BLASTN 2.1.2 [Oct-19-2000]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= AE003528 Drosophila melanogaster genomic scaffold
142000013386050 section 40 of 54, complete sequence.
         (283,821 letters)

Database: ecoli.nt
           400 sequences; 4,662,239 total letters

Searching.................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AE000450.1|AE000450 Escherichia coli K-12 MG1655 section 340 ...    60  1e-06
gb|AE000359.1|AE000359 Escherichia coli K-12 MG1655 section 249 ...    48  0.004
gb|AE000281.1|AE000281 Escherichia coli K-12 MG1655 section 171 ...    40  1.1
gb|AE000274.1|AE000274 Escherichia coli K-12 MG1655 section 164 ...    40  1.1
gb|AE000117.1|AE000117 Escherichia coli K-12 MG1655 section 7 of...    40  1.1
gb|AE000502.1|AE000502 Escherichia coli K-12 MG1655 section 392 ...    38  4.3
gb|AE000454.1|AE000454 Escherichia coli K-12 MG1655 section 344 ...    38  4.3
gb|AE000443.1|AE000443 Escherichia coli K-12 MG1655 section 333 ...    38  4.3
gb|AE000404.1|AE000404 Escherichia coli K-12 MG1655 section 294 ...    38  4.3
gb|AE000369.1|AE000369 Escherichia coli K-12 MG1655 section 259 ...    38  4.3
gb|AE000287.1|AE000287 Escherichia coli K-12 MG1655 section 177 ...    38  4.3
gb|AE000283.1|AE000283 Escherichia coli K-12 MG1655 section 173 ...    38  4.3
gb|AE000253.1|AE000253 Escherichia coli K-12 MG1655 section 143 ...    38  4.3
gb|AE000201.1|AE000201 Escherichia coli K-12 MG1655 section 91 o...    38  4.3

>gb|AE000450.1|AE000450 Escherichia coli K-12 MG1655 section 340 of 400 of the complete genome
          Length = 11414

 Score = 60.0 bits (30), Expect = 1e-06
 Identities = 36/38 (94%)
 Strand = Plus / Minus

                                                   
Query: 79116 gacatcatcgccattctgggaatggatgaactgtctga 79153
             |||||||||||||| ||||| |||||||||||||||||
Sbjct: 4712  gacatcatcgccatcctgggtatggatgaactgtctga 4675


 Score = 40.1 bits (20), Expect = 1.1
 Identities = 23/24 (95%)
 Strand = Plus / Minus

                                     
Query: 78617 tggccagatgaacgagcccccggg 78640
             |||||||||||||||||| |||||
Sbjct: 5208  tggccagatgaacgagccgccggg 5185


>gb|AE000359.1|AE000359 Escherichia coli K-12 MG1655 section 249 of 400 of the complete genome
          Length = 11001

 Score = 48.1 bits (24), Expect = 0.004
 Identities = 24/24 (100%)
 Strand = Plus / Minus

                                      
Query: 193000 tgttgctgctgttgcagattgctg 193023
              ||||||||||||||||||||||||
Sbjct: 10696  tgttgctgctgttgcagattgctg 10673


>gb|AE000281.1|AE000281 Escherichia coli K-12 MG1655 section 171 of 400 of the complete genome
          Length = 11855

 Score = 40.1 bits (20), Expect = 1.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 211974 ataaatatgtgcaccattagtaac 211997
              |||||||||||| |||||||||||
Sbjct: 3068   ataaatatgtgcgccattagtaac 3091


>gb|AE000274.1|AE000274 Escherichia coli K-12 MG1655 section 164 of 400 of the complete genome
          Length = 13793

 Score = 40.1 bits (20), Expect = 1.1
 Identities = 23/24 (95%)
 Strand = Plus / Plus

                                      
Query: 227803 ctggagatgctggaaatgctcact 227826
              |||||||||||||||||| |||||
Sbjct: 3532   ctggagatgctggaaatggtcact 3555


>gb|AE000117.1|AE000117 Escherichia coli K-12 MG1655 section 7 of 400 of the complete genome
          Length = 13416

 Score = 40.1 bits (20), Expect = 1.1
 Identities = 20/20 (100%)
 Strand = Plus / Minus

                                
Query: 2754 gctgctgctgttgctgccac 2773
            ||||||||||||||||||||
Sbjct: 3441 gctgctgctgttgctgccac 3422


>gb|AE000502.1|AE000502 Escherichia coli K-12 MG1655 section 392 of 400 of the complete genome
          Length = 11313

 Score = 38.2 bits (19), Expect = 4.3
 Identities = 22/23 (95%)
 Strand = Plus / Plus

                                     
Query: 171913 ttttatgtagattttacttgtta 171935
              |||||||| ||||||||||||||
Sbjct: 428    ttttatgttgattttacttgtta 450


>gb|AE000454.1|AE000454 Escherichia coli K-12 MG1655 section 344 of 400 of the complete genome
          Length = 12175

 Score = 38.2 bits (19), Expect = 4.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 176663 agacaaatttatgagcgtt 176681
              |||||||||||||||||||
Sbjct: 9769   agacaaatttatgagcgtt 9751


>gb|AE000443.1|AE000443 Escherichia coli K-12 MG1655 section 333 of 400 of the complete genome
          Length = 11577

 Score = 38.2 bits (19), Expect = 4.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 160348 gcatttgttgtttgcggac 160366
              |||||||||||||||||||
Sbjct: 8826   gcatttgttgtttgcggac 8844


>gb|AE000404.1|AE000404 Escherichia coli K-12 MG1655 section 294 of 400 of the complete genome
          Length = 14000

 Score = 38.2 bits (19), Expect = 4.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 193629 ttagcgaccaccacgtcgg 193647
              |||||||||||||||||||
Sbjct: 13496  ttagcgaccaccacgtcgg 13478


>gb|AE000369.1|AE000369 Escherichia coli K-12 MG1655 section 259 of 400 of the complete genome
          Length = 9720

 Score = 38.2 bits (19), Expect = 4.3
 Identities = 22/23 (95%)
 Strand = Plus / Minus

                                    
Query: 50797 catcaatattattgaatatttca 50819
             ||||| |||||||||||||||||
Sbjct: 869   catcactattattgaatatttca 847


>gb|AE000287.1|AE000287 Escherichia coli K-12 MG1655 section 177 of 400 of the complete genome
          Length = 10876

 Score = 38.2 bits (19), Expect = 4.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                
Query: 94068 tcaccagccagccgctgcc 94086
             |||||||||||||||||||
Sbjct: 443   tcaccagccagccgctgcc 461


>gb|AE000283.1|AE000283 Escherichia coli K-12 MG1655 section 173 of 400 of the complete genome
          Length = 10857

 Score = 38.2 bits (19), Expect = 4.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 104663 acgttagcggcactgactc 104681
              |||||||||||||||||||
Sbjct: 893    acgttagcggcactgactc 875


>gb|AE000253.1|AE000253 Escherichia coli K-12 MG1655 section 143 of 400 of the complete genome
          Length = 10582

 Score = 38.2 bits (19), Expect = 4.3
 Identities = 19/19 (100%)
 Strand = Plus / Minus

                                 
Query: 191578 cgttgaaaatggaaatctt 191596
              |||||||||||||||||||
Sbjct: 2595   cgttgaaaatggaaatctt 2577


>gb|AE000201.1|AE000201 Escherichia coli K-12 MG1655 section 91 of 400 of the complete genome
          Length = 11275

 Score = 38.2 bits (19), Expect = 4.3
 Identities = 19/19 (100%)
 Strand = Plus / Plus

                                 
Query: 249230 tggctgctgctccagttgt 249248
              |||||||||||||||||||
Sbjct: 2297   tggctgctgctccagttgt 2315


  Database: ecoli.nt
    Posted date:  Jun 14, 2001  3:27 PM
  Number of letters in database: 4,662,239
  Number of sequences in database:  400
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 592338
Number of Sequences: 400
Number of extensions: 592338
Number of successful extensions: 42599
Number of sequences better than 10.0: 14
length of query: 283821
length of database: 4,662,239
effective HSP length: 20
effective length of query: 283801
effective length of database: 4,654,239
effective search space: 1320877682439
effective search space used: 1320877682439
T: 0
A: 0
X1: 6 (11.9 bits)
X2: 10 (19.8 bits)
S1: 12 (24.3 bits)
S2: 19 (38.2 bits)
