BLASTP 2.0MP-WashU [12-Feb-2001] [linux-i686 01:36:08 31-Jan-2001]

Copyright (C) 1996-2000 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2000) http://blast.wustl.edu

Query=  gi|1786183|gb|AAC73113.1| (AE000111) aspartokinase I, homoserine
    dehydrogenase I [Escherichia coli]
        (820 letters)

Database:  ecoli.aa
           4289 sequences; 1,358,990 total letters.
Searching....10....20....30....40....50....60....70....80....90....100% done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

gb|AAC76922.1| (AE000468) aspartokinase II (contig by hand)    999  0.0e-00   1



>gb|AAC76922.1| (AE000468) aspartokinase II (contig by hand) 

        Length = 810

 Score = 999 (999.9 bits), Expect = 0.0e-00, P = 0.0e-00
 Identities = 250/810 (31%), Positives = 413/810 (51%)


Query:     5 KFGGTSVANAERFLRVADILESNARQGQVATVLSAPAKITNHLVAMIEKTISGQDALPNI 64
             KFGG+S+A+ + +LRVA I+   ++   +  V+SA    TN L+  ++ + + + +   +
Sbjct:    16 KFGGSSLADVKCYLRVAGIMAEYSQPDDMM-VVSAAGSTTNQLINWLKLSQTDRLSAHQV 74

Query:    65 SDAERIF-AELLTGLAAAQPGFPLAQLKTFVDQEFAQIKHVLH-GISLLGQCPDSINAAL 122
                 R +  +L++GL  A+    L  +  FV  +  ++  +L  GI+      D++ A +
Sbjct:    75 QQTLRRYQCDLISGLLPAEEADSL--ISAFVS-DLERLAALLDSGIN------DAVYAEV 125

Query:   123 ICRGEKMSIAIMAGVLEARGHNVTVIDPVEKLLAVGHYLESTVDIAESTRRIAASRI--P 180
             +  GE  S  +M+ VL  +G     +D  E L A     +  VD   S   +    +  P
Sbjct:   126 VGHGEVWSARLMSAVLNQQGLPAAWLDAREFLRAE-RAAQPQVDEGLSYPLLQQLLVQHP 184

Query:   181 ADHMVLMAGFTAGNEKGELVVLGRNGSDYSAAVLAACLRADCCEIWTDVDGVYTCDPRQV 240
                +V+  GF + N  GE V+LGRNGSDYSA  + A        IW+DV GVY+ DPR+V
Sbjct:   185 GKRLVV-TGFISRNNAGETVLLGRNGSDYSATQIGALAGVSRVTIWSDVAGVYSADPRKV 243

Query:   241 PDARLLKSMSYQEAMELSYFGAKVLHPRTITPIAQFQIPCLIKNTGNPQAPGTLIGASRD 300
              DA LL  +   EA EL+   A VLH RT+ P++  +I   ++ +  P    T I     
Sbjct:   244 KDACLLPLLRLDEASELARLAAPVLHARTLQPVSGSEIDLQLRCSYTPDQGSTRIERVLA 303

Query:   301 EDELPVKGISNLNNMAMFSVSGPGMKGMVGMAARVFAAMSRARISVVLITQSSSEYSISF 360
                   + +++ +++ +     P  +        +   + RA++  + +   +    + F
Sbjct:   304 SGT-GARIVTSHDDVCLIEFQVPASQDFKLAHKEIDQILKRAQVRPLAVGVHNDRQLLQF 362

Query:   361 CVPQSDCVRAERAMQEEFYLELKEGLLEPLAVTERLAIISVVGDGMRTLRGIS 413
             C        A + + E        GL   L + + LA++++VG G+ T   + 
Sbjct:   363 CYTSEVADSALKILDEA-------GLPGELRLRQGLALVAMVGAGV-TRNPLH 407

Query:   414 A-KFFAALARANINIVAIAQGSSERSISVVVNNDDATTGVRVTHQMLFNTDQVIEVFVIG 472
               +F+  L    +      Q     S+  V+      + ++  HQ +F  ++ I + + G
Sbjct:   408 CHRFWQQLKGQPVEFTW--QSDDGISLVAVLRTGPTESLIQGLHQSVFRAEKRIGLVLFG 465

Query:   473 VGGVGGALLEQLKRQQSWLKNKH-IDLRVCGVANSKALLTNVHGLN----LENWQEELAQ 527
              G +G   LE   R+QS L  +   +  + GV +S+  L +  GL+    L  + +E  +
Sbjct:   466 KGNIGSRWLELFAREQSTLSARTGFEFVLAGVVDSRRSLLSYDGLDASRALAFFNDEAVE 525

Query:   528 AKEPFNLGRLIRLVKEYHLLNPVIVDCTSSQAVADQYADFLREGFHVVTPNKKANTSSMD 587
               E      L   ++ +   + V++D T+SQ +ADQY DF   GFHV++ NK A  S  +
Sbjct:   526 QDEE----SLFLWMRAHPYDDLVVLDVTASQQLADQYLDFASHGFHVISANKLAGASDSN 581

Query:   588 YYHQLRYAAEKSRRKFLYDTNVGAGLPVIENLQNLLNAGDELMKFSGILSGSLSYIFGKL 647
              Y Q+  A EK+ R +LY+  VGAGLP+   +++L+++GD ++  SGI SG+LS++F + 
Sbjct:   582 KYRQIHDAFEKTGRHWLYNATVGAGLPINHTVRDLIDSGDTILSISGIFSGTLSWLFLQF 641

Query:   648 DEGMSFSEATTLAREMGYTEPDPRDDLSGMDVARKLLILARETGRELELADIEIEPVLPA 707
             D  + F+E    A + G TEPDPRDDLSG DV RKL+ILARE G  +E   + +E ++PA
Sbjct:   642 DGSVPFTELVDQAWQQGLTEPDPRDDLSGKDVMRKLVILAREAGYNIEPDQVRVESLVPA 701

Query:   708 EFNAEGDVAAFMANLSQLDDLFAARVAKARDEGKVLRYVGNIDEDGVCRVKIAEVDGNDP 767
                  G +  F  N  +L++    R+  AR+ G VLRYV   D +G  RV +  V  + P
Sbjct:   702 HCEG-GSIDHFFENGDELNEQMVQRLEAAREMGLVLRYVARFDANGKARVGVEAVREDHP 760

Query:   768 LFKVKNGENALAFYSHYYQPLPLVLRGYGAGNDVTAAGVFADLLR 812
             L  +   +N  A  S +Y+  PLV+RG GAG DVTA  + +D+ R
Sbjct:   761 LASLLPCDNVFAIESRWYRDNPLVIRGPGAGRDVTAGAIQSDINR 805


Parameters:
  E=0.01

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.319   0.136   0.384    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E    S W   T  X   E2     S2
   +0      0      820       820     0.010  93 3  11 22  0.19    34
                                                    37  0.22    37


Statistics:

  Database:  /home/jes12/db/ecoli.aa
   Title:  ecoli.aa
   Posted:  2:52:35 PM EST Nov 18, 2001
   Created:  9:46:47 AM EST Nov 18, 2001
   Format:  XDF-1
   # of letters in database:  1,358,990
   # of sequences in database:  4289
   # of database sequences satisfying E:  4
  No. of states in DFA:  573 (61 KB)
  Total size of DFA:  281 KB (1149 KB)
  Time to generate neighborhood:  0.00u 0.02s 0.02t  Elapsed: 00:00:00
  No. of threads or processors used:  1
  Search cpu time:  1.58u 0.00s 1.58t  Elapsed: 00:00:01
  Total cpu time:  1.59u 0.02s 1.61t  Elapsed: 00:00:01
  Start:  Thu Dec  6 11:09:14 2001   End:  Thu Dec  6 11:09:15 2001
