hmmpfam - search one or more sequences against HMM database
HMMER 2.3.2 (Oct 2003)
Copyright (C) 1992-2003 HHMI/Washington University School of Medicine
Freely distributed under the GNU General Public License (GPL)
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -
HMM file:                 testInput.hmm
Sequence file:            testInput.fasta
- - - - - - - - - - - - - - - - - - - - - - - - - - - - - - - -

Query sequence: Test
Accession:      [none]
Description:    [none]

Scores for sequence family classification (score includes all domains):
Model    Description                                    Score    E-value  N 
-------- -----------                                    -----    ------- ---
TEST                                                    184.7    2.5e-56   1

Parsed for domains:
Model    Domain  seq-f seq-t    hmm-f hmm-t      score  E-value
-------- ------- ----- -----    ----- -----      -----  -------
TEST       1/1       8    97 .]     1    95 []   184.7  2.5e-56

Alignments of top-scoring domains:
TEST: domain 1 of 1, from 8 to 97: score 184.7, E = 2.5e-56
                   *->svfqqqqssksttgstvtAiAiAigYRYRYRAvtWnsGsLssGvnDn
                      sv+qqqq+  +    +vtAiAiAigYRYRYRAv Wn GsLs G nDn
        Test     8    SVYQQQQGGSA----MVTAIAIAIGYRYRYRAVVWNKGSLSTGTNDN 50   

                   DnDqqsdgLYtiYYsvtvpssslpsqtviHHHaHkasstkiiikiePr<-
                   DnDq +d LYtiYYsvtv +ss+p q+v+HHHaH+asstkiiiki P   
        Test    51 DNDQAAD-LYTIYYSVTVSASSWPGQSVTHHHAHPASSTKIIIKIAPS   97   

                   *
                    
        Test     -   -    

//
