---
abstract: 'Bioinformatics Toolkit'
author:
  - 'BioPerl Team <bioperl-l@bioperl.org>'
build_requires:
  CPAN: '1.81'
  Module::Build: '0.42'
  Test::Harness: '2.62'
  Test::Most: '0'
  URI::Escape: '0'
configure_requires:
  Module::Build: '0.42'
dynamic_config: 1
generated_by: 'Module::Build version 0.4218, CPAN::Meta::Converter version 2.150001'
license: perl
meta-spec:
  url: http://module-build.sourceforge.net/META-spec-v1.4.html
  version: '1.4'
name: BioPerl
provides:
  Bio::Align::AlignI:
    file: Bio/Align/AlignI.pm
  Bio::Align::DNAStatistics:
    file: Bio/Align/DNAStatistics.pm
  Bio::Align::Graphics:
    file: Bio/Align/Graphics.pm
  Bio::Align::PairwiseStatistics:
    file: Bio/Align/PairwiseStatistics.pm
  Bio::Align::ProteinStatistics:
    file: Bio/Align/ProteinStatistics.pm
  Bio::Align::StatisticsI:
    file: Bio/Align/StatisticsI.pm
  Bio::Align::Utilities:
    file: Bio/Align/Utilities.pm
  Bio::AlignIO:
    file: Bio/AlignIO.pm
  Bio::AlignIO::Handler::GenericAlignHandler:
    file: Bio/AlignIO/Handler/GenericAlignHandler.pm
  Bio::AlignIO::arp:
    file: Bio/AlignIO/arp.pm
  Bio::AlignIO::bl2seq:
    file: Bio/AlignIO/bl2seq.pm
  Bio::AlignIO::clustalw:
    file: Bio/AlignIO/clustalw.pm
  Bio::AlignIO::emboss:
    file: Bio/AlignIO/emboss.pm
  Bio::AlignIO::fasta:
    file: Bio/AlignIO/fasta.pm
  Bio::AlignIO::largemultifasta:
    file: Bio/AlignIO/largemultifasta.pm
  Bio::AlignIO::maf:
    file: Bio/AlignIO/maf.pm
  Bio::AlignIO::mase:
    file: Bio/AlignIO/mase.pm
  Bio::AlignIO::mega:
    file: Bio/AlignIO/mega.pm
  Bio::AlignIO::meme:
    file: Bio/AlignIO/meme.pm
  Bio::AlignIO::metafasta:
    file: Bio/AlignIO/metafasta.pm
  Bio::AlignIO::msf:
    file: Bio/AlignIO/msf.pm
  Bio::AlignIO::nexml:
    file: Bio/AlignIO/nexml.pm
  Bio::AlignIO::nexus:
    file: Bio/AlignIO/nexus.pm
  Bio::AlignIO::pfam:
    file: Bio/AlignIO/pfam.pm
  Bio::AlignIO::phylip:
    file: Bio/AlignIO/phylip.pm
  Bio::AlignIO::po:
    file: Bio/AlignIO/po.pm
  Bio::AlignIO::proda:
    file: Bio/AlignIO/proda.pm
  Bio::AlignIO::prodom:
    file: Bio/AlignIO/prodom.pm
  Bio::AlignIO::psi:
    file: Bio/AlignIO/psi.pm
  Bio::AlignIO::selex:
    file: Bio/AlignIO/selex.pm
  Bio::AlignIO::stockholm:
    file: Bio/AlignIO/stockholm.pm
  Bio::AlignIO::xmfa:
    file: Bio/AlignIO/xmfa.pm
  Bio::AnalysisI:
    file: Bio/AnalysisI.pm
  Bio::AnalysisI::JobI:
    file: Bio/AnalysisI.pm
  Bio::AnalysisParserI:
    file: Bio/AnalysisParserI.pm
  Bio::AnalysisResultI:
    file: Bio/AnalysisResultI.pm
  Bio::AnnotatableI:
    file: Bio/AnnotatableI.pm
  Bio::Annotation::AnnotationFactory:
    file: Bio/Annotation/AnnotationFactory.pm
  Bio::Annotation::Collection:
    file: Bio/Annotation/Collection.pm
  Bio::Annotation::Comment:
    file: Bio/Annotation/Comment.pm
  Bio::Annotation::DBLink:
    file: Bio/Annotation/DBLink.pm
  Bio::Annotation::OntologyTerm:
    file: Bio/Annotation/OntologyTerm.pm
  Bio::Annotation::Reference:
    file: Bio/Annotation/Reference.pm
  Bio::Annotation::Relation:
    file: Bio/Annotation/Relation.pm
  Bio::Annotation::SimpleValue:
    file: Bio/Annotation/SimpleValue.pm
  Bio::Annotation::StructuredValue:
    file: Bio/Annotation/StructuredValue.pm
  Bio::Annotation::TagTree:
    file: Bio/Annotation/TagTree.pm
  Bio::Annotation::Target:
    file: Bio/Annotation/Target.pm
  Bio::Annotation::Tree:
    file: Bio/Annotation/Tree.pm
  Bio::Annotation::TypeManager:
    file: Bio/Annotation/TypeManager.pm
  Bio::AnnotationCollectionI:
    file: Bio/DB/HIV/HIVQueryHelper.pm
  Bio::AnnotationI:
    file: Bio/AnnotationI.pm
  Bio::Assembly::Contig:
    file: Bio/Assembly/Contig.pm
  Bio::Assembly::ContigAnalysis:
    file: Bio/Assembly/ContigAnalysis.pm
  Bio::Assembly::IO:
    file: Bio/Assembly/IO.pm
  Bio::Assembly::IO::ace:
    file: Bio/Assembly/IO/ace.pm
  Bio::Assembly::IO::bowtie:
    file: Bio/Assembly/IO/bowtie.pm
  Bio::Assembly::IO::maq:
    file: Bio/Assembly/IO/maq.pm
  Bio::Assembly::IO::phrap:
    file: Bio/Assembly/IO/phrap.pm
  Bio::Assembly::IO::sam:
    file: Bio/Assembly/IO/sam.pm
  Bio::Assembly::IO::tigr:
    file: Bio/Assembly/IO/tigr.pm
  Bio::Assembly::Scaffold:
    file: Bio/Assembly/Scaffold.pm
  Bio::Assembly::ScaffoldI:
    file: Bio/Assembly/ScaffoldI.pm
  Bio::Assembly::Singlet:
    file: Bio/Assembly/Singlet.pm
  Bio::Assembly::Tools::ContigSpectrum:
    file: Bio/Assembly/Tools/ContigSpectrum.pm
  Bio::Cluster::ClusterFactory:
    file: Bio/Cluster/ClusterFactory.pm
  Bio::Cluster::FamilyI:
    file: Bio/Cluster/FamilyI.pm
  Bio::Cluster::SequenceFamily:
    file: Bio/Cluster/SequenceFamily.pm
  Bio::Cluster::UniGene:
    file: Bio/Cluster/UniGene.pm
  Bio::Cluster::UniGeneI:
    file: Bio/Cluster/UniGeneI.pm
  Bio::ClusterI:
    file: Bio/ClusterI.pm
  Bio::ClusterIO:
    file: Bio/ClusterIO.pm
  Bio::ClusterIO::dbsnp:
    file: Bio/ClusterIO/dbsnp.pm
  Bio::ClusterIO::unigene:
    file: Bio/ClusterIO/unigene.pm
  Bio::CodonUsage::IO:
    file: Bio/CodonUsage/IO.pm
  Bio::CodonUsage::Table:
    file: Bio/CodonUsage/Table.pm
  Bio::DB::Ace:
    file: Bio/DB/Ace.pm
  Bio::DB::BioFetch:
    file: Bio/DB/BioFetch.pm
  Bio::DB::CUTG:
    file: Bio/DB/CUTG.pm
  Bio::DB::DBFetch:
    file: Bio/DB/DBFetch.pm
  Bio::DB::EMBL:
    file: Bio/DB/EMBL.pm
  Bio::DB::EntrezGene:
    file: Bio/DB/EntrezGene.pm
  Bio::DB::Expression:
    file: Bio/DB/Expression.pm
  Bio::DB::Expression::geo:
    file: Bio/DB/Expression/geo.pm
  Bio::DB::Failover:
    file: Bio/DB/Failover.pm
  Bio::DB::Fasta:
    file: Bio/DB/Fasta.pm
  Bio::DB::Fasta::Subdir:
    file: Bio/DB/SeqFeature/Store/berkeleydb.pm
  Bio::DB::FileCache:
    file: Bio/DB/FileCache.pm
  Bio::DB::Flat:
    file: Bio/DB/Flat.pm
  Bio::DB::Flat::BDB:
    file: Bio/DB/Flat/BDB.pm
  Bio::DB::Flat::BDB::embl:
    file: Bio/DB/Flat/BDB/embl.pm
  Bio::DB::Flat::BDB::fasta:
    file: Bio/DB/Flat/BDB/fasta.pm
  Bio::DB::Flat::BDB::genbank:
    file: Bio/DB/Flat/BDB/genbank.pm
  Bio::DB::Flat::BDB::swiss:
    file: Bio/DB/Flat/BDB/swiss.pm
  Bio::DB::Flat::BinarySearch:
    file: Bio/DB/Flat/BinarySearch.pm
  Bio::DB::GFF:
    file: Bio/DB/GFF.pm
  Bio::DB::GFF::Adaptor::ace:
    file: Bio/DB/GFF/Adaptor/ace.pm
  Bio::DB::GFF::Adaptor::berkeleydb:
    file: Bio/DB/GFF/Adaptor/berkeleydb.pm
  Bio::DB::GFF::Adaptor::berkeleydb::iterator:
    file: Bio/DB/GFF/Adaptor/berkeleydb/iterator.pm
  Bio::DB::GFF::Adaptor::biofetch:
    file: Bio/DB/GFF/Adaptor/biofetch.pm
  Bio::DB::GFF::Adaptor::biofetch_oracle:
    file: Bio/DB/GFF/Adaptor/biofetch_oracle.pm
  Bio::DB::GFF::Adaptor::dbi:
    file: Bio/DB/GFF/Adaptor/dbi.pm
  Bio::DB::GFF::Adaptor::dbi::caching_handle:
    file: Bio/DB/GFF/Adaptor/dbi/caching_handle.pm
  Bio::DB::GFF::Adaptor::dbi::faux_dbh:
    file: Bio/DB/GFF/Adaptor/dbi/caching_handle.pm
  Bio::DB::GFF::Adaptor::dbi::iterator:
    file: Bio/DB/GFF/Adaptor/dbi/iterator.pm
  Bio::DB::GFF::Adaptor::dbi::mysql:
    file: Bio/DB/GFF/Adaptor/dbi/mysql.pm
  Bio::DB::GFF::Adaptor::dbi::mysqlace:
    file: Bio/DB/GFF/Adaptor/dbi/mysqlace.pm
  Bio::DB::GFF::Adaptor::dbi::mysqlcmap:
    file: Bio/DB/GFF/Adaptor/dbi/mysqlcmap.pm
  Bio::DB::GFF::Adaptor::dbi::mysqlopt:
    file: Bio/DB/GFF/Adaptor/dbi/mysqlopt.pm
  Bio::DB::GFF::Adaptor::dbi::oracle:
    file: Bio/DB/GFF/Adaptor/dbi/oracle.pm
  Bio::DB::GFF::Adaptor::dbi::oracleace:
    file: Bio/DB/GFF/Adaptor/dbi/oracleace.pm
  Bio::DB::GFF::Adaptor::dbi::pg:
    file: Bio/DB/GFF/Adaptor/dbi/pg.pm
  Bio::DB::GFF::Adaptor::dbi::pg_fts:
    file: Bio/DB/GFF/Adaptor/dbi/pg_fts.pm
  Bio::DB::GFF::Adaptor::memory:
    file: Bio/DB/GFF/Adaptor/memory.pm
  Bio::DB::GFF::Adaptor::memory::feature_serializer:
    file: Bio/DB/GFF/Adaptor/memory/feature_serializer.pm
  Bio::DB::GFF::Adaptor::memory::iterator:
    file: Bio/DB/GFF/Adaptor/memory/iterator.pm
  Bio::DB::GFF::Aggregator:
    file: Bio/DB/GFF/Aggregator.pm
  Bio::DB::GFF::Aggregator::alignment:
    file: Bio/DB/GFF/Aggregator/alignment.pm
  Bio::DB::GFF::Aggregator::clone:
    file: Bio/DB/GFF/Aggregator/clone.pm
  Bio::DB::GFF::Aggregator::coding:
    file: Bio/DB/GFF/Aggregator/coding.pm
  Bio::DB::GFF::Aggregator::gene:
    file: Bio/DB/GFF/Aggregator/gene.pm
  Bio::DB::GFF::Aggregator::match:
    file: Bio/DB/GFF/Aggregator/match.pm
  Bio::DB::GFF::Aggregator::none:
    file: Bio/DB/GFF/Aggregator/none.pm
  Bio::DB::GFF::Aggregator::orf:
    file: Bio/DB/GFF/Aggregator/orf.pm
  Bio::DB::GFF::Aggregator::processed_transcript:
    file: Bio/DB/GFF/Aggregator/processed_transcript.pm
  Bio::DB::GFF::Aggregator::so_transcript:
    file: Bio/DB/GFF/Aggregator/so_transcript.pm
  Bio::DB::GFF::Aggregator::transcript:
    file: Bio/DB/GFF/Aggregator/transcript.pm
  Bio::DB::GFF::Aggregator::ucsc_acembly:
    file: Bio/DB/GFF/Aggregator/ucsc_acembly.pm
  Bio::DB::GFF::Aggregator::ucsc_ensgene:
    file: Bio/DB/GFF/Aggregator/ucsc_ensgene.pm
  Bio::DB::GFF::Aggregator::ucsc_genscan:
    file: Bio/DB/GFF/Aggregator/ucsc_genscan.pm
  Bio::DB::GFF::Aggregator::ucsc_refgene:
    file: Bio/DB/GFF/Aggregator/ucsc_refgene.pm
  Bio::DB::GFF::Aggregator::ucsc_sanger22:
    file: Bio/DB/GFF/Aggregator/ucsc_sanger22.pm
  Bio::DB::GFF::Aggregator::ucsc_sanger22pseudo:
    file: Bio/DB/GFF/Aggregator/ucsc_sanger22pseudo.pm
  Bio::DB::GFF::Aggregator::ucsc_softberry:
    file: Bio/DB/GFF/Aggregator/ucsc_softberry.pm
  Bio::DB::GFF::Aggregator::ucsc_twinscan:
    file: Bio/DB/GFF/Aggregator/ucsc_twinscan.pm
  Bio::DB::GFF::Aggregator::ucsc_unigene:
    file: Bio/DB/GFF/Aggregator/ucsc_unigene.pm
  Bio::DB::GFF::Featname:
    file: Bio/DB/GFF/Featname.pm
  Bio::DB::GFF::Feature:
    file: Bio/DB/GFF/Feature.pm
  Bio::DB::GFF::FeatureIterator:
    file: Bio/DB/GFF.pm
  Bio::DB::GFF::Homol:
    file: Bio/DB/GFF/Homol.pm
  Bio::DB::GFF::ID_Iterator:
    file: Bio/DB/GFF.pm
  Bio::DB::GFF::RelSegment:
    file: Bio/DB/GFF/RelSegment.pm
  Bio::DB::GFF::Segment:
    file: Bio/DB/GFF/Segment.pm
  Bio::DB::GFF::Typename:
    file: Bio/DB/GFF/Typename.pm
  Bio::DB::GFF::Util::Binning:
    file: Bio/DB/GFF/Util/Binning.pm
  Bio::DB::GFF::Util::Rearrange:
    file: Bio/DB/GFF/Util/Rearrange.pm
  Bio::DB::GenBank:
    file: Bio/DB/GenBank.pm
  Bio::DB::GenPept:
    file: Bio/DB/GenPept.pm
  Bio::DB::GenericWebAgent:
    file: Bio/DB/GenericWebAgent.pm
  Bio::DB::HIV:
    file: Bio/DB/HIV.pm
  Bio::DB::HIV::HIVAnnotProcessor:
    file: Bio/DB/HIV/HIVAnnotProcessor.pm
  Bio::DB::HIV::HIVQueryHelper:
    file: Bio/DB/HIV/HIVQueryHelper.pm
  Bio::DB::InMemoryCache:
    file: Bio/DB/InMemoryCache.pm
  Bio::DB::Indexed::Stream:
    file: Bio/DB/IndexedBase.pm
  Bio::DB::IndexedBase:
    file: Bio/DB/IndexedBase.pm
  Bio::DB::LocationI:
    file: Bio/DB/LocationI.pm
  Bio::DB::MeSH:
    file: Bio/DB/MeSH.pm
  Bio::DB::NCBIHelper:
    file: Bio/DB/NCBIHelper.pm
  Bio::DB::Qual:
    file: Bio/DB/Qual.pm
  Bio::DB::Query::GenBank:
    file: Bio/DB/Query/GenBank.pm
  Bio::DB::Query::HIVQuery:
    file: Bio/DB/Query/HIVQuery.pm
  Bio::DB::Query::WebQuery:
    file: Bio/DB/Query/WebQuery.pm
  Bio::DB::QueryI:
    file: Bio/DB/QueryI.pm
  Bio::DB::RandomAccessI:
    file: Bio/DB/RandomAccessI.pm
  Bio::DB::RefSeq:
    file: Bio/DB/RefSeq.pm
  Bio::DB::ReferenceI:
    file: Bio/DB/ReferenceI.pm
  Bio::DB::Registry:
    file: Bio/DB/Registry.pm
  Bio::DB::SeqFeature:
    file: Bio/DB/SeqFeature.pm
  Bio::DB::SeqFeature::NormalizedFeature:
    file: Bio/DB/SeqFeature/NormalizedFeature.pm
  Bio::DB::SeqFeature::NormalizedFeatureI:
    file: Bio/DB/SeqFeature/NormalizedFeatureI.pm
  Bio::DB::SeqFeature::NormalizedTableFeatureI:
    file: Bio/DB/SeqFeature/NormalizedTableFeatureI.pm
  Bio::DB::SeqFeature::Segment:
    file: Bio/DB/SeqFeature/Segment.pm
  Bio::DB::SeqFeature::Store:
    file: Bio/DB/SeqFeature/Store.pm
  Bio::DB::SeqFeature::Store::DBI::Iterator:
    file: Bio/DB/SeqFeature/Store/DBI/Iterator.pm
  Bio::DB::SeqFeature::Store::DBI::Pg:
    file: Bio/DB/SeqFeature/Store/DBI/Pg.pm
  Bio::DB::SeqFeature::Store::DBI::SQLite:
    file: Bio/DB/SeqFeature/Store/DBI/SQLite.pm
  Bio::DB::SeqFeature::Store::DBI::mysql:
    file: Bio/DB/SeqFeature/Store/DBI/mysql.pm
  Bio::DB::SeqFeature::Store::FeatureFileLoader:
    file: Bio/DB/SeqFeature/Store/FeatureFileLoader.pm
  Bio::DB::SeqFeature::Store::FeatureIterator:
    file: Bio/DB/SeqFeature/Store.pm
  Bio::DB::SeqFeature::Store::GFF2Loader:
    file: Bio/DB/SeqFeature/Store/GFF2Loader.pm
  Bio::DB::SeqFeature::Store::GFF3Loader:
    file: Bio/DB/SeqFeature/Store/GFF3Loader.pm
  Bio::DB::SeqFeature::Store::LoadHelper:
    file: Bio/DB/SeqFeature/Store/LoadHelper.pm
    version: '1.11'
  Bio::DB::SeqFeature::Store::Loader:
    file: Bio/DB/SeqFeature/Store/Loader.pm
  Bio::DB::SeqFeature::Store::bdb:
    file: Bio/DB/SeqFeature/Store/bdb.pm
  Bio::DB::SeqFeature::Store::berkeleydb:
    file: Bio/DB/SeqFeature/Store/berkeleydb.pm
  Bio::DB::SeqFeature::Store::berkeleydb3:
    file: Bio/DB/SeqFeature/Store/berkeleydb3.pm
  Bio::DB::SeqFeature::Store::berkeleydb::Iterator:
    file: Bio/DB/SeqFeature/Store/berkeleydb.pm
  Bio::DB::SeqFeature::Store::memory:
    file: Bio/DB/SeqFeature/Store/memory.pm
  Bio::DB::SeqFeature::Store::memory::Iterator:
    file: Bio/DB/SeqFeature/Store/memory.pm
  Bio::DB::SeqI:
    file: Bio/DB/SeqI.pm
  Bio::DB::SeqVersion:
    file: Bio/DB/SeqVersion.pm
  Bio::DB::SeqVersion::gi:
    file: Bio/DB/SeqVersion/gi.pm
  Bio::DB::SwissProt:
    file: Bio/DB/SwissProt.pm
  Bio::DB::TFBS:
    file: Bio/DB/TFBS.pm
  Bio::DB::TFBS::transfac_pro:
    file: Bio/DB/TFBS/transfac_pro.pm
  Bio::DB::Taxonomy:
    file: Bio/DB/Taxonomy.pm
  Bio::DB::Taxonomy::entrez:
    file: Bio/DB/Taxonomy/entrez.pm
  Bio::DB::Taxonomy::flatfile:
    file: Bio/DB/Taxonomy/flatfile.pm
  Bio::DB::Taxonomy::greengenes:
    file: Bio/DB/Taxonomy/greengenes.pm
  Bio::DB::Taxonomy::list:
    file: Bio/DB/Taxonomy/list.pm
  Bio::DB::Taxonomy::silva:
    file: Bio/DB/Taxonomy/silva.pm
  Bio::DB::Taxonomy::sqlite:
    file: Bio/DB/Taxonomy/sqlite.pm
  Bio::DB::Universal:
    file: Bio/DB/Universal.pm
  Bio::DB::UpdateableSeqI:
    file: Bio/DB/UpdateableSeqI.pm
  Bio::DB::WebDBSeqI:
    file: Bio/DB/WebDBSeqI.pm
  Bio::DBLinkContainerI:
    file: Bio/DBLinkContainerI.pm
  Bio::Das::FeatureTypeI:
    file: Bio/Das/FeatureTypeI.pm
  Bio::Das::SegmentI:
    file: Bio/Das/SegmentI.pm
  Bio::DasI:
    file: Bio/DasI.pm
  Bio::DescribableI:
    file: Bio/DescribableI.pm
  Bio::Draw::Pictogram:
    file: Bio/Draw/Pictogram.pm
  Bio::Event::EventGeneratorI:
    file: Bio/Event/EventGeneratorI.pm
  Bio::Event::EventHandlerI:
    file: Bio/Event/EventHandlerI.pm
  Bio::Factory::AnalysisI:
    file: Bio/Factory/AnalysisI.pm
  Bio::Factory::ApplicationFactoryI:
    file: Bio/Factory/ApplicationFactoryI.pm
  Bio::Factory::DriverFactory:
    file: Bio/Factory/DriverFactory.pm
  Bio::Factory::FTLocationFactory:
    file: Bio/Factory/FTLocationFactory.pm
  Bio::Factory::LocationFactoryI:
    file: Bio/Factory/LocationFactoryI.pm
  Bio::Factory::MapFactoryI:
    file: Bio/Factory/MapFactoryI.pm
  Bio::Factory::ObjectBuilderI:
    file: Bio/Factory/ObjectBuilderI.pm
  Bio::Factory::ObjectFactory:
    file: Bio/Factory/ObjectFactory.pm
  Bio::Factory::ObjectFactoryI:
    file: Bio/Factory/ObjectFactoryI.pm
  Bio::Factory::SeqAnalysisParserFactory:
    file: Bio/Factory/SeqAnalysisParserFactory.pm
  Bio::Factory::SeqAnalysisParserFactoryI:
    file: Bio/Factory/SeqAnalysisParserFactoryI.pm
  Bio::Factory::SequenceFactoryI:
    file: Bio/Factory/SequenceFactoryI.pm
  Bio::Factory::SequenceProcessorI:
    file: Bio/Factory/SequenceProcessorI.pm
  Bio::Factory::SequenceStreamI:
    file: Bio/Factory/SequenceStreamI.pm
  Bio::Factory::TreeFactoryI:
    file: Bio/Factory/TreeFactoryI.pm
  Bio::FeatureHolderI:
    file: Bio/FeatureHolderI.pm
  Bio::HandlerBaseI:
    file: Bio/HandlerBaseI.pm
  Bio::IdCollectionI:
    file: Bio/IdCollectionI.pm
  Bio::IdentifiableI:
    file: Bio/IdentifiableI.pm
  Bio::Index::Abstract:
    file: Bio/Index/Abstract.pm
  Bio::Index::AbstractSeq:
    file: Bio/Index/AbstractSeq.pm
  Bio::Index::Blast:
    file: Bio/Index/Blast.pm
  Bio::Index::BlastTable:
    file: Bio/Index/BlastTable.pm
  Bio::Index::EMBL:
    file: Bio/Index/EMBL.pm
  Bio::Index::Fasta:
    file: Bio/Index/Fasta.pm
  Bio::Index::Fastq:
    file: Bio/Index/Fastq.pm
  Bio::Index::GenBank:
    file: Bio/Index/GenBank.pm
  Bio::Index::Hmmer:
    file: Bio/Index/Hmmer.pm
  Bio::Index::Qual:
    file: Bio/Index/Qual.pm
  Bio::Index::Stockholm:
    file: Bio/Index/Stockholm.pm
  Bio::Index::SwissPfam:
    file: Bio/Index/SwissPfam.pm
  Bio::Index::Swissprot:
    file: Bio/Index/Swissprot.pm
  Bio::LiveSeq::AARange:
    file: Bio/LiveSeq/AARange.pm
  Bio::LiveSeq::Chain:
    file: Bio/LiveSeq/Chain.pm
  Bio::LiveSeq::ChainI:
    file: Bio/LiveSeq/ChainI.pm
  Bio::LiveSeq::DNA:
    file: Bio/LiveSeq/DNA.pm
  Bio::LiveSeq::Exon:
    file: Bio/LiveSeq/Exon.pm
  Bio::LiveSeq::Gene:
    file: Bio/LiveSeq/Gene.pm
  Bio::LiveSeq::IO::BioPerl:
    file: Bio/LiveSeq/IO/BioPerl.pm
  Bio::LiveSeq::IO::Loader:
    file: Bio/LiveSeq/IO/Loader.pm
  Bio::LiveSeq::Intron:
    file: Bio/LiveSeq/Intron.pm
  Bio::LiveSeq::Mutation:
    file: Bio/LiveSeq/Mutation.pm
  Bio::LiveSeq::Mutator:
    file: Bio/LiveSeq/Mutator.pm
  Bio::LiveSeq::Prim_Transcript:
    file: Bio/LiveSeq/Prim_Transcript.pm
  Bio::LiveSeq::Range:
    file: Bio/LiveSeq/Range.pm
  Bio::LiveSeq::Repeat_Region:
    file: Bio/LiveSeq/Repeat_Region.pm
  Bio::LiveSeq::Repeat_Unit:
    file: Bio/LiveSeq/Repeat_Unit.pm
  Bio::LiveSeq::SeqI:
    file: Bio/LiveSeq/SeqI.pm
  Bio::LiveSeq::Transcript:
    file: Bio/LiveSeq/Transcript.pm
  Bio::LiveSeq::Translation:
    file: Bio/LiveSeq/Translation.pm
  Bio::LocatableSeq:
    file: Bio/Search/Tiling/MapTileUtils.pm
  Bio::Location::Atomic:
    file: Bio/Location/Atomic.pm
  Bio::Location::AvWithinCoordPolicy:
    file: Bio/Location/AvWithinCoordPolicy.pm
  Bio::Location::CoordinatePolicyI:
    file: Bio/Location/CoordinatePolicyI.pm
  Bio::Location::Fuzzy:
    file: Bio/Location/Fuzzy.pm
  Bio::Location::FuzzyLocationI:
    file: Bio/Location/FuzzyLocationI.pm
  Bio::Location::NarrowestCoordPolicy:
    file: Bio/Location/NarrowestCoordPolicy.pm
  Bio::Location::Simple:
    file: Bio/Location/Simple.pm
  Bio::Location::Split:
    file: Bio/Location/Split.pm
  Bio::Location::SplitLocationI:
    file: Bio/Location/SplitLocationI.pm
  Bio::Location::WidestCoordPolicy:
    file: Bio/Location/WidestCoordPolicy.pm
  Bio::LocationI:
    file: Bio/LocationI.pm
  Bio::Map::Clone:
    file: Bio/Map/Clone.pm
  Bio::Map::Contig:
    file: Bio/Map/Contig.pm
  Bio::Map::CytoMap:
    file: Bio/Map/CytoMap.pm
  Bio::Map::CytoMarker:
    file: Bio/Map/CytoMarker.pm
  Bio::Map::CytoPosition:
    file: Bio/Map/CytoPosition.pm
  Bio::Map::EntityI:
    file: Bio/Map/EntityI.pm
  Bio::Map::FPCMarker:
    file: Bio/Map/FPCMarker.pm
  Bio::Map::Gene:
    file: Bio/Map/Gene.pm
  Bio::Map::GeneMap:
    file: Bio/Map/GeneMap.pm
  Bio::Map::GenePosition:
    file: Bio/Map/GenePosition.pm
  Bio::Map::GeneRelative:
    file: Bio/Map/GeneRelative.pm
  Bio::Map::LinkageMap:
    file: Bio/Map/LinkageMap.pm
  Bio::Map::LinkagePosition:
    file: Bio/Map/LinkagePosition.pm
  Bio::Map::MapI:
    file: Bio/Map/MapI.pm
  Bio::Map::Mappable:
    file: Bio/Map/Mappable.pm
  Bio::Map::MappableI:
    file: Bio/Map/MappableI.pm
  Bio::Map::Marker:
    file: Bio/Map/Marker.pm
  Bio::Map::MarkerI:
    file: Bio/Map/MarkerI.pm
  Bio::Map::Microsatellite:
    file: Bio/Map/Microsatellite.pm
  Bio::Map::OrderedPosition:
    file: Bio/Map/OrderedPosition.pm
  Bio::Map::OrderedPositionWithDistance:
    file: Bio/Map/OrderedPositionWithDistance.pm
  Bio::Map::Physical:
    file: Bio/Map/Physical.pm
  Bio::Map::Position:
    file: Bio/Map/Position.pm
  Bio::Map::PositionHandler:
    file: Bio/Map/PositionHandler.pm
  Bio::Map::PositionHandlerI:
    file: Bio/Map/PositionHandlerI.pm
  Bio::Map::PositionI:
    file: Bio/Map/PositionI.pm
  Bio::Map::PositionWithSequence:
    file: Bio/Map/PositionWithSequence.pm
  Bio::Map::Prediction:
    file: Bio/Map/Prediction.pm
  Bio::Map::Relative:
    file: Bio/Map/Relative.pm
  Bio::Map::RelativeI:
    file: Bio/Map/RelativeI.pm
  Bio::Map::SimpleMap:
    file: Bio/Map/SimpleMap.pm
  Bio::Map::TranscriptionFactor:
    file: Bio/Map/TranscriptionFactor.pm
  Bio::MapIO:
    file: Bio/MapIO.pm
  Bio::MapIO::fpc:
    file: Bio/MapIO/fpc.pm
  Bio::MapIO::mapmaker:
    file: Bio/MapIO/mapmaker.pm
  Bio::Matrix::Generic:
    file: Bio/Matrix/Generic.pm
  Bio::Matrix::IO:
    file: Bio/Matrix/IO.pm
  Bio::Matrix::IO::mlagan:
    file: Bio/Matrix/IO/mlagan.pm
  Bio::Matrix::IO::phylip:
    file: Bio/Matrix/IO/phylip.pm
  Bio::Matrix::IO::scoring:
    file: Bio/Matrix/IO/scoring.pm
  Bio::Matrix::MatrixI:
    file: Bio/Matrix/MatrixI.pm
  Bio::Matrix::Mlagan:
    file: Bio/Matrix/Mlagan.pm
  Bio::Matrix::PSM::IO:
    file: Bio/Matrix/PSM/IO.pm
  Bio::Matrix::PSM::IO::mast:
    file: Bio/Matrix/PSM/IO/mast.pm
  Bio::Matrix::PSM::IO::masta:
    file: Bio/Matrix/PSM/IO/masta.pm
  Bio::Matrix::PSM::IO::meme:
    file: Bio/Matrix/PSM/IO/meme.pm
  Bio::Matrix::PSM::IO::psiblast:
    file: Bio/Matrix/PSM/IO/psiblast.pm
  Bio::Matrix::PSM::IO::transfac:
    file: Bio/Matrix/PSM/IO/transfac.pm
  Bio::Matrix::PSM::InstanceSite:
    file: Bio/Matrix/PSM/InstanceSite.pm
  Bio::Matrix::PSM::InstanceSiteI:
    file: Bio/Matrix/PSM/InstanceSiteI.pm
  Bio::Matrix::PSM::ProtMatrix:
    file: Bio/Matrix/PSM/ProtMatrix.pm
  Bio::Matrix::PSM::ProtPsm:
    file: Bio/Matrix/PSM/ProtPsm.pm
  Bio::Matrix::PSM::Psm:
    file: Bio/Matrix/PSM/Psm.pm
  Bio::Matrix::PSM::PsmHeader:
    file: Bio/Matrix/PSM/PsmHeader.pm
  Bio::Matrix::PSM::PsmHeaderI:
    file: Bio/Matrix/PSM/PsmHeaderI.pm
  Bio::Matrix::PSM::PsmI:
    file: Bio/Matrix/PSM/PsmI.pm
  Bio::Matrix::PSM::SiteMatrix:
    file: Bio/Matrix/PSM/SiteMatrix.pm
  Bio::Matrix::PSM::SiteMatrixI:
    file: Bio/Matrix/PSM/SiteMatrixI.pm
  Bio::Matrix::PhylipDist:
    file: Bio/Matrix/PhylipDist.pm
  Bio::Matrix::Scoring:
    file: Bio/Matrix/Scoring.pm
  Bio::MolEvol::CodonModel:
    file: Bio/MolEvol/CodonModel.pm
  Bio::Nexml::Factory:
    file: Bio/Nexml/Factory.pm
  Bio::NexmlIO:
    file: Bio/NexmlIO.pm
  Bio::Ontology::DocumentRegistry:
    file: Bio/Ontology/DocumentRegistry.pm
  Bio::Ontology::GOterm:
    file: Bio/Ontology/GOterm.pm
  Bio::Ontology::InterProTerm:
    file: Bio/Ontology/InterProTerm.pm
  Bio::Ontology::OBOEngine:
    file: Bio/Ontology/OBOEngine.pm
  Bio::Ontology::OBOterm:
    file: Bio/Ontology/OBOterm.pm
  Bio::Ontology::Ontology:
    file: Bio/Ontology/Ontology.pm
  Bio::Ontology::OntologyEngineI:
    file: Bio/Ontology/OntologyEngineI.pm
  Bio::Ontology::OntologyI:
    file: Bio/Ontology/OntologyI.pm
  Bio::Ontology::OntologyStore:
    file: Bio/Ontology/OntologyStore.pm
  Bio::Ontology::Path:
    file: Bio/Ontology/Path.pm
  Bio::Ontology::PathI:
    file: Bio/Ontology/PathI.pm
  Bio::Ontology::Relationship:
    file: Bio/Ontology/Relationship.pm
  Bio::Ontology::RelationshipFactory:
    file: Bio/Ontology/RelationshipFactory.pm
  Bio::Ontology::RelationshipI:
    file: Bio/Ontology/RelationshipI.pm
  Bio::Ontology::RelationshipType:
    file: Bio/Ontology/RelationshipType.pm
  Bio::Ontology::SimpleGOEngine::GraphAdaptor:
    file: Bio/Ontology/SimpleGOEngine/GraphAdaptor.pm
  Bio::Ontology::SimpleOntologyEngine:
    file: Bio/Ontology/SimpleOntologyEngine.pm
  Bio::Ontology::Term:
    file: Bio/Ontology/Term.pm
  Bio::Ontology::TermFactory:
    file: Bio/Ontology/TermFactory.pm
  Bio::Ontology::TermI:
    file: Bio/Ontology/TermI.pm
  Bio::OntologyIO:
    file: Bio/OntologyIO.pm
  Bio::OntologyIO::Handlers::BaseSAXHandler:
    file: Bio/OntologyIO/Handlers/BaseSAXHandler.pm
  Bio::OntologyIO::Handlers::InterProHandler:
    file: Bio/OntologyIO/Handlers/InterProHandler.pm
  Bio::OntologyIO::Handlers::InterPro_BioSQL_Handler:
    file: Bio/OntologyIO/Handlers/InterPro_BioSQL_Handler.pm
  Bio::OntologyIO::InterProParser:
    file: Bio/OntologyIO/InterProParser.pm
  Bio::OntologyIO::dagflat:
    file: Bio/OntologyIO/dagflat.pm
  Bio::OntologyIO::goflat:
    file: Bio/OntologyIO/goflat.pm
  Bio::OntologyIO::obo:
    file: Bio/OntologyIO/obo.pm
  Bio::OntologyIO::simplehierarchy:
    file: Bio/OntologyIO/simplehierarchy.pm
  Bio::OntologyIO::soflat:
    file: Bio/OntologyIO/soflat.pm
  Bio::ParameterBaseI:
    file: Bio/ParameterBaseI.pm
  Bio::Perl:
    file: Bio/Perl.pm
  Bio::Phenotype::Correlate:
    file: Bio/Phenotype/Correlate.pm
  Bio::Phenotype::MeSH::Term:
    file: Bio/Phenotype/MeSH/Term.pm
  Bio::Phenotype::MeSH::Twig:
    file: Bio/Phenotype/MeSH/Twig.pm
  Bio::Phenotype::Measure:
    file: Bio/Phenotype/Measure.pm
  Bio::Phenotype::OMIM::MiniMIMentry:
    file: Bio/Phenotype/OMIM/MiniMIMentry.pm
  Bio::Phenotype::OMIM::OMIMentry:
    file: Bio/Phenotype/OMIM/OMIMentry.pm
  Bio::Phenotype::OMIM::OMIMentryAllelicVariant:
    file: Bio/Phenotype/OMIM/OMIMentryAllelicVariant.pm
  Bio::Phenotype::OMIM::OMIMparser:
    file: Bio/Phenotype/OMIM/OMIMparser.pm
  Bio::Phenotype::Phenotype:
    file: Bio/Phenotype/Phenotype.pm
  Bio::Phenotype::PhenotypeI:
    file: Bio/Phenotype/PhenotypeI.pm
  Bio::PhyloNetwork:
    file: Bio/PhyloNetwork.pm
  Bio::PhyloNetwork::Factory:
    file: Bio/PhyloNetwork/Factory.pm
  Bio::PhyloNetwork::FactoryX:
    file: Bio/PhyloNetwork/FactoryX.pm
  Bio::PhyloNetwork::GraphViz:
    file: Bio/PhyloNetwork/GraphViz.pm
  Bio::PhyloNetwork::RandomFactory:
    file: Bio/PhyloNetwork/RandomFactory.pm
  Bio::PhyloNetwork::TreeFactory:
    file: Bio/PhyloNetwork/TreeFactory.pm
  Bio::PhyloNetwork::TreeFactoryMulti:
    file: Bio/PhyloNetwork/TreeFactoryMulti.pm
  Bio::PhyloNetwork::TreeFactoryX:
    file: Bio/PhyloNetwork/TreeFactoryX.pm
  Bio::PhyloNetwork::muVector:
    file: Bio/PhyloNetwork/muVector.pm
  Bio::PopGen::Genotype:
    file: Bio/PopGen/Genotype.pm
  Bio::PopGen::GenotypeI:
    file: Bio/PopGen/GenotypeI.pm
  Bio::PopGen::HtSNP:
    file: Bio/PopGen/HtSNP.pm
  Bio::PopGen::IO:
    file: Bio/PopGen/IO.pm
  Bio::PopGen::IO::csv:
    file: Bio/PopGen/IO/csv.pm
  Bio::PopGen::IO::hapmap:
    file: Bio/PopGen/IO/hapmap.pm
  Bio::PopGen::IO::phase:
    file: Bio/PopGen/IO/phase.pm
  Bio::PopGen::IO::prettybase:
    file: Bio/PopGen/IO/prettybase.pm
  Bio::PopGen::Individual:
    file: Bio/PopGen/Individual.pm
  Bio::PopGen::IndividualI:
    file: Bio/PopGen/IndividualI.pm
  Bio::PopGen::Marker:
    file: Bio/PopGen/Marker.pm
  Bio::PopGen::MarkerI:
    file: Bio/PopGen/MarkerI.pm
  Bio::PopGen::PopStats:
    file: Bio/PopGen/PopStats.pm
  Bio::PopGen::Population:
    file: Bio/PopGen/Population.pm
  Bio::PopGen::PopulationI:
    file: Bio/PopGen/PopulationI.pm
  Bio::PopGen::Simulation::Coalescent:
    file: Bio/PopGen/Simulation/Coalescent.pm
  Bio::PopGen::Simulation::GeneticDrift:
    file: Bio/PopGen/Simulation/GeneticDrift.pm
  Bio::PopGen::Statistics:
    file: Bio/PopGen/Statistics.pm
  Bio::PopGen::TagHaplotype:
    file: Bio/PopGen/TagHaplotype.pm
  Bio::PopGen::Utilities:
    file: Bio/PopGen/Utilities.pm
  Bio::PrimarySeq:
    file: Bio/PrimarySeq.pm
  Bio::PrimarySeq::Fasta:
    file: Bio/DB/Fasta.pm
  Bio::PrimarySeqI:
    file: Bio/PrimarySeqI.pm
  Bio::PullParserI:
    file: Bio/PullParserI.pm
  Bio::Range:
    file: Bio/Range.pm
  Bio::RangeI:
    file: Bio/RangeI.pm
  Bio::Restriction::Analysis:
    file: Bio/Restriction/Analysis.pm
  Bio::Restriction::Enzyme:
    file: Bio/Restriction/Enzyme.pm
  Bio::Restriction::Enzyme::MultiCut:
    file: Bio/Restriction/Enzyme/MultiCut.pm
  Bio::Restriction::Enzyme::MultiSite:
    file: Bio/Restriction/Enzyme/MultiSite.pm
  Bio::Restriction::EnzymeCollection:
    file: Bio/Restriction/EnzymeCollection.pm
  Bio::Restriction::EnzymeI:
    file: Bio/Restriction/EnzymeI.pm
  Bio::Restriction::IO:
    file: Bio/Restriction/IO.pm
  Bio::Restriction::IO::bairoch:
    file: Bio/Restriction/IO/bairoch.pm
  Bio::Restriction::IO::base:
    file: Bio/Restriction/IO/base.pm
  Bio::Restriction::IO::itype2:
    file: Bio/Restriction/IO/itype2.pm
  Bio::Restriction::IO::prototype:
    file: Bio/Restriction/IO/prototype.pm
  Bio::Restriction::IO::withrefm:
    file: Bio/Restriction/IO/withrefm.pm
  Bio::Root::Build:
    file: Bio/Root/Build.pm
    version: 1.007000_003
  Bio::Root::Exception:
    file: Bio/Root/Exception.pm
  Bio::Root::HTTPget:
    file: Bio/Root/HTTPget.pm
  Bio::Root::IO:
    file: Bio/Root/IO.pm
  Bio::Root::Root:
    file: Bio/Root/Root.pm
  Bio::Root::RootI:
    file: Bio/Root/RootI.pm
  Bio::Root::Storable:
    file: Bio/Root/Storable.pm
  Bio::Root::Test:
    file: Bio/Root/Test.pm
  Bio::Root::TestObject:
    file: Bio/Root/TestObject.pm
  Bio::Root::Utilities:
    file: Bio/Root/Utilities.pm
  Bio::Root::Version:
    file: Bio/Root/Version.pm
    version: 1.007000_003
  Bio::Search::BlastStatistics:
    file: Bio/Search/BlastStatistics.pm
  Bio::Search::BlastUtils:
    file: Bio/Search/BlastUtils.pm
  Bio::Search::DatabaseI:
    file: Bio/Search/DatabaseI.pm
  Bio::Search::GenericDatabase:
    file: Bio/Search/GenericDatabase.pm
  Bio::Search::GenericStatistics:
    file: Bio/Search/GenericStatistics.pm
  Bio::Search::HSP::BlastHSP:
    file: Bio/Search/HSP/BlastHSP.pm
  Bio::Search::HSP::BlastPullHSP:
    file: Bio/Search/HSP/BlastPullHSP.pm
  Bio::Search::HSP::FastaHSP:
    file: Bio/Search/HSP/FastaHSP.pm
  Bio::Search::HSP::GenericHSP:
    file: Bio/Search/HSP/GenericHSP.pm
  Bio::Search::HSP::HMMERHSP:
    file: Bio/Search/HSP/HMMERHSP.pm
  Bio::Search::HSP::HSPFactory:
    file: Bio/Search/HSP/HSPFactory.pm
  Bio::Search::HSP::HSPI:
    file: Bio/Search/HSP/HSPI.pm
  Bio::Search::HSP::HmmpfamHSP:
    file: Bio/Search/HSP/HmmpfamHSP.pm
  Bio::Search::HSP::ModelHSP:
    file: Bio/Search/HSP/ModelHSP.pm
  Bio::Search::HSP::PSLHSP:
    file: Bio/Search/HSP/PSLHSP.pm
  Bio::Search::HSP::PsiBlastHSP:
    file: Bio/Search/HSP/PsiBlastHSP.pm
  Bio::Search::HSP::PullHSPI:
    file: Bio/Search/HSP/PullHSPI.pm
  Bio::Search::HSP::WABAHSP:
    file: Bio/Search/HSP/WABAHSP.pm
  Bio::Search::Hit::BlastHit:
    file: Bio/Search/Hit/BlastHit.pm
  Bio::Search::Hit::BlastPullHit:
    file: Bio/Search/Hit/BlastPullHit.pm
  Bio::Search::Hit::Fasta:
    file: Bio/Search/Hit/Fasta.pm
  Bio::Search::Hit::GenericHit:
    file: Bio/Search/Hit/GenericHit.pm
  Bio::Search::Hit::HMMERHit:
    file: Bio/Search/Hit/HMMERHit.pm
  Bio::Search::Hit::HitFactory:
    file: Bio/Search/Hit/HitFactory.pm
  Bio::Search::Hit::HitI:
    file: Bio/Search/Hit/HitI.pm
  Bio::Search::Hit::HmmpfamHit:
    file: Bio/Search/Hit/HmmpfamHit.pm
  Bio::Search::Hit::ModelHit:
    file: Bio/Search/Hit/ModelHit.pm
  Bio::Search::Hit::PsiBlastHit:
    file: Bio/Search/Hit/PsiBlastHit.pm
  Bio::Search::Hit::PullHitI:
    file: Bio/Search/Hit/PullHitI.pm
  Bio::Search::Hit::hmmer3Hit:
    file: Bio/Search/Hit/hmmer3Hit.pm
  Bio::Search::Iteration::GenericIteration:
    file: Bio/Search/Iteration/GenericIteration.pm
  Bio::Search::Iteration::IterationI:
    file: Bio/Search/Iteration/IterationI.pm
  Bio::Search::Processor:
    file: Bio/Search/Processor.pm
  Bio::Search::Result::BlastPullResult:
    file: Bio/Search/Result/BlastPullResult.pm
  Bio::Search::Result::BlastResult:
    file: Bio/Search/Result/BlastResult.pm
  Bio::Search::Result::CrossMatchResult:
    file: Bio/Search/Result/CrossMatchResult.pm
  Bio::Search::Result::GenericResult:
    file: Bio/Search/Result/GenericResult.pm
  Bio::Search::Result::HMMERResult:
    file: Bio/Search/Result/HMMERResult.pm
  Bio::Search::Result::HmmpfamResult:
    file: Bio/Search/Result/HmmpfamResult.pm
  Bio::Search::Result::INFERNALResult:
    file: Bio/Search/Result/INFERNALResult.pm
  Bio::Search::Result::PullResultI:
    file: Bio/Search/Result/PullResultI.pm
  Bio::Search::Result::ResultFactory:
    file: Bio/Search/Result/ResultFactory.pm
  Bio::Search::Result::ResultI:
    file: Bio/Search/Result/ResultI.pm
  Bio::Search::Result::WABAResult:
    file: Bio/Search/Result/WABAResult.pm
  Bio::Search::Result::hmmer3Result:
    file: Bio/Search/Result/hmmer3Result.pm
  Bio::Search::SearchUtils:
    file: Bio/Search/SearchUtils.pm
  Bio::Search::StatisticsI:
    file: Bio/Search/StatisticsI.pm
  Bio::Search::Tiling::MapTileUtils:
    file: Bio/Search/Tiling/MapTileUtils.pm
  Bio::Search::Tiling::MapTiling:
    file: Bio/Search/Tiling/MapTiling.pm
  Bio::Search::Tiling::TilingI:
    file: Bio/Search/Tiling/TilingI.pm
  Bio::SearchDist:
    file: Bio/SearchDist.pm
  Bio::SearchIO:
    file: Bio/SearchIO.pm
  Bio::SearchIO::EventHandlerI:
    file: Bio/SearchIO/EventHandlerI.pm
  Bio::SearchIO::FastHitEventBuilder:
    file: Bio/SearchIO/FastHitEventBuilder.pm
  Bio::SearchIO::IteratedSearchResultEventBuilder:
    file: Bio/SearchIO/IteratedSearchResultEventBuilder.pm
  Bio::SearchIO::SearchResultEventBuilder:
    file: Bio/SearchIO/SearchResultEventBuilder.pm
  Bio::SearchIO::SearchWriterI:
    file: Bio/SearchIO/SearchWriterI.pm
  Bio::SearchIO::Writer::GbrowseGFF:
    file: Bio/SearchIO/Writer/GbrowseGFF.pm
  Bio::SearchIO::Writer::HSPTableWriter:
    file: Bio/SearchIO/Writer/HSPTableWriter.pm
  Bio::SearchIO::Writer::HTMLResultWriter:
    file: Bio/SearchIO/Writer/HTMLResultWriter.pm
  Bio::SearchIO::Writer::HitTableWriter:
    file: Bio/SearchIO/Writer/HitTableWriter.pm
  Bio::SearchIO::Writer::ResultTableWriter:
    file: Bio/SearchIO/Writer/ResultTableWriter.pm
  Bio::SearchIO::Writer::TextResultWriter:
    file: Bio/SearchIO/Writer/TextResultWriter.pm
  Bio::SearchIO::axt:
    file: Bio/SearchIO/axt.pm
  Bio::SearchIO::blast:
    file: Bio/SearchIO/blast.pm
  Bio::SearchIO::blast_pull:
    file: Bio/SearchIO/blast_pull.pm
  Bio::SearchIO::blasttable:
    file: Bio/SearchIO/blasttable.pm
  Bio::SearchIO::cross_match:
    file: Bio/SearchIO/cross_match.pm
  Bio::SearchIO::erpin:
    file: Bio/SearchIO/erpin.pm
  Bio::SearchIO::exonerate:
    file: Bio/SearchIO/exonerate.pm
  Bio::SearchIO::fasta:
    file: Bio/SearchIO/fasta.pm
  Bio::SearchIO::gmap_f9:
    file: Bio/SearchIO/gmap_f9.pm
  Bio::SearchIO::hmmer:
    file: Bio/SearchIO/hmmer.pm
  Bio::SearchIO::hmmer2:
    file: Bio/SearchIO/hmmer2.pm
  Bio::SearchIO::hmmer3:
    file: Bio/SearchIO/hmmer3.pm
  Bio::SearchIO::hmmer_pull:
    file: Bio/SearchIO/hmmer_pull.pm
  Bio::SearchIO::infernal:
    file: Bio/SearchIO/infernal.pm
  Bio::SearchIO::megablast:
    file: Bio/SearchIO/megablast.pm
  Bio::SearchIO::psl:
    file: Bio/SearchIO/psl.pm
  Bio::SearchIO::rnamotif:
    file: Bio/SearchIO/rnamotif.pm
  Bio::SearchIO::sim4:
    file: Bio/SearchIO/sim4.pm
  Bio::SearchIO::waba:
    file: Bio/SearchIO/waba.pm
  Bio::SearchIO::wise:
    file: Bio/SearchIO/wise.pm
  Bio::Seq:
    file: Bio/Seq.pm
  Bio::Seq::BaseSeqProcessor:
    file: Bio/Seq/BaseSeqProcessor.pm
  Bio::Seq::EncodedSeq:
    file: Bio/Seq/EncodedSeq.pm
  Bio::Seq::LargeLocatableSeq:
    file: Bio/Seq/LargeLocatableSeq.pm
  Bio::Seq::LargePrimarySeq:
    file: Bio/Seq/LargePrimarySeq.pm
  Bio::Seq::LargeSeq:
    file: Bio/Seq/LargeSeq.pm
  Bio::Seq::LargeSeqI:
    file: Bio/Seq/LargeSeqI.pm
  Bio::Seq::Meta:
    file: Bio/Seq/Meta.pm
  Bio::Seq::Meta::Array:
    file: Bio/Seq/Meta/Array.pm
  Bio::Seq::MetaI:
    file: Bio/Seq/MetaI.pm
  Bio::Seq::PrimaryQual:
    file: Bio/Seq/PrimaryQual.pm
  Bio::Seq::PrimaryQual::Qual:
    file: Bio/DB/Qual.pm
  Bio::Seq::PrimedSeq:
    file: Bio/Seq/PrimedSeq.pm
  Bio::Seq::QualI:
    file: Bio/Seq/QualI.pm
  Bio::Seq::Quality:
    file: Bio/Seq/Quality.pm
  Bio::Seq::RichSeq:
    file: Bio/Seq/RichSeq.pm
  Bio::Seq::RichSeqI:
    file: Bio/Seq/RichSeqI.pm
  Bio::Seq::SeqBuilder:
    file: Bio/Seq/SeqBuilder.pm
  Bio::Seq::SeqFactory:
    file: Bio/Seq/SeqFactory.pm
  Bio::Seq::SeqFastaSpeedFactory:
    file: Bio/Seq/SeqFastaSpeedFactory.pm
  Bio::Seq::SeqWithQuality:
    file: Bio/Seq/SeqWithQuality.pm
  Bio::Seq::SequenceTrace:
    file: Bio/Seq/SequenceTrace.pm
  Bio::Seq::SimulatedRead:
    file: Bio/Seq/SimulatedRead.pm
  Bio::Seq::TraceI:
    file: Bio/Seq/TraceI.pm
  Bio::SeqAnalysisParserI:
    file: Bio/SeqAnalysisParserI.pm
  Bio::SeqEvolution::DNAPoint:
    file: Bio/SeqEvolution/DNAPoint.pm
  Bio::SeqEvolution::EvolutionI:
    file: Bio/SeqEvolution/EvolutionI.pm
  Bio::SeqEvolution::Factory:
    file: Bio/SeqEvolution/Factory.pm
  Bio::SeqFeature::Amplicon:
    file: Bio/SeqFeature/Amplicon.pm
  Bio::SeqFeature::AnnotationAdaptor:
    file: Bio/SeqFeature/AnnotationAdaptor.pm
  Bio::SeqFeature::Collection:
    file: Bio/SeqFeature/Collection.pm
  Bio::SeqFeature::CollectionI:
    file: Bio/SeqFeature/CollectionI.pm
  Bio::SeqFeature::Computation:
    file: Bio/SeqFeature/Computation.pm
  Bio::SeqFeature::FeaturePair:
    file: Bio/SeqFeature/FeaturePair.pm
  Bio::SeqFeature::Gene::Exon:
    file: Bio/SeqFeature/Gene/Exon.pm
  Bio::SeqFeature::Gene::ExonI:
    file: Bio/SeqFeature/Gene/ExonI.pm
  Bio::SeqFeature::Gene::GeneStructure:
    file: Bio/SeqFeature/Gene/GeneStructure.pm
  Bio::SeqFeature::Gene::GeneStructureI:
    file: Bio/SeqFeature/Gene/GeneStructureI.pm
  Bio::SeqFeature::Gene::Intron:
    file: Bio/SeqFeature/Gene/Intron.pm
  Bio::SeqFeature::Gene::NC_Feature:
    file: Bio/SeqFeature/Gene/NC_Feature.pm
  Bio::SeqFeature::Gene::Poly_A_site:
    file: Bio/SeqFeature/Gene/Poly_A_site.pm
  Bio::SeqFeature::Gene::Promoter:
    file: Bio/SeqFeature/Gene/Promoter.pm
  Bio::SeqFeature::Gene::Transcript:
    file: Bio/SeqFeature/Gene/Transcript.pm
  Bio::SeqFeature::Gene::TranscriptI:
    file: Bio/SeqFeature/Gene/TranscriptI.pm
  Bio::SeqFeature::Gene::UTR:
    file: Bio/SeqFeature/Gene/UTR.pm
  Bio::SeqFeature::Generic:
    file: Bio/SeqFeature/Generic.pm
  Bio::SeqFeature::Lite:
    file: Bio/SeqFeature/Lite.pm
  Bio::SeqFeature::PositionProxy:
    file: Bio/SeqFeature/PositionProxy.pm
  Bio::SeqFeature::Primer:
    file: Bio/SeqFeature/Primer.pm
  Bio::SeqFeature::SiRNA::Oligo:
    file: Bio/SeqFeature/SiRNA/Oligo.pm
  Bio::SeqFeature::SiRNA::Pair:
    file: Bio/SeqFeature/SiRNA/Pair.pm
  Bio::SeqFeature::Similarity:
    file: Bio/SeqFeature/Similarity.pm
  Bio::SeqFeature::SimilarityPair:
    file: Bio/SeqFeature/SimilarityPair.pm
  Bio::SeqFeature::SubSeq:
    file: Bio/SeqFeature/SubSeq.pm
  Bio::SeqFeature::Tools::FeatureNamer:
    file: Bio/SeqFeature/Tools/FeatureNamer.pm
  Bio::SeqFeature::Tools::IDHandler:
    file: Bio/SeqFeature/Tools/IDHandler.pm
  Bio::SeqFeature::Tools::TypeMapper:
    file: Bio/SeqFeature/Tools/TypeMapper.pm
  Bio::SeqFeature::Tools::Unflattener:
    file: Bio/SeqFeature/Tools/Unflattener.pm
  Bio::SeqFeature::TypedSeqFeatureI:
    file: Bio/SeqFeature/TypedSeqFeatureI.pm
  Bio::SeqFeatureI:
    file: Bio/SeqFeatureI.pm
  Bio::SeqI:
    file: Bio/SeqI.pm
  Bio::SeqIO:
    file: Bio/SeqIO.pm
  Bio::SeqIO::FTHelper:
    file: Bio/SeqIO/FTHelper.pm
  Bio::SeqIO::Handler::GenericRichSeqHandler:
    file: Bio/SeqIO/Handler/GenericRichSeqHandler.pm
  Bio::SeqIO::MultiFile:
    file: Bio/SeqIO/MultiFile.pm
  Bio::SeqIO::abi:
    file: Bio/SeqIO/abi.pm
  Bio::SeqIO::ace:
    file: Bio/SeqIO/ace.pm
  Bio::SeqIO::agave:
    file: Bio/SeqIO/agave.pm
  Bio::SeqIO::alf:
    file: Bio/SeqIO/alf.pm
  Bio::SeqIO::asciitree:
    file: Bio/SeqIO/asciitree.pm
  Bio::SeqIO::bsml:
    file: Bio/SeqIO/bsml.pm
  Bio::SeqIO::bsml_sax:
    file: Bio/SeqIO/bsml_sax.pm
  Bio::SeqIO::chadoxml:
    file: Bio/SeqIO/chadoxml.pm
  Bio::SeqIO::chaos:
    file: Bio/SeqIO/chaos.pm
  Bio::SeqIO::chaosxml:
    file: Bio/SeqIO/chaosxml.pm
  Bio::SeqIO::ctf:
    file: Bio/SeqIO/ctf.pm
  Bio::SeqIO::embl:
    file: Bio/SeqIO/embl.pm
  Bio::SeqIO::embldriver:
    file: Bio/SeqIO/embldriver.pm
  Bio::SeqIO::entrezgene:
    file: Bio/SeqIO/entrezgene.pm
  Bio::SeqIO::excel:
    file: Bio/SeqIO/excel.pm
  Bio::SeqIO::exp:
    file: Bio/SeqIO/exp.pm
  Bio::SeqIO::fasta:
    file: Bio/SeqIO/fasta.pm
  Bio::SeqIO::fastq:
    file: Bio/SeqIO/fastq.pm
  Bio::SeqIO::flybase_chadoxml:
    file: Bio/SeqIO/flybase_chadoxml.pm
  Bio::SeqIO::game:
    file: Bio/SeqIO/game.pm
  Bio::SeqIO::game::featHandler:
    file: Bio/SeqIO/game/featHandler.pm
  Bio::SeqIO::game::gameHandler:
    file: Bio/SeqIO/game/gameHandler.pm
  Bio::SeqIO::game::gameSubs:
    file: Bio/SeqIO/game/gameSubs.pm
  Bio::SeqIO::game::gameWriter:
    file: Bio/SeqIO/game/gameWriter.pm
  Bio::SeqIO::game::seqHandler:
    file: Bio/SeqIO/game/seqHandler.pm
  Bio::SeqIO::gbdriver:
    file: Bio/SeqIO/gbdriver.pm
  Bio::SeqIO::gbxml:
    file: Bio/SeqIO/gbxml.pm
  Bio::SeqIO::gcg:
    file: Bio/SeqIO/gcg.pm
  Bio::SeqIO::genbank:
    file: Bio/SeqIO/genbank.pm
  Bio::SeqIO::interpro:
    file: Bio/SeqIO/interpro.pm
  Bio::SeqIO::kegg:
    file: Bio/SeqIO/kegg.pm
  Bio::SeqIO::largefasta:
    file: Bio/SeqIO/largefasta.pm
  Bio::SeqIO::lasergene:
    file: Bio/SeqIO/lasergene.pm
  Bio::SeqIO::locuslink:
    file: Bio/SeqIO/locuslink.pm
  Bio::SeqIO::mbsout:
    file: Bio/SeqIO/mbsout.pm
  Bio::SeqIO::metafasta:
    file: Bio/SeqIO/metafasta.pm
  Bio::SeqIO::msout:
    file: Bio/SeqIO/msout.pm
  Bio::SeqIO::nexml:
    file: Bio/SeqIO/nexml.pm
  Bio::SeqIO::phd:
    file: Bio/SeqIO/phd.pm
  Bio::SeqIO::pir:
    file: Bio/SeqIO/pir.pm
  Bio::SeqIO::pln:
    file: Bio/SeqIO/pln.pm
  Bio::SeqIO::qual:
    file: Bio/SeqIO/qual.pm
  Bio::SeqIO::raw:
    file: Bio/SeqIO/raw.pm
  Bio::SeqIO::scf:
    file: Bio/SeqIO/scf.pm
  Bio::SeqIO::seqxml:
    file: Bio/SeqIO/seqxml.pm
  Bio::SeqIO::strider:
    file: Bio/SeqIO/strider.pm
  Bio::SeqIO::swiss:
    file: Bio/SeqIO/swiss.pm
  Bio::SeqIO::swissdriver:
    file: Bio/SeqIO/swissdriver.pm
  Bio::SeqIO::tab:
    file: Bio/SeqIO/tab.pm
  Bio::SeqIO::table:
    file: Bio/SeqIO/table.pm
  Bio::SeqIO::tigr:
    file: Bio/SeqIO/tigr.pm
  Bio::SeqIO::tigrxml:
    file: Bio/SeqIO/tigrxml.pm
  Bio::SeqIO::tinyseq:
    file: Bio/SeqIO/tinyseq.pm
  Bio::SeqIO::tinyseq::tinyseqHandler:
    file: Bio/SeqIO/tinyseq/tinyseqHandler.pm
  Bio::SeqIO::ztr:
    file: Bio/SeqIO/ztr.pm
  Bio::SeqUtils:
    file: Bio/SeqUtils.pm
  Bio::SimpleAlign:
    file: Bio/SimpleAlign.pm
  Bio::SimpleAnalysisI:
    file: Bio/SimpleAnalysisI.pm
  Bio::Species:
    file: Bio/Species.pm
  Bio::Structure::Atom:
    file: Bio/Structure/Atom.pm
  Bio::Structure::Chain:
    file: Bio/Structure/Chain.pm
  Bio::Structure::Entry:
    file: Bio/Structure/Entry.pm
  Bio::Structure::IO:
    file: Bio/Structure/IO.pm
  Bio::Structure::IO::pdb:
    file: Bio/Structure/IO/pdb.pm
  Bio::Structure::Model:
    file: Bio/Structure/Model.pm
  Bio::Structure::Residue:
    file: Bio/Structure/Residue.pm
  Bio::Structure::SecStr::DSSP::Res:
    file: Bio/Structure/SecStr/DSSP/Res.pm
  Bio::Structure::SecStr::STRIDE::Res:
    file: Bio/Structure/SecStr/STRIDE/Res.pm
  Bio::Structure::StructureI:
    file: Bio/Structure/StructureI.pm
  Bio::Symbol::Alphabet:
    file: Bio/Symbol/Alphabet.pm
  Bio::Symbol::AlphabetI:
    file: Bio/Symbol/AlphabetI.pm
  Bio::Symbol::DNAAlphabet:
    file: Bio/Symbol/DNAAlphabet.pm
  Bio::Symbol::ProteinAlphabet:
    file: Bio/Symbol/ProteinAlphabet.pm
  Bio::Symbol::Symbol:
    file: Bio/Symbol/Symbol.pm
  Bio::Symbol::SymbolI:
    file: Bio/Symbol/SymbolI.pm
  Bio::Taxon:
    file: Bio/Taxon.pm
  Bio::Taxonomy:
    file: Bio/Taxonomy.pm
  Bio::Taxonomy::FactoryI:
    file: Bio/Taxonomy/FactoryI.pm
  Bio::Taxonomy::Node:
    file: Bio/Taxonomy/Node.pm
  Bio::Taxonomy::Taxon:
    file: Bio/Taxonomy/Taxon.pm
  Bio::Taxonomy::Tree:
    file: Bio/Taxonomy/Tree.pm
  Bio::Tools::AlignFactory:
    file: Bio/Tools/AlignFactory.pm
  Bio::Tools::Alignment::Consed:
    file: Bio/Tools/Alignment/Consed.pm
  Bio::Tools::Alignment::Trim:
    file: Bio/Tools/Alignment/Trim.pm
  Bio::Tools::AmpliconSearch:
    file: Bio/Tools/AmpliconSearch.pm
  Bio::Tools::Analysis::DNA::ESEfinder:
    file: Bio/Tools/Analysis/DNA/ESEfinder.pm
  Bio::Tools::Analysis::Protein::Domcut:
    file: Bio/Tools/Analysis/Protein/Domcut.pm
  Bio::Tools::Analysis::Protein::ELM:
    file: Bio/Tools/Analysis/Protein/ELM.pm
  Bio::Tools::Analysis::Protein::GOR4:
    file: Bio/Tools/Analysis/Protein/GOR4.pm
  Bio::Tools::Analysis::Protein::HNN:
    file: Bio/Tools/Analysis/Protein/HNN.pm
  Bio::Tools::Analysis::Protein::Mitoprot:
    file: Bio/Tools/Analysis/Protein/Mitoprot.pm
  Bio::Tools::Analysis::Protein::NetPhos:
    file: Bio/Tools/Analysis/Protein/NetPhos.pm
  Bio::Tools::Analysis::Protein::Scansite:
    file: Bio/Tools/Analysis/Protein/Scansite.pm
  Bio::Tools::Analysis::Protein::Sopma:
    file: Bio/Tools/Analysis/Protein/Sopma.pm
  Bio::Tools::Analysis::SimpleAnalysisBase:
    file: Bio/Tools/Analysis/SimpleAnalysisBase.pm
  Bio::Tools::AnalysisResult:
    file: Bio/Tools/AnalysisResult.pm
  Bio::Tools::Blat:
    file: Bio/Tools/Blat.pm
  Bio::Tools::CodonTable:
    file: Bio/Tools/CodonTable.pm
  Bio::Tools::Coil:
    file: Bio/Tools/Coil.pm
  Bio::Tools::ECnumber:
    file: Bio/Tools/ECnumber.pm
  Bio::Tools::EMBOSS::Palindrome:
    file: Bio/Tools/EMBOSS/Palindrome.pm
  Bio::Tools::EPCR:
    file: Bio/Tools/EPCR.pm
  Bio::Tools::ERPIN:
    file: Bio/Tools/ERPIN.pm
  Bio::Tools::ESTScan:
    file: Bio/Tools/ESTScan.pm
  Bio::Tools::Eponine:
    file: Bio/Tools/Eponine.pm
  Bio::Tools::Est2Genome:
    file: Bio/Tools/Est2Genome.pm
  Bio::Tools::Fgenesh:
    file: Bio/Tools/Fgenesh.pm
  Bio::Tools::FootPrinter:
    file: Bio/Tools/FootPrinter.pm
  Bio::Tools::GFF:
    file: Bio/Tools/GFF.pm
  Bio::Tools::Gel:
    file: Bio/Tools/Gel.pm
  Bio::Tools::Geneid:
    file: Bio/Tools/Geneid.pm
  Bio::Tools::Genemark:
    file: Bio/Tools/Genemark.pm
  Bio::Tools::Genewise:
    file: Bio/Tools/Genewise.pm
  Bio::Tools::Genomewise:
    file: Bio/Tools/Genomewise.pm
  Bio::Tools::Genscan:
    file: Bio/Tools/Genscan.pm
  Bio::Tools::Glimmer:
    file: Bio/Tools/Glimmer.pm
  Bio::Tools::Grail:
    file: Bio/Tools/Grail.pm
  Bio::Tools::GuessSeqFormat:
    file: Bio/Tools/GuessSeqFormat.pm
  Bio::Tools::HMMER::Domain:
    file: Bio/Tools/HMMER/Domain.pm
  Bio::Tools::HMMER::Results:
    file: Bio/Tools/HMMER/Results.pm
  Bio::Tools::HMMER::Set:
    file: Bio/Tools/HMMER/Set.pm
  Bio::Tools::Hmmpfam:
    file: Bio/Tools/Hmmpfam.pm
  Bio::Tools::IUPAC:
    file: Bio/Tools/IUPAC.pm
  Bio::Tools::Infernal:
    file: Bio/Tools/Infernal.pm
  Bio::Tools::Lucy:
    file: Bio/Tools/Lucy.pm
  Bio::Tools::MZEF:
    file: Bio/Tools/MZEF.pm
  Bio::Tools::Match:
    file: Bio/Tools/Match.pm
  Bio::Tools::OddCodes:
    file: Bio/Tools/OddCodes.pm
  Bio::Tools::Phylo::Gerp:
    file: Bio/Tools/Phylo/Gerp.pm
  Bio::Tools::Phylo::Gumby:
    file: Bio/Tools/Phylo/Gumby.pm
  Bio::Tools::Phylo::Molphy:
    file: Bio/Tools/Phylo/Molphy.pm
  Bio::Tools::Phylo::Molphy::Result:
    file: Bio/Tools/Phylo/Molphy/Result.pm
  Bio::Tools::Phylo::PAML:
    file: Bio/Tools/Phylo/PAML.pm
  Bio::Tools::Phylo::PAML::Codeml:
    file: Bio/Tools/Phylo/PAML/Codeml.pm
  Bio::Tools::Phylo::PAML::ModelResult:
    file: Bio/Tools/Phylo/PAML/ModelResult.pm
  Bio::Tools::Phylo::PAML::Result:
    file: Bio/Tools/Phylo/PAML/Result.pm
  Bio::Tools::Phylo::Phylip::ProtDist:
    file: Bio/Tools/Phylo/Phylip/ProtDist.pm
  Bio::Tools::Prediction::Exon:
    file: Bio/Tools/Prediction/Exon.pm
  Bio::Tools::Prediction::Gene:
    file: Bio/Tools/Prediction/Gene.pm
  Bio::Tools::Primer3:
    file: Bio/Tools/Primer3.pm
  Bio::Tools::Primer::Assessor::Base:
    file: Bio/Tools/Primer/Assessor/Base.pm
  Bio::Tools::Primer::AssessorI:
    file: Bio/Tools/Primer/AssessorI.pm
  Bio::Tools::Primer::Feature:
    file: Bio/Tools/Primer/Feature.pm
  Bio::Tools::Primer::Pair:
    file: Bio/Tools/Primer/Pair.pm
  Bio::Tools::Prints:
    file: Bio/Tools/Prints.pm
  Bio::Tools::Profile:
    file: Bio/Tools/Profile.pm
  Bio::Tools::Promoterwise:
    file: Bio/Tools/Promoterwise.pm
  Bio::Tools::PrositeScan:
    file: Bio/Tools/PrositeScan.pm
  Bio::Tools::Protparam:
    file: Bio/Tools/Protparam.pm
  Bio::Tools::Pseudowise:
    file: Bio/Tools/Pseudowise.pm
  Bio::Tools::QRNA:
    file: Bio/Tools/QRNA.pm
  Bio::Tools::RNAMotif:
    file: Bio/Tools/RNAMotif.pm
  Bio::Tools::RandomDistFunctions:
    file: Bio/Tools/RandomDistFunctions.pm
  Bio::Tools::RepeatMasker:
    file: Bio/Tools/RepeatMasker.pm
  Bio::Tools::Run::GenericParameters:
    file: Bio/Tools/Run/GenericParameters.pm
  Bio::Tools::Run::ParametersI:
    file: Bio/Tools/Run/ParametersI.pm
  Bio::Tools::Run::RemoteBlast:
    file: Bio/Tools/Run/RemoteBlast.pm
  Bio::Tools::Seg:
    file: Bio/Tools/Seg.pm
  Bio::Tools::SeqPattern:
    file: Bio/Tools/SeqPattern.pm
  Bio::Tools::SeqPattern::Backtranslate:
    file: Bio/Tools/SeqPattern/Backtranslate.pm
  Bio::Tools::SeqStats:
    file: Bio/Tools/SeqStats.pm
  Bio::Tools::SeqWords:
    file: Bio/Tools/SeqWords.pm
  Bio::Tools::SiRNA:
    file: Bio/Tools/SiRNA.pm
  Bio::Tools::SiRNA::Ruleset::saigo:
    file: Bio/Tools/SiRNA/Ruleset/saigo.pm
  Bio::Tools::SiRNA::Ruleset::tuschl:
    file: Bio/Tools/SiRNA/Ruleset/tuschl.pm
  Bio::Tools::Sigcleave:
    file: Bio/Tools/Sigcleave.pm
  Bio::Tools::Signalp:
    file: Bio/Tools/Signalp.pm
  Bio::Tools::Signalp::ExtendedSignalp:
    file: Bio/Tools/Signalp/ExtendedSignalp.pm
  Bio::Tools::Sim4::Exon:
    file: Bio/Tools/Sim4/Exon.pm
  Bio::Tools::Sim4::Results:
    file: Bio/Tools/Sim4/Results.pm
  Bio::Tools::Spidey::Exon:
    file: Bio/Tools/Spidey/Exon.pm
  Bio::Tools::Spidey::Results:
    file: Bio/Tools/Spidey/Results.pm
  Bio::Tools::TandemRepeatsFinder:
    file: Bio/Tools/TandemRepeatsFinder.pm
  Bio::Tools::TargetP:
    file: Bio/Tools/TargetP.pm
  Bio::Tools::Tmhmm:
    file: Bio/Tools/Tmhmm.pm
  Bio::Tools::dpAlign:
    file: Bio/Tools/dpAlign.pm
  Bio::Tools::ipcress:
    file: Bio/Tools/ipcress.pm
  Bio::Tools::isPcr:
    file: Bio/Tools/isPcr.pm
  Bio::Tools::pICalculator:
    file: Bio/Tools/pICalculator.pm
  Bio::Tools::pSW:
    file: Bio/Tools/pSW.pm
  Bio::Tools::tRNAscanSE:
    file: Bio/Tools/tRNAscanSE.pm
  Bio::Tree::AlleleNode:
    file: Bio/Tree/AlleleNode.pm
  Bio::Tree::AnnotatableNode:
    file: Bio/Tree/AnnotatableNode.pm
  Bio::Tree::Compatible:
    file: Bio/Tree/Compatible.pm
  Bio::Tree::DistanceFactory:
    file: Bio/Tree/DistanceFactory.pm
  Bio::Tree::Draw::Cladogram:
    file: Bio/Tree/Draw/Cladogram.pm
  Bio::Tree::Node:
    file: Bio/Tree/Node.pm
  Bio::Tree::NodeI:
    file: Bio/Tree/NodeI.pm
  Bio::Tree::NodeNHX:
    file: Bio/Tree/NodeNHX.pm
  Bio::Tree::RandomFactory:
    file: Bio/Tree/RandomFactory.pm
  Bio::Tree::Statistics:
    file: Bio/Tree/Statistics.pm
  Bio::Tree::Tree:
    file: Bio/Tree/Tree.pm
  Bio::Tree::TreeFunctionsI:
    file: Bio/Tree/TreeFunctionsI.pm
  Bio::Tree::TreeI:
    file: Bio/Tree/TreeI.pm
  Bio::TreeIO:
    file: Bio/TreeIO.pm
  Bio::TreeIO::NewickParser:
    file: Bio/TreeIO/NewickParser.pm
  Bio::TreeIO::TreeEventBuilder:
    file: Bio/TreeIO/TreeEventBuilder.pm
  Bio::TreeIO::cluster:
    file: Bio/TreeIO/cluster.pm
  Bio::TreeIO::lintree:
    file: Bio/TreeIO/lintree.pm
  Bio::TreeIO::newick:
    file: Bio/TreeIO/newick.pm
  Bio::TreeIO::nexml:
    file: Bio/TreeIO/nexml.pm
  Bio::TreeIO::nexus:
    file: Bio/TreeIO/nexus.pm
  Bio::TreeIO::nhx:
    file: Bio/TreeIO/nhx.pm
  Bio::TreeIO::pag:
    file: Bio/TreeIO/pag.pm
  Bio::TreeIO::phyloxml:
    file: Bio/TreeIO/phyloxml.pm
  Bio::TreeIO::svggraph:
    file: Bio/TreeIO/svggraph.pm
  Bio::TreeIO::tabtree:
    file: Bio/TreeIO/tabtree.pm
  Bio::UpdateableSeqI:
    file: Bio/UpdateableSeqI.pm
  Bio::Variation::AAChange:
    file: Bio/Variation/AAChange.pm
  Bio::Variation::AAReverseMutate:
    file: Bio/Variation/AAReverseMutate.pm
  Bio::Variation::Allele:
    file: Bio/Variation/Allele.pm
  Bio::Variation::DNAMutation:
    file: Bio/Variation/DNAMutation.pm
  Bio::Variation::IO:
    file: Bio/Variation/IO.pm
  Bio::Variation::IO::flat:
    file: Bio/Variation/IO/flat.pm
  Bio::Variation::IO::xml:
    file: Bio/Variation/IO/xml.pm
  Bio::Variation::RNAChange:
    file: Bio/Variation/RNAChange.pm
  Bio::Variation::SNP:
    file: Bio/Variation/SNP.pm
  Bio::Variation::SeqDiff:
    file: Bio/Variation/SeqDiff.pm
  Bio::Variation::VariantI:
    file: Bio/Variation/VariantI.pm
  Bio::WebAgent:
    file: Bio/WebAgent.pm
  FeatureStore:
    file: Bio/DB/GFF/Adaptor/berkeleydb.pm
recommends:
  Algorithm::Munkres: '0'
  Array::Compare: '0'
  Bio::Phylo: '0'
  CGI: '0'
  Clone: '0'
  Convert::Binary::C: '0'
  DB_File: '0'
  Error: '0'
  GD: '0'
  Graph: '0.5'
  GraphViz: '0'
  HTML::Entities: '0'
  HTML::HeadParser: '3'
  HTML::TableExtract: '0'
  HTTP::Request::Common: '0'
  IO::Scalar: '0'
  Inline::C: '0.67'
  LWP::UserAgent: '0'
  List::MoreUtils: '0'
  PostScript::TextBlock: '0'
  SOAP::Lite: '0'
  SVG: '2.26'
  SVG::Graph: '0.01'
  Set::Scalar: '0'
  Sort::Naturally: '0'
  Spreadsheet::ParseExcel: '0'
  Storable: '2.05'
  Text::ParseWords: '0'
  XML::DOM: '0'
  XML::DOM::XPath: '0'
  XML::LibXML: '0'
  XML::Parser: '0'
  XML::Parser::PerlSAX: '0'
  XML::SAX: '0.15'
  XML::SAX::Writer: '0'
  XML::Simple: '0'
  XML::Twig: '0'
  XML::Writer: '0.4'
  YAML: '0'
requires:
  Data::Stag: '0.11'
  ExtUtils::Manifest: '1.52'
  IO::String: '0'
  Scalar::Util: '0'
  perl: v5.6.1
resources:
  license: http://dev.perl.org/licenses/
version: 1.007000_003
