LOCUS       AAAA02000000           50231 rc    DNA     linear   PLN 11-MAR-2005
DEFINITION  Oryza sativa (indica cultivar-group) whole genome shotgun
            sequencing project.
ACCESSION   AAAA00000000
VERSION     AAAA00000000.2  GI:54362548
KEYWORDS    WGS.
SOURCE      Oryza sativa (indica cultivar-group)
  ORGANISM  Oryza sativa (indica cultivar-group)
            Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta;
            Spermatophyta; Magnoliophyta; Liliopsida; Poales; Poaceae; BEP
            clade; Ehrhartoideae; Oryzeae; Oryza.
REFERENCE   1  (bases 1 to 50231)
  AUTHORS   Yu,J., Wang,J., Lin,W., Li,S., Li,H., Zhou,J., Ni,P., Dong,W.,
            Hu,S., Zeng,C., Zhang,J., Zhang,Y., Li,R., Xu,Z., Li,S., Li,X.,
            Zheng,H., Cong,L., Lin,L., Yin,J., Geng,J., Li,G., Shi,J., Liu,J.,
            Lv,H., Li,J., Wang,J., Deng,Y., Ran,L., Shi,X., Wang,X., Wu,Q.,
            Li,C., Ren,X., Wang,J., Wang,X., Li,D., Liu,D., Zhang,X., Ji,Z.,
            Zhao,W., Sun,Y., Zhang,Z., Bao,J., Han,Y., Dong,L., Ji,J., Chen,P.,
            Wu,S., Liu,J., Xiao,Y., Bu,D., Tan,J., Yang,L., Ye,C., Zhang,J.,
            Xu,J., Zhou,Y., Yu,Y., Zhang,B., Zhuang,S., Wei,H., Liu,B., Lei,M.,
            Yu,H., Li,Y., Xu,H., Wei,S., He,X., Fang,L., Zhang,Z., Zhang,Y.,
            Huang,X., Su,Z., Tong,W., Li,J., Tong,Z., Li,S., Ye,J., Wang,L.,
            Fang,L., Lei,T., Chen,C., Chen,H., Xu,Z., Li,H., Huang,H.,
            Zhang,F., Xu,H., Li,N., Zhao,C., Li,S., Dong,L., Huang,Y., Li,L.,
            Xi,Y., Qi,Q., Li,W., Zhang,B., Hu,W., Zhang,Y., Tian,X., Jiao,Y.,
            Liang,X., Jin,J., Gao,L., Zheng,W., Hao,B., Liu,S., Wang,W.,
            Yuan,L., Cao,M., McDermott,J., Samudrala,R., Wang,J., Wong,G.K. and
            Yang,H.
  TITLE     The Genomes of Oryza sativa: A History of Duplications
  JOURNAL   PLoS Biol. 3 (2), E38 (2005)
   PUBMED   15685292
REFERENCE   2  (bases 1 to 50231)
  AUTHORS   Yu,J., Hu,S., Wang,J., Li,S., Wong,K.-S.G., Liu,B., Deng,Y.,
            Dai,L., Zhou,Y., Zhang,X., Cao,M., Liu,J., Sun,J., Tang,J.,
            Chen,Y., Huang,X., Lin,W., Ye,C., Tong,W., Cong,L., Geng,J.,
            Han,Y., Li,L., Li,W., Hu,G., Huang,X., Li,W., Li,J., Liu,Z., Li,L.,
            Liu,J., Qi,Q., Liu,J., Li,L., Wang,X., Lu,H., Wu,T., Zhu,M., Ni,P.,
            Han,H., Dong,W., Ren,X., Feng,X., Cui,P., Li,X., Wang,H., Xu,X.,
            Zhai,W., Xu,Z., Zhang,J., He,S., Zhang,J., Xu,J., Zhang,K.,
            Zheng,X., Dong,J., Zeng,W., Tao,L., Chen,X., He,J., Liu,D.,
            Tian,W., Tian,C., Xia,H., Li,G., Gao,H., Li,P., Chen,W., Wang,X.,
            Zhang,Y., Hu,J., Wang,J., Liu,S., Yang,J., Zhang,G., Bao,Q.,
            Xiong,Y., Li,Z., Mao,L., Zhou,C., Chen,R., Zhu,Z., Hao,B.,
            Zheng,W., Chen,S., Guo,W., Li,G., Liu,S., Huang,G., Tao,M.,
            Wang,J., Zhu,L., Yuan,L. and Yang,H.
  TITLE     Direct Submission
  JOURNAL   Submitted (04-JAN-2002) Beijing Genomics Institute/Center of
            Genomics & Bioinformatics, Institute of Genomics, Chinese Academy
            of Sciences, Beijing Airport Industrial Zone B6, Beijing, Beijing
            101300, P.R.China
REFERENCE   3  (bases 1 to 50231)
  AUTHORS   Yu,J., Wang,J., Lin,W., Li,S., Li,H., Zhou,J., Ni,P., Dong,W.,
            Hu,S., Zeng,C., Zhang,J., Zhang,Y., Li,R., Xu,Z., Li,S., Li,X.,
            Zheng,H., Cong,L., Lin,L., Yin,J., Geng,J., Li,G., Shi,J., Liu,J.,
            Lv,H., Li,J., Wang,J., Deng,Y., Ran,L., Shi,X., Wang,X., Wu,Q.,
            Li,C., Ren,X., Wang,J., Wang,X., Li,D., Liu,D., Zhang,X., Ji,Z.,
            Zhao,W., Sun,Y., Zhang,Z., Bao,J., Han,Y., Dong,L., Ji,J., Chen,P.,
            Wu,S., Liu,J., Xiao,Y., Bu,D., Tan,J., Yang,L., Ye,C., Zhang,J.,
            Xu,J., Zhou,Y., Yu,Y., Zhang,B., Zhuang,S., Wei,H., Liu,B., Lei,M.,
            Yu,H., Li,Y., Xu,H., Wei,S., He,X., Fang,L., Zhang,Z., Zhang,Y.,
            Huang,X., Su,Z., Tong,W., Li,J., Tong,Z., Li,S., Ye,J., Wang,L.,
            Fang,L., Lei,T., Chen,C., Chen,H., Xu,Z., Li,H., Huang,H.,
            Zhang,F., Xu,H., Li,N., Zhao,C., Li,S., Dong,L., Huang,Y., Li,L.,
            Xi,Y., Qi,Q., Li,W., Zhang,B., Hu,W., Zhang,Y., Zheng,W., Hao,B.,
            Liu,S., Wang,W., Yuan,L., Cao,M.L., McDermott,J., Samudrala,R.,
            Wang,J., Wong,G.K.-S. and Yang,H.
  TITLE     Direct Submission
  JOURNAL   Submitted (12-SEP-2003) Beijing Institute of Genomics, Chinese
            Academy of Sciences, Beijing Airport Industrial Zone B6, Beijing,
            Beijing 101300, P.R.China
COMMENT     On Oct 21, 2004 this sequence version replaced gi:19924305.
            The Oryza sativa (indica cultivar-group) whole genome shotgun (WGS)
            project has the project accession AAAA00000000.  This version of
            the project (02) has the accession number AAAA02000000, and
            consists of sequences AAAA02000001-AAAA02050231.
            The improved whole-genome shotgun (WGS) sequences for the genomes
            of indica and japonica rice, AAAA02000000 and AACV01000000,
            respectively, have multi-megabase contiguity and are nearly
            1000-fold improved over the drafts of 2002. Tested against a
            non-redundant collection of 19,079 full-length cDNAs, 98.1% of the
            genes are aligned without fragmentation to the mapped
            super-scaffolds of one or the other genome. Despite having only a
            small variation in gene content, there is an enormous variation in
            intergenic regions. At least a quarter of the two sequences could
            not be aligned, and in the aligned region
            single-nucleotide-polymorphism (SNP) rates varied from as little as
            3.0 SNP/kb in the coding regions, to 27.6 SNP/kb in the
            transposable elements.
FEATURES             Location/Qualifiers
     source          1..50231
                     /organism="Oryza sativa (indica cultivar-group)"
                     /mol_type="genomic DNA"
                     /cultivar="93-11"
                     /db_xref="taxon:39946"
WGS         AAAA02000001-AAAA02050231
WGS_SCAFLD  CM000126-CM000137
WGS_SCAFLD  CH398081-CH401163
//

