ID   GCDH_CAEEL     STANDARD;      PRT;   409 AA.
AC   Q20772;
DT   01-NOV-1997, integrated into UniProtKB/Swiss-Prot.
DT   01-NOV-1996, sequence version 1.
DT   30-MAY-2006, entry version 44.
DE   Probable glutaryl-CoA dehydrogenase, mitochondrial precursor
DE   (EC 1.3.99.7) (GCD).
GN   ORFNames=F54D5.7;
OS   Caenorhabditis elegans.
OC   Eukaryota; Metazoa; Nematoda; Chromadorea; Rhabditida; Rhabditoidea;
OC   Rhabditidae; Peloderinae; Caenorhabditis.
OX   NCBI_TaxID=6239;
RN   [1]
RP   NUCLEOTIDE SEQUENCE [LARGE SCALE GENOMIC DNA].
RC   STRAIN=Bristol N2;
RX   MEDLINE=99069613; PubMed=9851916; DOI=10.1126/science.282.5396.2012;
RG   The C. elegans sequencing consortium;
RT   "Genome sequence of the nematode C. elegans: a platform for
RT   investigating biology.";
RL   Science 282:2012-2018(1998).
CC   -!- CATALYTIC ACTIVITY: Glutaryl-CoA + acceptor = crotonoyl-CoA +
CC       CO(2) + reduced acceptor.
CC   -!- COFACTOR: FAD (By similarity).
CC   -!- PATHWAY: Degradative pathway of L-lysine, L-hydroxylysine, and L-
CC       tryptophan metabolism.
CC   -!- INTERACTION:
CC       P39745:mpk-1; NbExp=1; IntAct=EBI-313068, EBI-321013;
CC       Q17446:pmk-1; NbExp=1; IntAct=EBI-313068, EBI-312987;
CC   -!- SUBCELLULAR LOCATION: Mitochondrion; mitochondrial matrix
CC       (Potential).
CC   -!- SIMILARITY: Belongs to the acyl-CoA dehydrogenase family.
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DR   EMBL; Z66513; CAA91333.1; -; Genomic_DNA.
DR   PIR; T22647; T22647.
DR   UniGene; Cel.30446; -.
DR   HSSP; Q06319; 1BUC.
DR   IntAct; Q20772; -.
DR   Ensembl; F54D5.7; Caenorhabditis elegans.
DR   WormBase; WBGene00010052; F54D5.7.
DR   WormPep; F54D5.7; CE03411.
DR   GO; GO:0005515; F:protein binding; IPI.
DR   InterPro; IPR006089; Acyl_CoA_DH.
DR   InterPro; IPR006091; Acyl_CoA_DH/ox_M.
DR   InterPro; IPR006090; Acyl_CoA_DH_1.
DR   InterPro; IPR006092; Acyl_CoA_DH_N.
DR   InterPro; IPR009075; AcylCo_DH/ox_C.
DR   InterPro; IPR009100; AcylCoA_DH/ox_NM.
DR   InterPro; IPR013764; AcylCoA_DH_1/2_C.
DR   Pfam; PF00441; Acyl-CoA_dh_1; 1.
DR   Pfam; PF02770; Acyl-CoA_dh_M; 1.
DR   Pfam; PF02771; Acyl-CoA_dh_N; 1.
DR   PROSITE; PS00072; ACYL_COA_DH_1; FALSE_NEG.
DR   PROSITE; PS00073; ACYL_COA_DH_2; 1.
KW   Complete proteome; FAD; Flavoprotein; Hypothetical protein;
KW   Mitochondrion; Oxidoreductase; Transit peptide.
FT   TRANSIT       1      ?       Mitochondrion (Potential).
FT   CHAIN         ?    409       Probable glutaryl-CoA dehydrogenase.
FT                                /FTId=PRO_0000000530.
FT   ACT_SITE    388    388       Proton acceptor (Potential).
SQ   SEQUENCE   409 AA;  44964 MW;  4D06241FB6768069 CRC64;
     MLTRGFTSIG KIASRGLSST FYQDAFQLSD QLTEDERSLM LSAREYCQER LLPRVTEAYR
     TEKFDPSLIP EMGSMGLLGA PYQGYGCAGT STVGYGLIAR EVERVDSGYR STMSVQTSLV
     IGPIYNYGSE DQKQKYIPDL ASGKKIGCFG LTEPNHGSNP GGMETKATWD ETTKTYKLNG
     SKTWISNSPV SDVMVVWARS ARHNNKIKGF ILERGMKGLT TPKIEGKLSL RASITGQIAM
     DDVPVPEENL LPNAEGLQGP FGCLNNARLG IAWGALGAAE ECFHLARQYT LDRQQFGRPL
     AQNQLMQLKM ADMLTEISLG LQGCLRVSRL KDEGKVQSEQ ISIIKRNSCG KALEVARKAR
     DMLGGNGIVD EYHIMRHMVN LETVNTYEGT HDVHALILGR AITGLNGFC
//
ID   Q41V66_FERAC   PRELIMINARY;   PRT;   607 AA.
AC   Q41V66;
DT   27-SEP-2005, integrated into UniProtKB/TrEMBL.
DT   27-SEP-2005, sequence version 1.
DT   30-MAY-2006, entry version 5.
DE   Glycoside hydrolase, family 15.
GN   ORFNames=FaciDRAFT_1685;
OS   Ferroplasma acidarmanus Fer1.
OC   Archaea; Euryarchaeota; Thermoplasmata; Thermoplasmatales;
OC   Ferroplasmaceae; Ferroplasma.
OX   NCBI_TaxID=333146;
RN   [1]
RP   NUCLEOTIDE SEQUENCE.
RC   STRAIN=Fer1;
RG   US DOE Joint Genome Institute (JGI-PGF);
RA   Copeland A., Lucas S., Lapidus A., Barry K., Detter C., Glavina T.,
RA   Hammon N., Israni S., Pitluck S., Richardson P.;
RT   "Sequencing of the draft genome and assembly of Ferroplasma
RT   acidarmanus fer1.";
RL   Submitted (JUN-2005) to the EMBL/GenBank/DDBJ databases.
RN   [2]
RP   NUCLEOTIDE SEQUENCE.
RC   STRAIN=Fer1;
RG   US DOE Joint Genome Institute (JGI-ORNL);
RA   Larimer F., Land M.;
RT   "Annotation of the draft genome assembly of Ferroplasma acidarmanus
RT   fer1.";
RL   Submitted (JUN-2005) to the EMBL/GenBank/DDBJ databases.
RN   [3]
RP   NUCLEOTIDE SEQUENCE.
RC   STRAIN=Fer1;
RG   US DOE Joint Genome Institute (JGI-PGF);
RA   Copeland A., Lucas S., Lapidus A., Barry K., Detter C., Glavina T.,
RA   Hammon N., Israni S., Pitluck S., Richardson P.;
RL   Submitted (JUN-2005) to the EMBL/GenBank/DDBJ databases.
CC   -!- CAUTION: The sequence shown here is derived from an
CC       EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is
CC       preliminary data.
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DR   EMBL; AABC04000001; EAM94575.1; -; Genomic_DNA.
DR   GO; GO:0004339; F:glucan 1,4-alpha-glucosidase activity; IEA.
DR   GO; GO:0016787; F:hydrolase activity; IEA.
DR   GO; GO:0005976; P:polysaccharide metabolism; IEA.
DR   InterPro; IPR008928; 6hp_glycosidase.
DR   InterPro; IPR011613; Glyco_hydro_15_rel.
DR   InterPro; IPR012343; Glyco_trans_sub.
DR   Pfam; PF00723; Glyco_hydro_15; 1.
KW   Hydrolase.
SQ   SEQUENCE   607 AA;  69495 MW;  8AC6297BA16ED500 CRC64;
     MGTYRGLYDL HDAYRSDYLK IANHGFIANN RTAALVGIDG TIDWACLPNF NSNPVFDSIL
     DARNGGYFKT SPVMESNVNQ YYEESTNILI TEFVNNNQVI LRLTDFLPTS SYSTITFPEI
     HRLIEAPYSD VEVSIDIKSH FNFGSGKTNI TRDRNGYIFS CTDDTLGIST NLKLKKGNGN
     VYSRIKVEKG SHEWIVVLSG VRQIGNVRQY ESYTRLEETR NYWSAWAGKI NYSGLYYDHV
     IRSALTLRGL FYDPTGMMVA APTTSLPEII GGERNWDYRY TWIRDTAYVV EALSLIGLND
     VATKFLYDIM SIVQKDKKVK TIYPVNGDSK LEEKKVNLSG YMDSIPVRIG NEASEQLQID
     QYGSIVNAVF RFHEAGGLVT TYLWDFLIEI LDTLKDIWKL PDSSIWEFRS EPKHYLYSKL
     ISWSAFNRAI KMGRELGYSA PYRTWHKIRE EIKNEIMEKG YNPDVKAFTQ YYGSDQMDAS
     VLRMPLTGII SAKDPRFVST LARVEAELKN PCGMFIRYHS DDGLKGHDNA FLLLSFWYVE
     DLILSGRIME AKETFENILD HSNHLMLFSE EINFNDCREM LGNFPQAITH LGVIRAAIKL
     DEALRGK
//
ID   Q41US7_FERAC   PRELIMINARY;   PRT;   270 AA.
AC   Q41US7;
DT   27-SEP-2005, integrated into UniProtKB/TrEMBL.
DT   27-SEP-2005, sequence version 1.
DT   30-MAY-2006, entry version 4.
DE   Potassium channel protein.
GN   ORFNames=FaciDRAFT_1443;
OS   Ferroplasma acidarmanus Fer1.
OC   Archaea; Euryarchaeota; Thermoplasmata; Thermoplasmatales;
OC   Ferroplasmaceae; Ferroplasma.
OX   NCBI_TaxID=333146;
RN   [1]
RP   NUCLEOTIDE SEQUENCE.
RC   STRAIN=Fer1;
RG   US DOE Joint Genome Institute (JGI-PGF);
RA   Copeland A., Lucas S., Lapidus A., Barry K., Detter C., Glavina T.,
RA   Hammon N., Israni S., Pitluck S., Richardson P.;
RT   "Sequencing of the draft genome and assembly of Ferroplasma
RT   acidarmanus fer1.";
RL   Submitted (JUN-2005) to the EMBL/GenBank/DDBJ databases.
RN   [2]
RP   NUCLEOTIDE SEQUENCE.
RC   STRAIN=Fer1;
RG   US DOE Joint Genome Institute (JGI-ORNL);
RA   Larimer F., Land M.;
RT   "Annotation of the draft genome assembly of Ferroplasma acidarmanus
RT   fer1.";
RL   Submitted (JUN-2005) to the EMBL/GenBank/DDBJ databases.
RN   [3]
RP   NUCLEOTIDE SEQUENCE.
RC   STRAIN=Fer1;
RG   US DOE Joint Genome Institute (JGI-PGF);
RA   Copeland A., Lucas S., Lapidus A., Barry K., Detter C., Glavina T.,
RA   Hammon N., Israni S., Pitluck S., Richardson P.;
RL   Submitted (JUN-2005) to the EMBL/GenBank/DDBJ databases.
CC   -!- CAUTION: The sequence shown here is derived from an
CC       EMBL/GenBank/DDBJ whole genome shotgun (WGS) entry which is
CC       preliminary data.
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DR   EMBL; AABC04000002; EAM94333.1; -; Genomic_DNA.
DR   GO; GO:0016020; C:membrane; IEA.
DR   GO; GO:0005216; F:ion channel activity; IEA.
DR   GO; GO:0005267; F:potassium channel activity; IEA.
DR   GO; GO:0006813; P:potassium ion transport; IEA.
DR   InterPro; IPR013099; Ion_trans_2_bac.
DR   InterPro; IPR001622; K+channel_pore.
DR   InterPro; IPR003148; TrkA_N.
DR   Pfam; PF07885; Ion_trans_2; 1.
DR   Pfam; PF02254; TrkA_N; 1.
KW   Ionic channel.
SQ   SEQUENCE   270 AA;  30497 MW;  528C4EA75C41DF75 CRC64;
     MQTITTVGYG DTPVYGLAGR ANGMLIMVIG IGSLGYLMAG LTSMLIDIRL SSKLGERMAA
     EKKHIVLCNY NESTKKVLDK IKYDGIDIVI LNENEVKGDN EYTYIKGSFL RENDLIRAGI
     KKASSVIIFS RSEDKEQMAM DAESILSAMI IRKLNPEIRI IGEILNPDSR EHASSFMDDI
     IIKGDVSSML IYSSIMIPGI PEFINDLLMS NSISEEDIDK KYASNTYREF ISNMEKENRI
     VLAFRKQDKI YLRENSDKKI DVDSYIFIKN
//

