# phmmer :: search a protein sequence against a protein database
# HMMER 3.1b1 (May 2013); http://hmmer.org/
# Copyright (C) 2013 Howard Hughes Medical Institute.
# Freely distributed under the GNU General Public License (GPLv3).
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
# query sequence file:             /tmp/task-hmmsearch-TCHn9R/ZRkI2xwebU
# target sequence database:        /cath/data/v4_0_0/release_data/CathDomainSeqs.COMBS
# output directed to file:         /tmp/phmmer.out
# sequence reporting threshold:    E-value <= 0.01
# - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query:       A0R3R7  [L=762]
Scores for complete sequences (score includes all domains):
   --- full sequence ---   --- best 1 domain ---    -#dom-
    E-value  score  bias    E-value  score  bias    exp  N  Sequence                           Description
    ------- ------ -----    ------- ------ -----   ---- --  --------                           -----------
    2.1e-55  191.8   3.7    2.3e-55  191.7   3.7    1.0  1  cath|4_0_0|1vs0A03/639-759          
    2.1e-55  191.8   3.7    2.3e-55  191.7   3.7    1.0  1  cath|4_0_0|1vs0B03/639-759          
    1.9e-46  162.2   0.2    2.1e-46  162.1   0.2    1.0  1  cath|4_0_0|1vs0A02/484-593          
    1.9e-46  162.2   0.2    2.1e-46  162.1   0.2    1.0  1  cath|4_0_0|1vs0B02/484-593          
    5.8e-17   64.7   1.4    7.1e-10   41.3   0.1    2.0  2  cath|4_0_0|1vs0A01/453-483_594-638  
    5.8e-17   64.7   1.4    7.1e-10   41.3   0.1    2.0  2  cath|4_0_0|1vs0B01/453-483_594-638  
    6.4e-07   31.5   0.1    8.1e-07   31.2   0.1    1.0  1  cath|4_0_0|2cfmA03/422-561          
    0.00065   21.6   0.0    0.00069   21.5   0.0    1.0  1  cath|4_0_0|1x9nA03/571-696          


Domain annotation for each sequence (and alignments):
>> cath|4_0_0|1vs0A03/639-759  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  191.7   3.7   7.9e-60   2.3e-55     642     761 ..       1     120 [.       1     121 [] 0.99

  Alignments for each domain:
  == domain 1  score: 191.7 bits;  conditional E-value: 7.9e-60
                      A0R3R7 642 wntqevviggwrqgeggrssgigalvlgipgpeglqfvgrvgtgftekelsklkdmlkplhtdespfnaplpkvdargvtfvr 724
                                 wntqevviggwr geggrssg+g+l+ gipgp glqf grvgtg++e+el+ lk+ l plhtdespf+ plp  da+g+t+v+
  cath|4_0_0|1vs0A03/639-759   1 WNTQEVVIGGWRAGEGGRSSGVGSLLXGIPGPGGLQFAGRVGTGLSERELANLKEXLAPLHTDESPFDVPLPARDAKGITYVK 83 
                                 *********************************************************************************** PP

                      A0R3R7 725 pelvgevrysertsdgrlrqpswrglrpdktpdevvw 761
                                 p lv+evryse t +grlrq swrglrpdk p evv 
  cath|4_0_0|1vs0A03/639-759  84 PALVAEVRYSEWTPEGRLRQSSWRGLRPDKKPSEVVR 120
                                 ***********************************96 PP

>> cath|4_0_0|1vs0B03/639-759  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  191.7   3.7   7.9e-60   2.3e-55     642     761 ..       1     120 [.       1     121 [] 0.99

  Alignments for each domain:
  == domain 1  score: 191.7 bits;  conditional E-value: 7.9e-60
                      A0R3R7 642 wntqevviggwrqgeggrssgigalvlgipgpeglqfvgrvgtgftekelsklkdmlkplhtdespfnaplpkvdargvtfvr 724
                                 wntqevviggwr geggrssg+g+l+ gipgp glqf grvgtg++e+el+ lk+ l plhtdespf+ plp  da+g+t+v+
  cath|4_0_0|1vs0B03/639-759   1 WNTQEVVIGGWRAGEGGRSSGVGSLLXGIPGPGGLQFAGRVGTGLSERELANLKEXLAPLHTDESPFDVPLPARDAKGITYVK 83 
                                 *********************************************************************************** PP

                      A0R3R7 725 pelvgevrysertsdgrlrqpswrglrpdktpdevvw 761
                                 p lv+evryse t +grlrq swrglrpdk p evv 
  cath|4_0_0|1vs0B03/639-759  84 PALVAEVRYSEWTPEGRLRQSSWRGLRPDKKPSEVVR 120
                                 ***********************************96 PP

>> cath|4_0_0|1vs0A02/484-593  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  162.1   0.2     7e-51   2.1e-46     487     596 ..       1     110 []       1     110 [] 0.99

  Alignments for each domain:
  == domain 1  score: 162.1 bits;  conditional E-value: 7e-51
                      A0R3R7 487 gyrviidadhgqlqirsrtgrevtgeypqfkalaadlaehhvvldgeavaldesgvpsfgqmqnrarstrvefwafdilwldg 569
                                 gyr++++adhg +++rsr+gr+vt+eypq++ala dla+hhvvldgeav ld sgvpsf+q qnr r trvefwafd+l+ldg
  cath|4_0_0|1vs0A02/484-593   1 GYRLLVEADHGAVRLRSRSGRDVTAEYPQLRALAEDLADHHVVLDGEAVVLDSSGVPSFSQXQNRGRDTRVEFWAFDLLYLDG 83 
                                 8********************************************************************************** PP

                      A0R3R7 570 rsllrakysdrrkilealadggglivp 596
                                 r+ll  +y drrk+le la++ +l vp
  cath|4_0_0|1vs0A02/484-593  84 RALLGTRYQDRRKLLETLANATSLTVP 110
                                 *********************999998 PP

>> cath|4_0_0|1vs0B02/484-593  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !  162.1   0.2     7e-51   2.1e-46     487     596 ..       1     110 []       1     110 [] 0.99

  Alignments for each domain:
  == domain 1  score: 162.1 bits;  conditional E-value: 7e-51
                      A0R3R7 487 gyrviidadhgqlqirsrtgrevtgeypqfkalaadlaehhvvldgeavaldesgvpsfgqmqnrarstrvefwafdilwldg 569
                                 gyr++++adhg +++rsr+gr+vt+eypq++ala dla+hhvvldgeav ld sgvpsf+q qnr r trvefwafd+l+ldg
  cath|4_0_0|1vs0B02/484-593   1 GYRLLVEADHGAVRLRSRSGRDVTAEYPQLRALAEDLADHHVVLDGEAVVLDSSGVPSFSQXQNRGRDTRVEFWAFDLLYLDG 83 
                                 8********************************************************************************** PP

                      A0R3R7 570 rsllrakysdrrkilealadggglivp 596
                                 r+ll  +y drrk+le la++ +l vp
  cath|4_0_0|1vs0B02/484-593  84 RALLGTRYQDRRKLLETLANATSLTVP 110
                                 *********************999998 PP

>> cath|4_0_0|1vs0A01/453-483_594-638  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.0   0.1   4.2e-09   0.00012     459     487 ..       7      35 ..       4      37 .. 0.93
   2 !   41.3   0.1   2.4e-14   7.1e-10     598     640 ..      36      78 ..      34      79 .] 0.96

  Alignments for each domain:
  == domain 1  score: 24.0 bits;  conditional E-value: 4.2e-09
                              A0R3R7 459 edfapmlategsvakykakqwafegkwdg 487
                                         +++ap lat g+va  ka qwafeg wd 
  cath|4_0_0|1vs0A01/453-483_594-638   7 DNLAPXLATHGTVAGLKASQWAFEGXWDE 35 
                                         578************************95 PP

  == domain 2  score: 41.3 bits;  conditional E-value: 2.4e-14
                              A0R3R7 598 qlpgdgpeamehvrkkrfegvvakkwdstyqpgrrssswikdk 640
                                          lpgdg +a+   rk  +egv+ak+ ds yqpgrr +sw+kdk
  cath|4_0_0|1vs0A01/453-483_594-638  36 LLPGDGAQAFACSRKHGWEGVIAKRRDSRYQPGRRCASWVKDK 78 
                                         69****************************************8 PP

>> cath|4_0_0|1vs0B01/453-483_594-638  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   24.0   0.1   4.2e-09   0.00012     459     487 ..       7      35 ..       4      37 .. 0.93
   2 !   41.3   0.1   2.4e-14   7.1e-10     598     640 ..      36      78 ..      34      79 .] 0.96

  Alignments for each domain:
  == domain 1  score: 24.0 bits;  conditional E-value: 4.2e-09
                              A0R3R7 459 edfapmlategsvakykakqwafegkwdg 487
                                         +++ap lat g+va  ka qwafeg wd 
  cath|4_0_0|1vs0B01/453-483_594-638   7 DNLAPXLATHGTVAGLKASQWAFEGXWDE 35 
                                         578************************95 PP

  == domain 2  score: 41.3 bits;  conditional E-value: 2.4e-14
                              A0R3R7 598 qlpgdgpeamehvrkkrfegvvakkwdstyqpgrrssswikdk 640
                                          lpgdg +a+   rk  +egv+ak+ ds yqpgrr +sw+kdk
  cath|4_0_0|1vs0B01/453-483_594-638  36 LLPGDGAQAFACSRKHGWEGVIAKRRDSRYQPGRRCASWVKDK 78 
                                         69****************************************8 PP

>> cath|4_0_0|2cfmA03/422-561  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   31.2   0.1   2.7e-11   8.1e-07     646     758 ..       8     117 ..       2     120 .. 0.80

  Alignments for each domain:
  == domain 1  score: 31.2 bits;  conditional E-value: 2.7e-11
                      A0R3R7 646 evviggwrqgeggrssgigalvlgipgpeglqf..vgrvgtgftekelsklkdmlkplhtdespfnapl.pkvdargvtfvrp 725
                                 ++vi g + geg r+  +g+++lg   pe  +f  vg+vg+gft+ +l ++   lkpl   e      l pkv    vt+   
  cath|4_0_0|2cfmA03/422-561   8 DLVIIGAEWGEGRRAHLFGSFILGAYDPETGEFleVGKVGSGFTDDDLVEFTKXLKPLIIKEEGKRVWLqPKVV-IEVTYQ-- 87 
                                 456667789********************9888667**********************9988877776636664.446663.. PP

                      A0R3R7 726 elvgevrysertsdgrlrqpswrglrpdktpde 758
                                 e+    +y    s   lr p + +lr dk p++
  cath|4_0_0|2cfmA03/422-561  88 EIQKSPKY---RSGFALRFPRFVALRDDKGPED 117
                                 44444444...355689************9987 PP

>> cath|4_0_0|1x9nA03/571-696  
   #    score  bias  c-Evalue  i-Evalue hmmfrom  hmm to    alifrom  ali to    envfrom  env to     acc
 ---   ------ ----- --------- --------- ------- -------    ------- -------    ------- -------    ----
   1 !   21.5   0.0   2.3e-08   0.00069     494     585 ..       9     113 ..       1     124 [. 0.74

  Alignments for each domain:
  == domain 1  score: 21.5 bits;  conditional E-value: 2.3e-08
                      A0R3R7 494 adhgqlqirsrtgrevtgeypqfkalaadlae...hhvvldgeavalde..sgvpsfgqmqnrars........trvefwafd 563
                                  + g+++i sr  ++ tg+yp + +    +        +ld eava d     +  f  +  r r          +v ++afd
  cath|4_0_0|1x9nA03/571-696   9 LEGGEVKIFSRNQEDNTGKYPDIISRIPKIKLpsvTSFILDTEAVAWDRekKQIQPFQVLTTRKRKevdaseiqVQVCLYAFD 91 
                                 36799*****************98776665430114679*******9962256889998888877422222211345589*** PP

                      A0R3R7 564 ilwldgrsllrakysdrrkile 585
                                 +++l+g+sl+r   s rr++l 
  cath|4_0_0|1x9nA03/571-696  92 LIYLNGESLVREPLSRRRQLLR 113
                                 ******************9985 PP



Internal pipeline statistics summary:
-------------------------------------
Query model(s):                              1  (762 nodes)
Target sequences:                       235858  (38973128 residues searched)
Passed MSV filter:                      6997  (0.0296662); expected 4717.2 (0.02)
Passed bias filter:                     6066  (0.0257189); expected 4717.2 (0.02)
Passed Vit filter:                       317  (0.00134403); expected 235.9 (0.001)
Passed Fwd filter:                         9  (3.81586e-05); expected 2.4 (1e-05)
Initial search space (Z):             235858  [actual number of targets]
Domain search space  (domZ):               8  [number of targets reported over threshold]
# CPU time: 4.10u 0.03s 00:00:04.13 Elapsed: 00:00:00.62
# Mc/sec: 47899.23
//
[ok]
