNKKIKFLRSDHGGEYLSFEFG
AHLRQCGIVSQLTPLGTPQRNEAMVGPDSNKWLEAMKSEIGSMYGNKVWTLEVLPEGRKA
I

>Hvrn.contig8|GeneMark.hmm|gene 3|121_aa
MVRRQRLIYRMTSFDYRKVFGHYRECTESDEWVPNVHREGPTHPGKPIGPRGGAPALGGL
VGQPKRALCAKDRKSKRKKKRKRSRYFTTTGAPSRCRRTHLLIRLACWIKKAEIIIELYV
C

>Hvrn.contig8|GeneMark.hmm|gene 4|108_aa
MFTTPKAGGGMYLCLSVGWGIVGRRRVMSGCGQGSEMGLVGLRTRRHWAKTGRGGAAGGA
ASIGDGPRRAADKATLGEDGPGRGVGRGGVGRRRVASGGGDREEDEWS

>Hvrn.contig8|GeneMark.hmm|gene 5|283_aa
MDAAVQEAKLLRQVNALIVAHLRDQNLTQAAAAVAAATMTPKADASLPNHLLRLVAKGLA
AEREEAARGGGAPPAFDSAGGGGLARPLGTSAVDFSVQNVRGPSKTFPKHETRHISDHKN
VARCAKFSPDGKHFATGSGDTSIKFFEVSKIKQTMLGDSKEGPGRPVVRTFYDHVQLLTQ
LLVHSTDKVSSFVTNIPGTDHPVAHLYDVNTFTCFLSANPQDSSAAINQVRYSGTGSMYV
TASKDGSLRIWDGVSAECVRPIIGAHGSVEATSAIFTKDESGF

>Hvrn.contig8|GeneMark.hmm|gene 6|388_aa
MGSVVFLEGSEGNLQALKDTLQAYQVASAQKVNLQKSSILDGKGCRDEDKGTLKQTIGID
SEALSERYSGLPTVVGRLKDGSFEYVRERSKGKVSGSVGKASVALQFPSSLCARVLKARY
FKECTIMNTTCPNAMFWKVLSSEKWVPVAIPPVSEGPHGELASWLLRWFAEVGDPERELM
VHAVYGLWLARNEARDGKRIVDPRVVEENVYQHIIEWNAIHMKKPRSTTPTLAVRWSPPE
QGWLKANSDGALAKLRDRGGGGVVLRDHDGAYRGGACYVFRDVSDPEVVEILACRKAVHL
AVQTGATRVHVEVDSKGMAAMLNDQAKNLSAAGPIVEEIKLLGRTLQGFIVSRVRRSGNH
GAHLLAREVRSVYTHVILKQPLFDTCRL

>Hvrn.contig8|GeneMark.hmm|gene 7|183_aa
MVLTEKEAKGFVFSGPVEEAWGLHHDAQFRDLGNNLFLVHFGGEGDWKHSRNNGPWQFDF
MILKGYDGKTRPSEMVFDSVEAWVRVEDLPLDRRTREFGEALGNWLGEVVKVDVERDGFA
KGKYLRVRAKIFVYEPVVRYFNLKESVDDEVETAEGQAGPLEAEAEARRGASVSAHSFGR
WGK

>Hvrn.contig8|GeneMark.hmm|gene 8|180_aa
MASTVSPWSETPQDILGLVIDRLHSSPDHEEPRLSAAWSRFLLAVPVAAANRRGFQRARR
TRHSAAADRARFRAVCRSWHLAMRQHVSTPRVLPWIILSDGYFFTPSDNGCRAPRRLPSL
PKNARCIGSTDGWLALDCTDARNVHTYLLHNPFSDTTVPLPELDPIIANVSEFFAVRKAA


>Hvrn.contig8|GeneMark.hmm|gene 9|413_aa
MPLKFWDETFSTAVYLINRVPSRVIHNQTPLERLFGLTPNYTFLRIFGCAVWPNLRPFNK
HKLEYRSKQCVFIGYNYLHKGYKCLDVSTGRVYVSQDVIFDEHIFPFASLHPNAGAQLRA
ELVLLPPTLLNLSSPLTPSAAPNDPMAISTIYAPTSANSVQDSAGISHDFMQPNVSTDLV
ATENPGLHASESATAAPGAGDPPLQASGSAAAAPGSSPGFVHQPAASVGRSPASTSDPAR
QPDASAARPPVSDPVRPTTVATALFPASDLVRSPQEIRLQRRAPPTAPWIGRGLPRVVGP
PCLLPWTREISLDVVTRYRLLRLRPMQRRRCPMQRPPRLLFLLVCHLIRYLLTLRCPVVS
STICNPCNQHLHPLGLILGEPENLKEAIADPKWKAAMDEEFDWAGCPDDRRST

>Hvrn.contig8|GeneMark.hmm|gene 10|180_aa
MAAAGKPLDDDELVSYILQGLDSDYNPEARIDAQNGSNTNSFSINLASKGGSRNNNDTRP
SGPGGGNPAAYRGAGGGFFPNTLVAPPPSGGRDETCQICKRQGHATWHCFKRYDKNFNPP
PKRQGGGGGNNSGGGGNSSGGNTKSANTVPAAYDVDTNWYLDTGAMDHVTGELEKLAMHD


>Hvrn.contig8|GeneMark.hmm|gene 11|105_aa
MGYLDGTMAEPPAVLTTETDVAGKKEISSTPNPAHVLWYTQDQQVLTFLLASLSRDVLLQ
VHSLASATGVWTAIQQMFASHSRARHIQLRGQLGNTKKGDSPVAI

>Hvrn.contig8|GeneMark.hmm|gene 12|144_aa
MVELEEEDDMSMEEVALMTNNSNYLIILIRPGKGVWLPKPDTAPFNLFIDIVFLQGKLYG
ITQAEDLASVSIDFDDCGMPTVTTVERLIKHPPLESCEFDVWSDAGEKLEADGDMGDEDQ
VENGGEDHDEALNEVDARIQKENR

>Hvrn.contig8|GeneMark.hmm|gene 13|300_aa
MSTATSLWDKAALMMREELAVAAVVAGCLDMTKLYVVGAGMFSCVTVALYPVSVIKTRMQ
VASGEAMRRNALATFKNILKVDGVPGLYRGFGTVITGAIPARIIFLTALEKTKATSLKLV
EPLQLSESMEAALANGLGGLTASLCSQAVFVPIDVVSQKLMVQGYSGHVRYKGGIDVVQK
IMKADGPRGLYRGFGLSVMTALGRLDDKEDTPSQLKIVGVQATGGMVAGATSLEDNPLSD
NVPQFAETSSAGSPLEKERVRQRASATISVTRDCQCSRRPTIGGVRQLGRSLPMRRDGAT

