!!SEQUENCE_LIST 1.0
BLASTP 2.2.1 [Apr-13-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= /v0/people/staji002/test.gcg
         (146 letters)

Database: pir
           274,514 sequences; 93,460,074 total letters

Searching. . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . . .done

                                                         Score    E
 Sequences producing significant alignments:             (bits)  Value ..

PIR2:S44629  Begin: 342 End: 470 
!F22B7.10 protein - Caenorhabditis elegans                   57  2e-08
PIR2:T21398  Begin: 40 End: 108 
!hypothetical protein F26D2.1 - Caenorhabditis elegans       33  0.40
PIR1:WMBELM  Begin: 307 End: 385 
!membrane protein LMP-2A - human herpesvirus 4               32  0.53
\\End of List

>PIR2:S44629 F22B7.10 protein - Caenorhabditis elegans
          Length = 628

 Score = 57.0 bits (136), Expect = 2e-08
 Identities = 38/135 (28%), Positives = 69/135 (50%), Gaps = 8/135 (5%)

Query: 3   CAAEFDFMEKETPLRYTKTXXXXXXXXXXXXXXRKIISDMWGVLAKQQTHVRKHQFDHGE 62
           C+AEFDF++  T  +   T                 + +   +L +    +     ++GE
Sbjct: 342 CSAEFDFIQYSTIEKLCGTLLIPLALISLVTFVFNFVKNT-NLLWRNSEEIG----ENGE 396

Query: 63  LVYHALQLLAYTALGILIMRLKLFLTPYMCVMASLICSRQLFGW--LFCKVHPGAIVFVI 120
           ++Y+ +QL   T +  LIMRLKLF+TP++C++A+L  + +L G   +   +   A+V VI
Sbjct: 397 ILYNVVQLCCSTVMAFLIMRLKLFMTPHLCIVAALFANSKLLGGDRISKTIRVSALVGVI 456

Query: 121 LAAMSIQGSANLQTQ 135
            A +  +G  N++ Q
Sbjct: 457 -AILFYRGIPNIRQQ 470


>PIR2:T21398 hypothetical protein F26D2.1 - Caenorhabditis elegans
          Length = 346

 Score = 32.7 bits (73), Expect = 0.40
 Identities = 20/71 (28%), Positives = 41/71 (57%), Gaps = 11/71 (15%)

Query: 66  HALQLLAYTALGILIMRLKLFLTPYMCV---------MASLICSRQLFGWLFCKVHPGAI 116
           + + ++A+ +LGI+   L++F+ PY+ V         +++ I ++ L  WLF  +  G +
Sbjct: 40  YRIMIVAFASLGIIYSGLEVFIKPYLHVYNNCILYFSLSTWISAKPLLPWLFA-IWSG-M 97

Query: 117 VFVILAAMSIQ 127
             V++A +SIQ
Sbjct: 98  YLVVIAFISIQ 108


>PIR1:WMBELM membrane protein LMP-2A - human herpesvirus 4
          Length = 497

 Score = 32.3 bits (72), Expect = 0.53
 Identities = 26/79 (32%), Positives = 38/79 (47%), Gaps = 4/79 (5%)

Query: 67  ALQLLAYTALGILIMRLKLFLTPYMCVMASLICSR----QLFGWLFCKVHPGAIVFVILA 122
           AL LLA   LG L +     L     ++  LICS      L   L  ++   A+  ++LA
Sbjct: 307 ALALLASLILGTLNLTTMFLLMLLWTLVVLLICSSCSSCPLSKILLARLFLYALALLLLA 366

Query: 123 AMSIQGSANLQTQWKSTAS 141
           +  I G + LQT +KS +S
Sbjct: 367 SALIAGGSILQTNFKSLSS 385


  Database: pir
    Posted date:  Jan 3, 2002  1:13 PM
  Number of letters in database: 93,460,074
  Number of sequences in database:  274,514
  
Lambda     K      H
   0.329    0.137    0.426 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,034,208
Number of Sequences: 274514
Number of extensions: 620007
Number of successful extensions: 1381
Number of sequences better than  1.0: 3
Number of HSP's better than  1.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 1379
Number of HSP's gapped (non-prelim): 3
length of query: 146
length of database: 93,460,074
effective HSP length: 102
effective length of query: 44
effective length of database: 65,459,646
effective search space: 2880224424
effective search space used: 2880224424
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 70 (31.6 bits)
