BLASTN 2.0MP-WashU [04-May-2006] [macosx-10.2-g4-ILP32F64 2006-05-07T21:56:24]

Copyright (C) 1996-2006 Washington University, Saint Louis, Missouri USA.
All Rights Reserved.

Reference:  Gish, W. (1996-2006) http://blast.wustl.edu

Notice:  this program and its default parameter settings are optimized to find
nearly identical sequences rapidly.  To identify weak protein similarities
encoded in nucleic acid, use BLASTX, TBLASTN or TBLASTX.

Query=  ref|NM_003201.1| Homo sapiens transcription factor A, mitochondrial
    (TFAM), mRNA
        (1936 letters)
>Unfiltered+1
CCTCGCTAGTGGCGGGCATGATAACACACGCCGGAGGGTCGCACGCGGGTTCCAGTTGTG
ATTGCTGGAGTTGTGTATTGCCAGGAGGCTCTCCGAGATTGGGGTCGGGTCACTGCCTCA
TCCACCGGAGCGATGGCGTTTCTCCGAAGCATGTGGGGCGTGCTGAGTGCCCTGGGAAGG
TCTGGAGCAGAGCTGTGCACCGGCTGTGGAAGTCGACTGCGCTCCCCCTTCAGTTTTGTG
TATTTACCGAGGTGGTTTTCATCTGTCTTGGCAAGTTGTCCAAAGAAACCTGTAAGTTCT
TACCTTCGATTTTCTAAAGAACAACTACCCATATTTAAAGCTCAGAACCCAGATGCAAAA
ACTACAGAACTAATTAGAAGAATTGCCCAGCGTTGGAGGGAACTTCCTGATTCAAAGAAA
AAAATATATCAAGATGCTTATAGGGCGGAGTGGCAGGTATATAAAGAAGAGATAAGCAGA
TTTAAAGAACAGCTAACTCCAAGTCAGATTATGTCTTTGGAAAAAGAAATCATGGACAAA
CATTTAAAAAGGAAAGCTATGACAAAAAAAAAAGAGTTAACACTGCTTGGAAAACCAAAA
AGACCTCGTTCAGCTTATAACGTTTATGTAGCTGAAAGATTCCAAGAAGCTAAGGGTGAT
TCACCGCAGGAAAAGCTGAAGACTGTAAAGGAAAACTGGAAAAATCTGTCTGACTCTGAA
AAGGAATTATATATTCAGCATGCTAAAGAGGACGAAACTCGTTATCATAATGAAATGAAG
TCTTGGGAAGAACAAATGATTGAAGTTGGACGAAAGGATCTTCTACGTCGCACAATAAAG
AAACAACGAAAATATGGTGCTGAGGAGTGTTAAAAGTAGAAGATTGAGATGTGTTCACAA
TGGATAGGCACAGGAAACCAGTTAGGTCTCAATACCTGAAGCTATCGTAAAATTAAGAAA
GGATAAAGTTGGTAAACCTTTTATATTTAGTATCTTTTTATTCAGCTCATGGACTTCTGC
CAGCATAATACTTGCTTTGGAAAACCCAGATAAAGGTTCATGCAAACTTTATTTTGTGTT
TAGGAACTACTGAGGATCAGAGTAATCCAAGCAAATGTGAATCATTTTACCTTTGACAAA
GGTAAATCAGACTATGAAGTTTTTTTTATACAGGATGATGACTATGGAAAGAGTACTCTT
GTTTCCTTATATTATGGAGGCAGGAGTTTCGTTTTCAAAATTGTTACAAATTGTAGAAGC
CACGGTGTTCTGTGATATAAGTGTGTGTTTTTCATAAAGCAGGCAGAACTCATCTAGGTA
AATTACAGTTCCTAGGTATAATTCACATTGTATTCAGAGTTGATGGTTGTACATATAAGT
GATTGCTGGTTTTAGTTGCAACTTTGTATAAAAGGGACTGAGAAATTTATAAACTTTTTT
CTTACTGTCTTTTTTCTAAAGTAAAAACAAAGAAATTATGTGCCAGATTTATGCATATTA
TTTTATGTTGCATAGAATAAAATTTTTAATCTTTAATTTTACATTTCCTAAATATATTTT
AAGACGAAACATTTGTTCTATAGCTTTTCCCTTTTTTTAAGTAAGGAATTTTATTTTTTT
CTGAATTATTTTCTCTCGTGAGTATATTGATCCAGAAAGAAAACTTGTATTATGTGTGTT
TTAAAATGAGAAATCTAAAAAACGAAAAGTCTCCAAAGTCTCTGGAATTTGAAACACTTT
GCATAACGTATAAAAGCCTGTTTAAGAGACAGCCAACTATGGCCTGTGGATCAAATCCAG
CCTGCTGCCTGCTTTTTATGGCCTGTGAGCTAGGAATTGTGTTTATAATTTTAAATGTTT
TTTTTTAAAGACTTTTATGATACTTGAAAATTAACATGAATATTTAGTGTTCATAAATAA
AGTTTGTTGAAACACA
>Unfiltered-1
TGTGTTTCAACAAACTTTATTTATGAACACTAAATATTCATGTTAATTTTCAAGTATCAT
AAAAGTCTTTAAAAAAAAACATTTAAAATTATAAACACAATTCCTAGCTCACAGGCCATA
AAAAGCAGGCAGCAGGCTGGATTTGATCCACAGGCCATAGTTGGCTGTCTCTTAAACAGG
CTTTTATACGTTATGCAAAGTGTTTCAAATTCCAGAGACTTTGGAGACTTTTCGTTTTTT
AGATTTCTCATTTTAAAACACACATAATACAAGTTTTCTTTCTGGATCAATATACTCACG
AGAGAAAATAATTCAGAAAAAAATAAAATTCCTTACTTAAAAAAAGGGAAAAGCTATAGA
ACAAATGTTTCGTCTTAAAATATATTTAGGAAATGTAAAATTAAAGATTAAAAATTTTAT
TCTATGCAACATAAAATAATATGCATAAATCTGGCACATAATTTCTTTGTTTTTACTTTA
GAAAAAAGACAGTAAGAAAAAAGTTTATAAATTTCTCAGTCCCTTTTATACAAAGTTGCA
ACTAAAACCAGCAATCACTTATATGTACAACCATCAACTCTGAATACAATGTGAATTATA
CCTAGGAACTGTAATTTACCTAGATGAGTTCTGCCTGCTTTATGAAAAACACACACTTAT
ATCACAGAACACCGTGGCTTCTACAATTTGTAACAATTTTGAAAACGAAACTCCTGCCTC
CATAATATAAGGAAACAAGAGTACTCTTTCCATAGTCATCATCCTGTATAAAAAAAACTT
CATAGTCTGATTTACCTTTGTCAAAGGTAAAATGATTCACATTTGCTTGGATTACTCTGA
TCCTCAGTAGTTCCTAAACACAAAATAAAGTTTGCATGAACCTTTATCTGGGTTTTCCAA
AGCAAGTATTATGCTGGCAGAAGTCCATGAGCTGAATAAAAAGATACTAAATATAAAAGG
TTTACCAACTTTATCCTTTCTTAATTTTACGATAGCTTCAGGTATTGAGACCTAACTGGT
TTCCTGTGCCTATCCATTGTGAACACATCTCAATCTTCTACTTTTAACACTCCTCAGCAC
CATATTTTCGTTGTTTCTTTATTGTGCGACGTAGAAGATCCTTTCGTCCAACTTCAATCA
TTTGTTCTTCCCAAGACTTCATTTCATTATGATAACGAGTTTCGTCCTCTTTAGCATGCT
GAATATATAATTCCTTTTCAGAGTCAGACAGATTTTTCCAGTTTTCCTTTACAGTCTTCA
GCTTTTCCTGCGGTGAATCACCCTTAGCTTCTTGGAATCTTTCAGCTACATAAACGTTAT
AAGCTGAACGAGGTCTTTTTGGTTTTCCAAGCAGTGTTAACTCTTTTTTTTTTGTCATAG
CTTTCCTTTTTAAATGTTTGTCCATGATTTCTTTTTCCAAAGACATAATCTGACTTGGAG
TTAGCTGTTCTTTAAATCTGCTTATCTCTTCTTTATATACCTGCCACTCCGCCCTATAAG
CATCTTGATATATTTTTTTCTTTGAATCAGGAAGTTCCCTCCAACGCTGGGCAATTCTTC
TAATTAGTTCTGTAGTTTTTGCATCTGGGTTCTGAGCTTTAAATATGGGTAGTTGTTCTT
TAGAAAATCGAAGGTAAGAACTTACAGGTTTCTTTGGACAACTTGCCAAGACAGATGAAA
ACCACCTCGGTAAATACACAAAACTGAAGGGGGAGCGCAGTCGACTTCCACAGCCGGTGC
ACAGCTCTGCTCCAGACCTTCCCAGGGCACTCAGCACGCCCCACATGCTTCGGAGAAACG
CCATCGCTCCGGTGGATGAGGCAGTGACCCGACCCCAATCTCGGAGAGCCTCCTGGCAAT
ACACAACTCCAGCAATCACAACTGGAACCCGCGTGCGACCCTCCGGCGTGTGTTATCATG
CCCGCCACTAGCGAGG

Database:  NM_003201.fa
           1 sequences; 1936 total letters.
Searching done

                                                                     Smallest
                                                                       Sum
                                                              High  Probability
Sequences producing High-scoring Segment Pairs:              Score  P(N)      N

ref|NM_003201.1| Homo sapiens transcription factor A, mit...  9680  0.        1


>ref|NM_003201.1| Homo sapiens transcription factor A, mitochondrial (TFAM),
            mRNA
        Length = 1936

  Plus Strand HSPs:

 Score = 9680 (1458.4 bits), Expect = 0., P = 0.
 Identities = 1936/1936 (100%), Positives = 1936/1936 (100%), Strand = Plus / Plus

Query:     1 CCTCGCTAGTGGCGGGCATGATAACACACGCCGGAGGGTCGCACGCGGGTTCCAGTTGTG 60
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:     1 CCTCGCTAGTGGCGGGCATGATAACACACGCCGGAGGGTCGCACGCGGGTTCCAGTTGTG 60

Query:    61 ATTGCTGGAGTTGTGTATTGCCAGGAGGCTCTCCGAGATTGGGGTCGGGTCACTGCCTCA 120
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:    61 ATTGCTGGAGTTGTGTATTGCCAGGAGGCTCTCCGAGATTGGGGTCGGGTCACTGCCTCA 120

Query:   121 TCCACCGGAGCGATGGCGTTTCTCCGAAGCATGTGGGGCGTGCTGAGTGCCCTGGGAAGG 180
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:   121 TCCACCGGAGCGATGGCGTTTCTCCGAAGCATGTGGGGCGTGCTGAGTGCCCTGGGAAGG 180

Query:   181 TCTGGAGCAGAGCTGTGCACCGGCTGTGGAAGTCGACTGCGCTCCCCCTTCAGTTTTGTG 240
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:   181 TCTGGAGCAGAGCTGTGCACCGGCTGTGGAAGTCGACTGCGCTCCCCCTTCAGTTTTGTG 240

Query:   241 TATTTACCGAGGTGGTTTTCATCTGTCTTGGCAAGTTGTCCAAAGAAACCTGTAAGTTCT 300
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:   241 TATTTACCGAGGTGGTTTTCATCTGTCTTGGCAAGTTGTCCAAAGAAACCTGTAAGTTCT 300

Query:   301 TACCTTCGATTTTCTAAAGAACAACTACCCATATTTAAAGCTCAGAACCCAGATGCAAAA 360
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:   301 TACCTTCGATTTTCTAAAGAACAACTACCCATATTTAAAGCTCAGAACCCAGATGCAAAA 360

Query:   361 ACTACAGAACTAATTAGAAGAATTGCCCAGCGTTGGAGGGAACTTCCTGATTCAAAGAAA 420
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:   361 ACTACAGAACTAATTAGAAGAATTGCCCAGCGTTGGAGGGAACTTCCTGATTCAAAGAAA 420

Query:   421 AAAATATATCAAGATGCTTATAGGGCGGAGTGGCAGGTATATAAAGAAGAGATAAGCAGA 480
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:   421 AAAATATATCAAGATGCTTATAGGGCGGAGTGGCAGGTATATAAAGAAGAGATAAGCAGA 480

Query:   481 TTTAAAGAACAGCTAACTCCAAGTCAGATTATGTCTTTGGAAAAAGAAATCATGGACAAA 540
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:   481 TTTAAAGAACAGCTAACTCCAAGTCAGATTATGTCTTTGGAAAAAGAAATCATGGACAAA 540

Query:   541 CATTTAAAAAGGAAAGCTATGACAAAAAAAAAAGAGTTAACACTGCTTGGAAAACCAAAA 600
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:   541 CATTTAAAAAGGAAAGCTATGACAAAAAAAAAAGAGTTAACACTGCTTGGAAAACCAAAA 600

Query:   601 AGACCTCGTTCAGCTTATAACGTTTATGTAGCTGAAAGATTCCAAGAAGCTAAGGGTGAT 660
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:   601 AGACCTCGTTCAGCTTATAACGTTTATGTAGCTGAAAGATTCCAAGAAGCTAAGGGTGAT 660

Query:   661 TCACCGCAGGAAAAGCTGAAGACTGTAAAGGAAAACTGGAAAAATCTGTCTGACTCTGAA 720
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:   661 TCACCGCAGGAAAAGCTGAAGACTGTAAAGGAAAACTGGAAAAATCTGTCTGACTCTGAA 720

Query:   721 AAGGAATTATATATTCAGCATGCTAAAGAGGACGAAACTCGTTATCATAATGAAATGAAG 780
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:   721 AAGGAATTATATATTCAGCATGCTAAAGAGGACGAAACTCGTTATCATAATGAAATGAAG 780

Query:   781 TCTTGGGAAGAACAAATGATTGAAGTTGGACGAAAGGATCTTCTACGTCGCACAATAAAG 840
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:   781 TCTTGGGAAGAACAAATGATTGAAGTTGGACGAAAGGATCTTCTACGTCGCACAATAAAG 840

Query:   841 AAACAACGAAAATATGGTGCTGAGGAGTGTTAAAAGTAGAAGATTGAGATGTGTTCACAA 900
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:   841 AAACAACGAAAATATGGTGCTGAGGAGTGTTAAAAGTAGAAGATTGAGATGTGTTCACAA 900

Query:   901 TGGATAGGCACAGGAAACCAGTTAGGTCTCAATACCTGAAGCTATCGTAAAATTAAGAAA 960
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:   901 TGGATAGGCACAGGAAACCAGTTAGGTCTCAATACCTGAAGCTATCGTAAAATTAAGAAA 960

Query:   961 GGATAAAGTTGGTAAACCTTTTATATTTAGTATCTTTTTATTCAGCTCATGGACTTCTGC 1020
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:   961 GGATAAAGTTGGTAAACCTTTTATATTTAGTATCTTTTTATTCAGCTCATGGACTTCTGC 1020

Query:  1021 CAGCATAATACTTGCTTTGGAAAACCCAGATAAAGGTTCATGCAAACTTTATTTTGTGTT 1080
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:  1021 CAGCATAATACTTGCTTTGGAAAACCCAGATAAAGGTTCATGCAAACTTTATTTTGTGTT 1080

Query:  1081 TAGGAACTACTGAGGATCAGAGTAATCCAAGCAAATGTGAATCATTTTACCTTTGACAAA 1140
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:  1081 TAGGAACTACTGAGGATCAGAGTAATCCAAGCAAATGTGAATCATTTTACCTTTGACAAA 1140

Query:  1141 GGTAAATCAGACTATGAAGTTTTTTTTATACAGGATGATGACTATGGAAAGAGTACTCTT 1200
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:  1141 GGTAAATCAGACTATGAAGTTTTTTTTATACAGGATGATGACTATGGAAAGAGTACTCTT 1200

Query:  1201 GTTTCCTTATATTATGGAGGCAGGAGTTTCGTTTTCAAAATTGTTACAAATTGTAGAAGC 1260
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:  1201 GTTTCCTTATATTATGGAGGCAGGAGTTTCGTTTTCAAAATTGTTACAAATTGTAGAAGC 1260

Query:  1261 CACGGTGTTCTGTGATATAAGTGTGTGTTTTTCATAAAGCAGGCAGAACTCATCTAGGTA 1320
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:  1261 CACGGTGTTCTGTGATATAAGTGTGTGTTTTTCATAAAGCAGGCAGAACTCATCTAGGTA 1320

Query:  1321 AATTACAGTTCCTAGGTATAATTCACATTGTATTCAGAGTTGATGGTTGTACATATAAGT 1380
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:  1321 AATTACAGTTCCTAGGTATAATTCACATTGTATTCAGAGTTGATGGTTGTACATATAAGT 1380

Query:  1381 GATTGCTGGTTTTAGTTGCAACTTTGTATAAAAGGGACTGAGAAATTTATAAACTTTTTT 1440
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:  1381 GATTGCTGGTTTTAGTTGCAACTTTGTATAAAAGGGACTGAGAAATTTATAAACTTTTTT 1440

Query:  1441 CTTACTGTCTTTTTTCTAAAGTAAAAACAAAGAAATTATGTGCCAGATTTATGCATATTA 1500
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:  1441 CTTACTGTCTTTTTTCTAAAGTAAAAACAAAGAAATTATGTGCCAGATTTATGCATATTA 1500

Query:  1501 TTTTATGTTGCATAGAATAAAATTTTTAATCTTTAATTTTACATTTCCTAAATATATTTT 1560
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:  1501 TTTTATGTTGCATAGAATAAAATTTTTAATCTTTAATTTTACATTTCCTAAATATATTTT 1560

Query:  1561 AAGACGAAACATTTGTTCTATAGCTTTTCCCTTTTTTTAAGTAAGGAATTTTATTTTTTT 1620
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:  1561 AAGACGAAACATTTGTTCTATAGCTTTTCCCTTTTTTTAAGTAAGGAATTTTATTTTTTT 1620

Query:  1621 CTGAATTATTTTCTCTCGTGAGTATATTGATCCAGAAAGAAAACTTGTATTATGTGTGTT 1680
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:  1621 CTGAATTATTTTCTCTCGTGAGTATATTGATCCAGAAAGAAAACTTGTATTATGTGTGTT 1680

Query:  1681 TTAAAATGAGAAATCTAAAAAACGAAAAGTCTCCAAAGTCTCTGGAATTTGAAACACTTT 1740
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:  1681 TTAAAATGAGAAATCTAAAAAACGAAAAGTCTCCAAAGTCTCTGGAATTTGAAACACTTT 1740

Query:  1741 GCATAACGTATAAAAGCCTGTTTAAGAGACAGCCAACTATGGCCTGTGGATCAAATCCAG 1800
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:  1741 GCATAACGTATAAAAGCCTGTTTAAGAGACAGCCAACTATGGCCTGTGGATCAAATCCAG 1800

Query:  1801 CCTGCTGCCTGCTTTTTATGGCCTGTGAGCTAGGAATTGTGTTTATAATTTTAAATGTTT 1860
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:  1801 CCTGCTGCCTGCTTTTTATGGCCTGTGAGCTAGGAATTGTGTTTATAATTTTAAATGTTT 1860

Query:  1861 TTTTTTAAAGACTTTTATGATACTTGAAAATTAACATGAATATTTAGTGTTCATAAATAA 1920
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct:  1861 TTTTTTAAAGACTTTTATGATACTTGAAAATTAACATGAATATTTAGTGTTCATAAATAA 1920

Query:  1921 AGTTTGTTGAAACACA 1936
             ||||||||||||||||
Sbjct:  1921 AGTTTGTTGAAACACA 1936


Parameters:
  echofilter

  ctxfactor=2.00
  E=10

  Query                        -----  As Used  -----    -----  Computed  ----
  Strand MatID Matrix name     Lambda    K       H      Lambda    K       H
   +1      0   +5,-4           0.192   0.182   0.357    same    same    same
               Q=10,R=10       0.104   0.0151  0.0600    n/a     n/a     n/a
   -1      0   +5,-4           0.192   0.182   0.357    same    same    same
               Q=10,R=10       0.104   0.0151  0.0600    n/a     n/a     n/a

  Query
  Strand MatID  Length  Eff.Length     E    S  W   T   X   E2     S2
   +1      0     1936      1936       9.2  89 11 n/a  73  0.042   83
                                                     134  2.1     89
   -1      0     1936      1936       9.2  89 11 n/a  73  0.042   83
                                                     134  2.1     89


Statistics:

  Database:  NM_003201.fa
   Title:  NM_003201.fa
   Posted:  7:39:50 PM CET Nov 2, 2007
   Created:  7:39:50 PM CET Nov 2, 2007
   Format:  XDF-1
   # of letters in database:  1936
   # of sequences in database:  1
   # of database sequences satisfying E:  1
  No. of states in DFA:  257 (257 KB)
  Total size of DFA:  344 KB (2092 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  1
  Search cpu time:  0.00u 0.01s 0.01t   Elapsed:  00:00:00
  Total cpu time:  0.00u 0.01s 0.01t   Elapsed:  00:00:00
  Start:  Fri Nov  2 19:42:26 2007   End:  Fri Nov  2 19:42:26 2007
