GENSCAN 1.0	Date run:  1-Aug-100	Time: 16:43:38

Sequence HSBA536C5 : 168628 bp : 49.21% C+G : Isochore 2 (43 - 51 C+G%)

Parameter matrix: HumanIso.smat

Predicted genes/exons:

Gn.Ex Type S .Begin ...End .Len Fr Ph I/Ac Do/T CodRg P.... Tscr..
----- ---- - ------ ------ ---- -- -- ---- ---- ----- ----- ------

 2.04 PlyA -   7901   7896    6                               1.05
 2.03 Term -  10642  10463  180  1  0   28   43   120 0.957  -0.89
 2.02 Intr -  11044  10815  230  2  2   84   44   310 0.981  23.79
 2.01 Init -  14499  13650  850  0  1  126   53  2079 0.818 202.23
 2.00 Prom -  16112  16073   40                              -5.56

 3.00 Prom +  18327  18366   40                              -5.06
 3.01 Init +  18680  18726   47  1  2   84  105    30 0.585   4.46
 3.02 Intr +  23250  23284   35  0  2  151   69    35 0.533   5.77
 3.03 Term +  26615  26664   50  0  2  108   43    36 0.267  -1.43
 3.04 PlyA +  27305  27310    6                               1.05

 8.32 PlyA - 114694 114689    6                               1.05
 8.31 Term - 117609 117581   29  1  2  139   37    35 0.986   1.74
 8.30 Intr - 118004 117913   92  1  2  126   77   101 0.988  12.44
 8.29 Intr - 121211 121110  102  1  0   85   89    95 0.997   8.59
 8.28 Intr - 121457 121327  131  2  2  130   51   125 0.999  12.49
 8.27 Intr - 125623 125478  146  2  2  108   92   121 0.958  14.50
 8.26 Intr - 126663 126540  124  0  1  113   58   151 0.981  14.76
 8.25 Intr - 127050 126896  155  1  2   72   91   196 0.685  18.09
 8.24 Intr - 128563 128395  169  1  1   91   72   343 0.999  32.52
 8.23 Intr - 129031 128881  151  0  1   68   95   202 0.996  19.06
 8.22 Intr - 129561 129425  137  0  2  113   94   171 0.999  19.57
 8.21 Intr - 131557 131385  173  2  2  121   94    69 0.957  10.46
 8.20 Intr - 131891 131702  190  2  1  126   66   153 0.780  16.06
 8.19 Intr - 135872 135738  135  2  0   37   92   171 0.802  13.16
 8.18 Intr - 136182 136073  110  1  2  139   33   122 0.867  11.80
 8.17 Intr - 136622 136424  199  2  1   96   22   400 0.999  33.12
 8.16 Intr - 138994 138726  269  2  2   89   74   152 0.257  11.15
 8.15 Intr - 143743 143626  118  1  1  100   63   113 0.289  10.04
 8.14 Intr - 144150 144016  135  0  0   43  100   129 0.999  10.36
 8.13 Intr - 147107 146994  114  2  0  102   91   154 0.995  17.74
 8.12 Intr - 148107 147904  204  0  0  104   92    97 0.839  11.10
 8.11 Intr - 149987 149928   60  2  0  114  113    90 0.999  13.03
 8.10 Intr - 151157 150965  193  1  1   75   77   125 0.355   9.59
 8.09 Intr - 161359 161278   82  2  1  105   95    51 0.520   6.20
 8.08 Intr - 163259 163168   92  1  2  117   91   174 0.980  20.24
 8.07 Intr - 163512 163411  102  2  0  141   89    85 0.999  13.19
 8.06 Intr - 166251 166121  131  0  2  113   81   212 0.999  22.49
 8.05 Intr - 166582 166437  146  2  2  111   92   215 0.999  24.20
 8.04 Intr - 166905 166782  124  0  1  107   70   221 0.999  22.36
 8.03 Intr - 167313 167159  155  1  2  116   89   268 0.999  29.49
 8.02 Intr - 167718 167550  169  0  1   96   72   360 0.999  34.72
 8.01 Intr - 168007 167857  151  0  1   75   99   227 0.984  22.66

Predicted peptide sequence(s):

Predicted coding sequence(s):


>HSBA536C5|GENSCAN_predicted_peptide_2|419_aa
MAQENAAFSPGQEEPPRRRGRQRYVEKDGRCNVQQGNVRETYRYLTDLFTTLVDLQWRLS
LLFFVLAYALTWLFFGAIWWLIAYGRGDLEHLEDTAWTPCVNNLNGFVAAFLFSIETETT
IGYGHRVITDQCPEGIVLLLLQAILGSMVNAFMVGCMFVKISQPNKRAATLVFSSHAVVS
LRDGRLCLMFRVGDLRSSHIVEASIRAKLIRSRQTLEGEFIPLHQTDLSVGFDTGDDRLF
LVSPLVISHEIDAASPFWEASRRALERDDFEIVVILEGMVEATGMTCQARSSYLVDEGLW
GHRFTSVLTLEDGFYEVDYASFHETFEVPTPSCSARELAEAAARLDAHLYWSIPSRLDEK
RVSPRCDQLPPDPCGRPGARHRYMGNCISEVVEEEEEEEGKAPGNVLKLESPRPPEPQV

>HSBA536C5|GENSCAN_predicted_CDS_2|1260_bp
atggcgcaggagaacgcggccttctcgcccgggcaggaggagccgccgcggcgccgcggc
cgccagcgctacgtggagaaggatggccggtgcaacgtgcagcagggcaacgtgcgcgag
acataccgctacctgacggacctgttcaccacgctggtggacctgcagtggcgcctcagc
ctgttgttcttcgtcctggcctacgcgctcacctggctcttcttcggcgccatctggtgg
ctgatcgcctacggccgcggcgacctggagcacctggaggacaccgcgtggacgccgtgc
gtcaacaacctcaacggcttcgtggccgccttcctcttctccatcgagaccgagaccacc
atcggctacgggcaccgcgtcatcaccgaccagtgccccgagggcatcgtgctgctgctg
ctgcaggccatcctgggctccatggtgaacgccttcatggtgggctgcatgttcgtcaag
atctcgcagcccaacaagcgcgcagccacgctcgtcttctcctcgcacgccgtggtgtcg
ctgcgcgacgggcgcctctgcctcatgttccgcgtgggcgacttgcgctcctcacacata
gtggaggcctccatccgcgccaagctcatccgctcgcgccagacgctggagggcgagttc
atcccgctgcaccagaccgacctcagcgtgggcttcgacacgggagacgaccgcctcttc
ctcgtctcgccgctggttatcagccacgagatcgacgccgccagccccttctgggaggcg
tcgcgccgtgccctcgagagggacgacttcgagatcgtcgttatcctcgagggcatggtg
gaagccacgggaatgacatgccaagctcggagctcctacctggtagacgaggggctgtgg
ggccaccgcttcacgtcagtgctgactctggaggacggcttctacgaagtggactatgcc
agctttcacgagacttttgaggtgcccacaccttcgtgcagtgctcgagagctggcagag
gctgccgcccgccttgatgcccatctctactggtccatccccagccggctggatgagaag
agagtgagtccaaggtgtgaccagcttcctccagacccctgtggcagaccgggggccaga
cacagatacatggggaactgcatatcggaggtggtggaggaggaggaggaggaggaaggc
aaagcccctggaaatgtgctaaagttggaaagtccccgtcccccagaacctcaagtctag

>HSBA536C5|GENSCAN_predicted_peptide_3|43_aa
MNTAAINIHRQIFMWTSSVVKTSFTVTFSSPGVIPPRLPYARE

>HSBA536C5|GENSCAN_predicted_CDS_3|132_bp
atgaatacagctgctataaacatccatcggcagattttcatgtggacgtcttctgtggtg
aagacctccttcactgtgaccttctcctcaccaggtgtgatcccccccaggctcccctat
gcccgtgaatga

>HSBA536C5|GENSCAN_predicted_peptide_8|1429_aa
XEAKACVVHGSDLKDMTSEQLDEILKNHTEIVFARTSPQQKLIIVEGCQRQGAIVAVTGD
GVNDSPALKKADIGIAMGISGSDVSKQAADMILLDDNFASIVTGVEEGRLIFDNLKKSIA
YTLTSNIPEITPFLLFIIANIPLPLGTVTILCIDLGTDMVPAISLAYEAAESDIMKRQPR
NSQTDKLVNERLISMAYGQIGMIQALGGFFTYFVILAENGFLPSRLLGIRLDWDDRTMND
LEDSYGQEWTYEQRKVVEFTCHTAFFASIVVVQWADLIICKTRRNSVFQQGMKNKILIFG
LLEETALAAFLSYCPGMGVALRMYPLKVTWWFCAFPYSLLIFIYDEVRKLILRRYPGDLA
ITKGSSGECKSLRLEKVDLSPSRGCFLPTVELGQLFLGIAMGLWGKKGTVAPHDQSPRRR
PKKGLIKKKMVKREKQKRNMEELKKEVVMDDHKLTLEELSTKYSVDLTKGHSHQRAKEIL
TRGGPNTVTPPPTTPEWVKFCKQLFGGFSLLLWTGAILCFVAYSIQIYFNEEPTKDNLYL
SIVLSVVVIVTGCFSYYQEAKSSKIMESFKNMVPQQALVIRGGEKMQINVQEVVLGDLVE
IKGGDRVPADLRLISAQGCKVDNSSLTGESEPQSRSPDFTHENPLETRNICFFSTNCVEG
TARGIVIATGDSTVMGRIASLTSGLAVGQTPIAAEIEHFIHLITVVAVFLGVTFFALSLL
LGYGWLEAIIFLIGIIVANVPEGLLATVTVCLTLTAKRMARKNCLVKNLEAVETLGSTST
ICSDKTGTLTQNRMTVAHMWFDMTVYEADTTEEQTGKTFTKSSDTWFMLARIAGLCNRAD
FKANQEILPIAKRATTGDASESALLKFIEQSYSSVAEMREKNPKVAEIPFNSTNKYQMSI
HLREDSSQTHVLMMKGAPERILEFCSTFLLNGQEYSMNDEMKEAFQNAYLELGGLGERVL
GFCFLNLPSSFSKGFPFNTDEINFPMDNLCFVGLISMIDPPRAAVPDAVSKCRSAGIKVI
MVTGDHPITAKAIAKGVGIISEGTETAEEVAARLKIPISKVDASAAKAIVVHGAELKDIQ
SKQLDQILQNHPEIVFARTSPQQKLIIVEGCQRLGAVVAVTGDGVNDSPALKKADIGIAM
GISGSDVSKQAADMILLDDNFASIVTGVEEGRLIFDNLKKSIMYTLTSNIPEITPFLMFI
ILGIPLPLGTITILCIDLGTDMVPAISLAYESAESDIMKRLPRNPKTDNLVNHRLIGMAY
GQIGMIQALAGFFTYFVILAENGFRPVDLLGIRLHWEDKYLNDLEDSYGQQWTYEQRKVV
EFTCQTAFFVTIVVVQWADLIISKTRRNSLFQQGMRNKVLIFGILEETLLAAFLSYTPGM
DVALRMYPLKITWWLCAIPYSILIFVYDEIRKLLIRQHPDGWVERETYY

>HSBA536C5|GENSCAN_predicted_CDS_8|4290_bp
[encoded data, 4331 characters]
ggctgggtggaaagggagacgtactactaa


Explanation

Gn.Ex : gene number, exon number (for reference)
Type  : Init = Initial exon
        Intr = Internal exon
        Term = Terminal exon
        Sngl = Single-exon gene
        Prom = Promoter
        PlyA = poly-A signal
S     : DNA strand (+ = input strand; - = opposite strand)
Begin : beginning of exon or signal (numbered on input strand)
End   : end point of exon or signal (numbered on input strand)
Len   : length of exon or signal (bp)
Fr    : reading frame (a codon ending at x is in frame f = x mod 3)
Ph    : net phase of exon (length mod 3)
I/Ac  : initiation signal or acceptor splice site score (x 10)
Do/T  : donor splice site or termination signal score (x 10)
CodRg : coding region score (x 10)
P     : probability of exon (sum over all parses containing exon)
Tscr  : exon score (depends on length, I/Ac, Do/T and CodRg scores)

Comments

The SCORE of a predicted feature (e.g., exon or splice site) is a
log-odds measure of the quality of the feature based on local sequence
properties. Thus, for example, a predicted donor splice site with
score > 100 is excellent; 50-100 is acceptable; 0-50 is weak; and
below 0 is poor (probably not a real donor site).

The PROBABILITY of a predicted exon is the estimated probability under
GENSCAN's model of genomic sequence structure that the exon is correct.
This probability depends in general on global as well as local sequence
properties.  This information can be used to assess the reliability of the
predicted exon, e.g., it would be better to design PCR primers based on
a predicted exon with probability > 0.95 than one with lower probability.

