<nex:nexml generator="Bio::Phylo::Project v.0.17_RC9_841" version="0.8" xmlns="http://www.nexml.org/1.0" xmlns:nex="http://www.nexml.org/1.0" xmlns:rdf="http://www.w3.org/1999/02/22-rdf-syntax-ns" xmlns:xml="http://www.w3.org/XML/1998/namespace" xmlns:xsi="http://www.w3.org/2001/XMLSchema-instance" xsi:schemaLocation="http://www.nexml.org/1.0 http://www.nexml.org/1.0/nexml.xsd">
  <otus id="otus1">
    <otu id="otu2" label="S. acanthias"/> <!-- Squalus acanthias, spiny dogfish, NCBI 7797 -->
    <otu id="otu3" label="S. glaucus"> <!-- Squalus glaucus -->
      <dict xmlns:cdao="http://evolutionaryontology.org/cdao/1.0/cdao.owl" id="dict1">
        <any id="bar" xmlns="">
          <cdao:TU rdf:id="baz">
            <cdao:has_Taxonomy_Reference rdf:resource="http://www.zoobank.org/?lsid=urn:lsid:zoobank.org:act:A6AD1B85-C65C-4079-B425-56828418620C"/>
          </cdao:TU>
        </any>
      </dict>
    </otu>  
    <otu id="otu4" label="S. cubensis"/> <!-- Cuban dogfish, NCBI 134995 -->
    <otu id="otu5" label="S. megalops"/>  <!-- dogfish, NCBI 335062 -->
    <otu id="otu6" label="S. grahami"/>  <!-- dogfish, NCBI 335029 -->
    <otu id="otu7" label="S. brevirostris"/>  <!--  dogfish, NCBI 436290 -->
  </otus>
  <trees id="trees16" otus="otus1">
    <tree id="tree18" label="'the tree'" xsi:type="nex:IntTree">
      <node id="node19" root="true"/>
      <node id="node20" label="S. acanthias" otu="otu2"/>
      <node id="node21"/>
      <node id="node22"/>
      <node id="node27"/>
      <node id="node23"/>
      <node id="node26" label="S. megalops" otu="otu5"/>
      <node id="node28" label="S. grahami" otu="otu6"/>
      <node id="node29" label="S. brevirostris" otu="otu7"/>
      <node id="node24" label="S. glaucus" otu="otu3"/>
      <node id="node25" label="S. cubensis" otu="otu4"/>
      <edge id="edge20" length="4" source="node19" target="node20"/>
      <edge id="edge21" length="1" source="node19" target="node21"/>
      <edge id="edge22" length="1" source="node21" target="node22"/>
      <edge id="edge27" length="2" source="node21" target="node27"/>
      <edge id="edge23" length="1" source="node22" target="node23"/>
      <edge id="edge26" length="2" source="node22" target="node26"/>
      <edge id="edge28" length="1" source="node27" target="node28"/>
      <edge id="edge29" length="1" source="node27" target="node29"/>
      <edge id="edge24" length="1" source="node23" target="node24"/>
      <edge id="edge25" length="1" source="node23" target="node25"/>
    </tree>
  </trees>
  <characters id="characters8" otus="otus1" xsi:type="nex:StandardCells">
    <format>
      <states id="states10">
        <state id="s1" symbol="0"/>
        <state id="s2" symbol="1"/>
        <state id="s3" symbol="2"/>
        <state id="s4" symbol="3"/>
        <state id="s5" symbol="4"/>
        <state id="s6" symbol="5"/>
        <state id="s7" symbol="6"/>
        <state id="s8" symbol="7"/>
        <state id="s9" symbol="8"/>
        <state id="s10" symbol="9"/>
        <uncertain_state_set id="s11" symbol="-"></uncertain_state_set>
        <uncertain_state_set id="s12" symbol="?">
          <member state="s1"/>
          <member state="s2"/>
          <member state="s3"/>
          <member state="s4"/>
          <member state="s5"/>
          <member state="s6"/>
          <member state="s7"/>
          <member state="s8"/>
          <member state="s9"/>
          <member state="s10"/>
          <member state="s11"/>
        </uncertain_state_set>
      </states>
      <char id="c1" states="states10"/>
    </format>
    <matrix>
      <row id="row9" label="S. acanthias" otu="otu2">
        <cell char="c1" state="s1"/>
      </row>
      <row id="row11" label="S. glaucus" otu="otu3">
        <cell char="c1" state="s3"/>
      </row>
      <row id="row12" label="S. cubensis" otu="otu4">
        <cell char="c1" state="s3"/>
      </row>
      <row id="row13" label="S. megalops" otu="otu5">
        <cell char="c1" state="s1"/>
      </row>
      <row id="row14" label="S. grahami" otu="otu6">
        <cell char="c1" state="s2"/>
      </row>
      <row id="row15" label="S. brevirostris" otu="otu7">
        <cell char="c1" state="s1"/>
      </row>
    </matrix>
  </characters>
</nex:nexml>
