<?xml version="1.0" encoding="ISO-8859-1"?>
<!DOCTYPE game PUBLIC "game" "http://www.fruitfly.org/annot/gamexml.dtd.txt">
<!-- GAME-XML generated by Bio::SeqIO::game::gameWriter -->
<!-- Created Mon Dec 15 22:20:37 2003 -->
<!-- Questions: smckay@bcgsc.bc.ca -->

<game version="1.2">
  <seq id="L16622" length="28735" type="dna" focus="true">
    <organism>Caenorhabditis elegans</organism>
    <name>L16622</name>
    <db_xref>taxon:6239</db_xref>
    <residues>
[encoded data, 32026 characters]
      TTGGCCAGCAGTGGCCACTGCTAAAAATGAAAAAAGACGATGATGGGTGATGATC
    </residues>
  </seq>
  <map_position seq="L16622" type="dna">
    <span>
      <start>1</start>
      <end>28735</end>
    </span>
  </map_position>
  <annotation id="source">
    <name>source</name>
    <type>source</type>
    <property>
      <type>chromosome</type>
      <value>III</value>
    </property>
    <property>
      <type>clone</type>
      <value>C02D5</value>
    </property>
    <property>
      <type>db_xref</type>
      <value>taxon:6239</value>
    </property>
    <property>
      <type>mol_type</type>
      <value>genomic DNA</value>
    </property>
    <property>
      <type>organism</type>
      <value>Caenorhabditis elegans</value>
    </property>
    <property>
      <type>strain</type>
      <value>Bristol N2</value>
    </property>
    <feature_set id="source">
      <name>source</name>
      <type>source</type>
      <property>
        <type>chromosome</type>
        <value>III</value>
      </property>
      <property>
        <type>clone</type>
        <value>C02D5</value>
      </property>
      <property>
        <type>db_xref</type>
        <value>taxon:6239</value>
      </property>
      <property>
        <type>mol_type</type>
        <value>genomic DNA</value>
      </property>
      <property>
        <type>organism</type>
        <value>Caenorhabditis elegans</value>
      </property>
      <property>
        <type>strain</type>
        <value>Bristol N2</value>
      </property>
      <feature_span id="source">
        <name>source</name>
        <type>source</type>
        <seq_relationship type="query" seq="L16622">
          <span>
            <start>1</start>
            <end>28735</end>
          </span>
        </seq_relationship>
      </feature_span>
    </feature_set>
  </annotation>
  <annotation id="C02D5.3">
    <name>C02D5.3</name>
    <type>gene</type>
    <property>
      <type>gene</type>
      <value>C02D5.3</value>
    </property>
    <gene association="IS">
      <name>C02D5.3</name>
    </gene>
    <feature_set id="C02D5.3">
      <name>C02D5.3</name>
      <type>transcript</type>
      <property>
        <type>db_xref</type>
        <value>GI:32453032</value>
      </property>
      <property>
        <type>db_xref</type>
        <value>WormBase:C02D5.3</value>
      </property>
      <property>
        <type>gene</type>
        <value>C02D5.3</value>
      </property>
      <property>
        <type>note</type>
        <value>
          contains similarity to Pfam domain PF02798 
          (Glutathione S-transferase, N-terminal 
          domain)
        </value>
      </property>
      <property>
        <type>product</type>
        <value>Hypothetical protein C02D5.3</value>
      </property>
      <property>
        <type>protein_id</type>
        <value>AAO12454.2</value>
      </property>
      <property>
        <type>standard_name</type>
        <value>C02D5.3</value>
      </property>
      <feature_span produces_seq="C02D5.3" id="C02D5.3">
        <name>C02D5.3</name>
        <type>start_codon</type>
        <seq_relationship type="query" seq="L16622">
          <span>
            <start>5035</start>
            <end>5037</end>
          </span>
        </seq_relationship>
      </feature_span>
      <feature_span id="C02D5.3:1">
        <name>C02D5.3:1</name>
        <type>exon</type>
        <seq_relationship type="query" seq="L16622">
          <span>
            <start>5035</start>
            <end>5077</end>
          </span>
        </seq_relationship>
      </feature_span>
      <feature_span id="C02D5.3:2">
        <name>C02D5.3:2</name>
        <type>exon</type>
        <seq_relationship type="query" seq="L16622">
          <span>
            <start>5411</start>
            <end>5851</end>
          </span>
        </seq_relationship>
      </feature_span>
      <feature_span id="C02D5.3:3">
        <name>C02D5.3:3</name>
        <type>exon</type>
        <seq_relationship type="query" seq="L16622">
          <span>
            <start>5956</start>
            <end>6208</end>
          </span>
        </seq_relationship>
      </feature_span>
      <feature_span id="C02D5.3:4">
        <name>C02D5.3:4</name>
        <type>exon</type>
        <seq_relationship type="query" seq="L16622">
          <span>
            <start>7984</start>
            <end>8008</end>
          </span>
        </seq_relationship>
      </feature_span>
    </feature_set>
  </annotation>
  <seq id="C02D5.3" length="253" type="aa">
    <description>
      translation from_gene[C02D5.3] cds_boundaries:(L16622:5035..8008)
      transcript_info:[C02D5.3]
    </description>
    <residues>
      MTVLAGVNSKIVKNGCWNHSYLQHAILPVAQRALIYASVKNIPSDVINVHLQEKPDWYFS
      KHYKGQVPTLEHDEGKKHVIESAVIPEYLDDIYPETRILPTDPYEKVQQKLLLDRISGQV
      SPAFYGVVQAVKNPDLREEKFADIKKAYDNAEQLLTGDFYSGTSKPGFVDYLLYPNIQRA
      YWAAHIVPDFPLEAESFPGPNYPRLSKWYKALESIPEVAAASQPTENGVGFFKDYLGGSP
      NYDYGLTKLSETI
    </residues>
  </seq>
  <annotation id="C02D5.2">
    <name>C02D5.2</name>
    <type>gene</type>
    <property>
      <type>gene</type>
      <value>C02D5.2</value>
    </property>
    <gene association="IS">
      <name>C02D5.2</name>
    </gene>
    <feature_set id="C02D5.2">
      <name>C02D5.2</name>
      <type>transcript</type>
      <property>
        <type>db_xref</type>
        <value>GI:289605</value>
      </property>
      <property>
        <type>db_xref</type>
        <value>WormBase:C02D5.2</value>
      </property>
      <property>
        <type>gene</type>
        <value>C02D5.2</value>
      </property>
      <property>
        <type>note</type>
        <value>
          contains similarity to Pfam domain PF03227 
          (Gamma interferon inducible lysosomal 
          thiol reductase (GILT)); coded for 
          by the following C. elegans cDNAs: 
          CEESG21F, CEESG21R, CEESG21 
        </value>
      </property>
      <property>
        <type>product</type>
        <value>Hypothetical protein C02D5.2</value>
      </property>
      <property>
        <type>protein_id</type>
        <value>AAA27914.1</value>
      </property>
      <property>
        <type>standard_name</type>
        <value>C02D5.2</value>
      </property>
      <feature_span produces_seq="C02D5.2" id="C02D5.2">
        <name>C02D5.2</name>
        <type>start_codon</type>
        <seq_relationship type="query" seq="L16622">
          <span>
            <start>9783</start>
            <end>9785</end>
          </span>
        </seq_relationship>
      </feature_span>
      <feature_span id="C02D5.2:1">
        <name>C02D5.2:1</name>
        <type>exon</type>
        <seq_relationship type="query" seq="L16622">
          <span>
            <start>9783</start>
            <end>10002</end>
          </span>
        </seq_relationship>
      </feature_span>
      <feature_span id="C02D5.2:2">
        <name>C02D5.2:2</name>
        <type>exon</type>
        <seq_relationship type="query" seq="L16622">
          <span>
            <start>10373</start>
            <end>10509</end>
          </span>
        </seq_relationship>
      </feature_span>
      <feature_span id="C02D5.2:3">
        <name>C02D5.2:3</name>
        <type>exon</type>
        <seq_relationship type="query" seq="L16622">
          <span>
            <start>10558</start>
            <end>10661</end>
          </span>
        </seq_relationship>
      </feature_span>
      <feature_span id="C02D5.2:4">
        <name>C02D5.2:4</name>
        <type>exon</type>
        <seq_relationship type="query" seq="L16622">
          <span>
            <start>10709</start>
            <end>10825</end>
          </span>
        </seq_relationship>
      </feature_span>
      <feature_span id="C02D5.2:5">
        <name>C02D5.2:5</name>
        <type>exon</type>
        <seq_relationship type="query" seq="L16622">
          <span>
            <start>10876</start>
            <end>11052</end>
          </span>
        </seq_relationship>
      </feature_span>
      <feature_span id="C02D5.2:6">
        <name>C02D5.2:6</name>
        <type>exon</type>
        <seq_relationship type="query" seq="L16622">
          <span>
            <start>11213</start>
            <end>11429</end>
          </span>
        </seq_relationship>
      </feature_span>
    </feature_set>
  </annotation>
  <seq id="C02D5.2" length="323" type="aa">
    <description>
      translation from_gene[C02D5.2] cds_boundaries:(L16622:9783..11429)
      transcript_info:[C02D5.2]
    </description>
    <residues>
      MSKYLRTSHPSPLICRPILTFSSLHILTAFLISGNSSYINWSVTIILLILGLYACHRFLN
      MKKLTRDAQEPLLPHIRPSTRNKIRKYIYGTIFILSIFLLYRSLNSPDTSKHGIGRNGDF
      IEYEPKAGPTIKEPVENIVKLDVYMEAQCPDTSRFFRQQLKKAWDILGRLNRIELNVIPF
      GKARCTEKGNDFECQCQHGPTECQINQLMNCVIDRFGFPHRYLPGVLCMQGKYSLDEAMK
      CVTENYPSEYERMRECASGTRGRRLLALSGQKTASLTPAIDFIPWIVINGSRNSDALYDL
      TQNVCEAMQPMPSACKDYLRSLQ
    </residues>
  </seq>
  <annotation id="C02D5.1">
    <name>C02D5.1</name>
    <type>gene</type>
    <property>
      <type>gene</type>
      <value>C02D5.1</value>
    </property>
    <gene association="IS">
      <name>C02D5.1</name>
    </gene>
    <feature_set id="C02D5.1">
      <name>C02D5.1</name>
      <type>transcript</type>
      <property>
        <type>db_xref</type>
        <value>GI:15145275</value>
      </property>
      <property>
        <type>db_xref</type>
        <value>WormBase:C02D5.1</value>
      </property>
      <property>
        <type>gene</type>
        <value>C02D5.1</value>
      </property>
      <property>
        <type>note</type>
        <value>
          contains similarity to Pfam domains PF02770 
          (Acyl-CoA dehydrogenase, middle domain), 
          PF02771 (Acyl-CoA dehydrogenase, N-terminal 
          domain), PF00441 (Acyl-CoA dehydrogenases); 
          coded for by the following C. elegans 
          cDNAs: yk122b9.5 
        </value>
      </property>
      <property>
        <type>product</type>
        <value>Hypothetical protein C02D5.1</value>
      </property>
      <property>
        <type>protein_id</type>
        <value>AAA27913.2</value>
      </property>
      <property>
        <type>standard_name</type>
        <value>C02D5.1</value>
      </property>
      <feature_span produces_seq="C02D5.1" id="C02D5.1">
        <name>C02D5.1</name>
        <type>start_codon</type>
        <seq_relationship type="query" seq="L16622">
          <span>
            <start>13633</start>
            <end>13635</end>
          </span>
        </seq_relationship>
      </feature_span>
      <feature_span id="C02D5.1:1">
        <name>C02D5.1:1</name>
        <type>exon</type>
        <seq_relationship type="query" seq="L16622">
          <span>
            <start>13633</start>
            <end>13867</end>
          </span>
        </seq_relationship>
      </feature_span>
      <feature_span id="C02D5.1:2">
        <name>C02D5.1:2</name>
        <type>exon</type>
        <seq_relationship type="query" seq="L16622">
          <span>
            <start>13920</start>
            <end>14054</end>
          </span>
        </seq_relationship>
      </feature_span>
      <feature_span id="C02D5.1:3">
        <name>C02D5.1:3</name>
        <type>exon</type>
        <seq_relationship type="query" seq="L16622">
          <span>
            <start>14099</start>
            <end>14451</end>
          </span>
        </seq_relationship>
      </feature_span>
      <feature_span id="C02D5.1:4">
        <name>C02D5.1:4</name>
        <type>exon</type>
        <seq_relationship type="query" seq="L16622">
          <span>
            <start>14536</start>
            <end>14889</end>
          </span>
        </seq_relationship>
      </feature_span>
      <feature_span id="C02D5.1:5">
        <name>C02D5.1:5</name>
        <type>exon</type>
        <seq_relationship type="query" seq="L16622">
          <span>
            <start>15271</start>
            <end>15420</end>
          </span>
        </seq_relationship>
      </feature_span>
    </feature_set>
  </annotation>
  <seq id="C02D5.1" length="408" type="aa">
    <description>
      translation from_gene[C02D5.1] cds_boundaries:(L16622:13633..15420)
      transcript_info:[C02D5.1]
    </description>
    <residues>
      MAFLARKTSSLLPATTSSTVKHMIYDEPHFAMQNSLAKLIKEKINPNVAQWEKSGRYPAH
      FVFKMLGQLGVFAVNKPVDYGGTGRDFAMSIAIAEQIGAVDCGSIPMSVMVQSDMSTPAL
      AQFGSDSLRNRFLRPSINGDLVSSIAVSEPHAGSDVSAIRTHARRYGSDLIINGSKMWIT
      NGDQADWACVLVNTSNAKNLHKNKSLVCIPLDSIGVHRSTPLDKLGMRSSDTVQLFFEDV
      RVPSSYIIGEEGRGFAYQMNQFNDERLVTVAVGLLPLQKCINETIEYARERLIFGKTLLD
      QQYVQFRLAELEAELEATRSLLYRTVLARCQGEDVSMLTAMAKLKIGRLARKVTDQCLQI
      WGGAGYLNDNGISRAFRDFRIFSIGAGCDEVMMQIIHKTQSKRQQKRI
    </residues>
  </seq>
</game>
