BLASTN 2.2.1 [Apr-13-2001]

Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.
RID: 1012577175-3730-28291
Query= 
         (60 letters)

Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,
or phase 0, 1 or 2 HTGS sequences) 
           1,083,200 sequences; 4,677,375,331 total letters




                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gb|AY052359.1| Arabidopsis thaliana At2g17400 mRNA, complete cds       96   3e-18
gb|AC002329.2|AC002329 Arabidopsis thaliana chromosome II sectio...    96   3e-18
gb|AF132318.1|AF132318 Buchnera aphidicola phosphoribosyl anthra...    42   0.040
gb|AC024791.1| Caenorhabditis elegans cosmid Y47G6A, complete se...    36   2.5  
gb|AC017078.8| Homo sapiens BAC clone RP11-457N9 from 2, complet...    36   2.5  
gb|AC005046.3|AC005046 Homo sapiens BAC clone CTB-13F3 from 7q22...    36   2.5  
gb|AC006017.2|AC006017 Homo sapiens PAC clone RP5-981O7 from 7q3...    36   2.5  
dbj|AP001519.1|AP001519 Bacillus halodurans genomic DNA, section...    36   2.5  
gb|AC095064.3| Homo sapiens chromosome 4 clone RP11-620C21, comp...    34   9.7  
gb|AC003029.3| Homo sapiens Chromosome 12q24 PAC RP3-462E2 (Rosw...    34   9.7  
gb|AC079248.5| Homo sapiens BAC clone RP11-24J11 from 2, complet...    34   9.7  
gb|AC093865.2| Homo sapiens chromosome 2 clone RP11-560C24, comp...    34   9.7  
gb|AC010202.6|AC010202 Homo sapiens 12q BAC RP11-210L7 (Roswell ...    34   9.7  
gb|AC017118.3|AC017118 Genomic sequence for Arabidopsis thaliana...    34   9.7  
emb|AL355520.8|AL355520 Human DNA sequence from clone RP4-595C2 ...    34   9.7  
emb|AL137879.15|AL137879 Human DNA sequence from clone RP11-153O...    34   9.7  
gb|AC006395.1|AC006395 Homo sapiens PAC clone RP3-394H4 from Xq2...    34   9.7  
gb|AE000650.1|AE000650 Helicobacter pylori 26695 section 128 of ...    34   9.7  
gb|AC006924.3|AC006924 Homo sapiens, clone hRPK.32_A_1, complete...    34   9.7  
gb|AC006266.1|AC006266 Arabidopsis thaliana BAC F1K3 from chromo...    34   9.7  
gb|U32797.1|U32797 Haemophilus influenzae Rd section 112 of 163 ...    34   9.7  
emb|AJ286341.1|HIM286341 Human immunodeficiency virus type 1 pro...    34   9.7  
emb|AL161561.2|ATCHRIV61 Arabidopsis thaliana DNA chromosome 4, ...    34   9.7  
emb|AL161508.2|ATCHRIV20 Arabidopsis thaliana DNA chromosome 4, ...    34   9.7  
emb|AL035356.1|ATF22K18 Arabidopsis thaliana DNA chromosome 4, B...    34   9.7  
emb|AJ132676.1|MMU132676 Mus musculus IgVk gh33r pseudogene            34   9.7  
emb|AJ132673.1|MMU132673 Mus musculus IgVk gd33r pseudogene            34   9.7  
emb|AJ132672.1|MMU132672 Mus musculus IgVk gc33r pseudogene            34   9.7  
emb|Z74955.1|SCYOR047C S.cerevisiae chromosome XV reading frame ...    34   9.7  
emb|Z74954.1|SCYOR046C S.cerevisiae chromosome XV reading frame ...    34   9.7  
gb|U28135.1|SCU28135 Saccharomyces cerevisiae DEAD-Box Protein 5...    34   9.7  

ALIGNMENTS
>gb|AY052359.1| Arabidopsis thaliana At2g17400 mRNA, complete cds
          Length = 2826

 Score = 95.6 bits (48), Expect = 3e-18
 Identities = 58/60 (96%), Gaps = 1/60 (1%)
 Strand = Plus / Plus

                                                                       
Query: 1   aggaatgctgtttaattggaatcgtacaatggagaatttgacggaaatagaatcaacgat 60
           |||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||
Sbjct: 154 aggaatgctgtttaattggaatca-acaatggagaatttgacggaaatagaatcaacgat 212


>gb|AC002329.2|AC002329 Arabidopsis thaliana chromosome II section 100 of 255 of the complete
             sequence. Sequence from clones T23A1, F5J6, MJB20
          Length = 76170

 Score = 95.6 bits (48), Expect = 3e-18
 Identities = 58/60 (96%), Gaps = 1/60 (1%)
 Strand = Plus / Plus

                                                                         
Query: 1     aggaatgctgtttaattggaatcgtacaatggagaatttgacggaaatagaatcaacgat 60
             |||||||||||||||||||||||  |||||||||||||||||||||||||||||||||||
Sbjct: 60659 aggaatgctgtttaattggaatca-acaatggagaatttgacggaaatagaatcaacgat 60717


>gb|AF132318.1|AF132318 Buchnera aphidicola phosphoribosyl anthranilate transferase (trpD),
           phosphoribosyl anthranilate isomerase/indoleglycerol
           phosphate synthetase fusion (trpC/F), beta subunit of
           tryptophan synthetase (trpB), and alpha subunit of
           tryptophan synthetase (trp>
          Length = 5383

 Score = 42.1 bits (21), Expect = 0.040
 Identities = 21/21 (100%)
 Strand = Plus / Plus

                                
Query: 35  aatttgacggaaatagaatca 55
           |||||||||||||||||||||
Sbjct: 536 aatttgacggaaatagaatca 556


>gb|AC024791.1| Caenorhabditis elegans cosmid Y47G6A, complete sequence
          Length = 194322

 Score = 36.2 bits (18), Expect = 2.5
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 34     gaatttgacggaaataga 51
              ||||||||||||||||||
Sbjct: 193876 gaatttgacggaaataga 193859


>gb|AC017078.8| Homo sapiens BAC clone RP11-457N9 from 2, complete sequence
          Length = 193979

 Score = 36.2 bits (18), Expect = 2.5
 Identities = 24/26 (92%)
 Strand = Plus / Plus

                                        
Query: 3      gaatgctgtttaattggaatcgtaca 28
              ||||| ||||||| ||||||||||||
Sbjct: 142900 gaatgttgtttaaatggaatcgtaca 142925


>gb|AC005046.3|AC005046 Homo sapiens BAC clone CTB-13F3 from 7q22, complete sequence
          Length = 219436

 Score = 36.2 bits (18), Expect = 2.5
 Identities = 18/18 (100%)
 Strand = Plus / Plus

                               
Query: 13    taattggaatcgtacaat 30
             ||||||||||||||||||
Sbjct: 46649 taattggaatcgtacaat 46666


>gb|AC006017.2|AC006017 Homo sapiens PAC clone RP5-981O7 from 7q34-q36, complete sequence
          Length = 162556

 Score = 36.2 bits (18), Expect = 2.5
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                                
Query: 13     taattggaatcgtacaat 30
              ||||||||||||||||||
Sbjct: 114940 taattggaatcgtacaat 114923


>dbj|AP001519.1|AP001519 Bacillus halodurans genomic DNA, section 13/14
          Length = 303650

 Score = 36.2 bits (18), Expect = 2.5
 Identities = 18/18 (100%)
 Strand = Plus / Minus

                               
Query: 30    tggagaatttgacggaaa 47
             ||||||||||||||||||
Sbjct: 28875 tggagaatttgacggaaa 28858


>gb|AC095064.3| Homo sapiens chromosome 4 clone RP11-620C21, complete sequence
          Length = 87943

 Score = 34.2 bits (17), Expect = 9.7
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                              
Query: 12    ttaattggaatcgtaca 28
             |||||||||||||||||
Sbjct: 42346 ttaattggaatcgtaca 42362


>gb|AC003029.3| Homo sapiens Chromosome 12q24 PAC RP3-462E2 (Roswell Park Cancer
             Institute Human PAC library) complete sequence
          Length = 137830

 Score = 34.2 bits (17), Expect = 9.7
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                              
Query: 24    gtacaatggagaatttg 40
             |||||||||||||||||
Sbjct: 71491 gtacaatggagaatttg 71507


>gb|AC079248.5| Homo sapiens BAC clone RP11-24J11 from 2, complete sequence
          Length = 128535

 Score = 34.2 bits (17), Expect = 9.7
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                               
Query: 6      tgctgtttaattggaat 22
              |||||||||||||||||
Sbjct: 111999 tgctgtttaattggaat 111983


>gb|AC093865.2| Homo sapiens chromosome 2 clone RP11-560C24, complete sequence
          Length = 186218

 Score = 34.2 bits (17), Expect = 9.7
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                               
Query: 5      atgctgtttaattggaa 21
              |||||||||||||||||
Sbjct: 113514 atgctgtttaattggaa 113530


>gb|AC010202.6|AC010202 Homo sapiens 12q BAC RP11-210L7 (Roswell Park Cancer Institute Human
             BAC Library) complete sequence
          Length = 170004

 Score = 34.2 bits (17), Expect = 9.7
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                              
Query: 4     aatgctgtttaattgga 20
             |||||||||||||||||
Sbjct: 95294 aatgctgtttaattgga 95310


>gb|AC017118.3|AC017118 Genomic sequence for Arabidopsis thaliana BAC F6N18 from chromosome I,
             complete sequence
          Length = 92219

 Score = 34.2 bits (17), Expect = 9.7
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                              
Query: 14    aattggaatcgtacaat 30
             |||||||||||||||||
Sbjct: 84400 aattggaatcgtacaat 84416


>emb|AL355520.8|AL355520 Human DNA sequence from clone RP4-595C2 on chromosome 1q24.1-25.3
             Contains ESTs, STSs and GSSs. Contains the 3' part of the
             gene for two isoforms of the KIAA0351 protein and the gene
             for angiopoietin Y1, complete sequence [Homo sapiens]
          Length = 157575

 Score = 34.2 bits (17), Expect = 9.7
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                              
Query: 5     atgctgtttaattggaa 21
             |||||||||||||||||
Sbjct: 80465 atgctgtttaattggaa 80481


>emb|AL137879.15|AL137879 Human DNA sequence from clone RP11-153O23 on chromosome 13, complete
             sequence [Homo sapiens]
          Length = 85149

 Score = 34.2 bits (17), Expect = 9.7
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                              
Query: 25    tacaatggagaatttga 41
             |||||||||||||||||
Sbjct: 41783 tacaatggagaatttga 41799


>gb|AC006395.1|AC006395 Homo sapiens PAC clone RP3-394H4 from Xq23, complete sequence
          Length = 72291

 Score = 34.2 bits (17), Expect = 9.7
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                              
Query: 1     aggaatgctgtttaatt 17
             |||||||||||||||||
Sbjct: 40047 aggaatgctgtttaatt 40063


>gb|AE000650.1|AE000650 Helicobacter pylori 26695 section 128 of 134 of the complete genome
          Length = 11043

 Score = 34.2 bits (17), Expect = 9.7
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                             
Query: 36   atttgacggaaatagaa 52
            |||||||||||||||||
Sbjct: 1772 atttgacggaaatagaa 1756


>gb|AC006924.3|AC006924 Homo sapiens, clone hRPK.32_A_1, complete sequence
          Length = 165633

 Score = 34.2 bits (17), Expect = 9.7
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                              
Query: 4     aatgctgtttaattgga 20
             |||||||||||||||||
Sbjct: 11360 aatgctgtttaattgga 11344


>gb|AC006266.1|AC006266 Arabidopsis thaliana BAC F1K3 from chromosome IV near 21 cM, complete
             sequence
          Length = 105680

 Score = 34.2 bits (17), Expect = 9.7
 Identities = 20/21 (95%)
 Strand = Plus / Minus

                                  
Query: 20    aatcgtacaatggagaatttg 40
             ||||||||||||||| |||||
Sbjct: 52077 aatcgtacaatggagtatttg 52057


>gb|U32797.1|U32797 Haemophilus influenzae Rd section 112 of 163 of the complete genome
          Length = 10274

 Score = 34.2 bits (17), Expect = 9.7
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                             
Query: 26   acaatggagaatttgac 42
            |||||||||||||||||
Sbjct: 2447 acaatggagaatttgac 2431


>emb|AJ286341.1|HIM286341 Human immunodeficiency virus type 1 proviral env gene for gp160,
            genomic RNA, isolate M2424/4, clone 1
          Length = 2586

 Score = 34.2 bits (17), Expect = 9.7
 Identities = 20/21 (95%)
 Strand = Plus / Plus

                                 
Query: 7    gctgtttaattggaatcgtac 27
            |||||||||||||||| ||||
Sbjct: 1176 gctgtttaattggaatagtac 1196


>emb|AL161561.2|ATCHRIV61 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 61
          Length = 198402

 Score = 34.2 bits (17), Expect = 9.7
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                               
Query: 44     gaaatagaatcaacgat 60
              |||||||||||||||||
Sbjct: 146009 gaaatagaatcaacgat 146025


>emb|AL161508.2|ATCHRIV20 Arabidopsis thaliana DNA chromosome 4, contig fragment No. 20
          Length = 196517

 Score = 34.2 bits (17), Expect = 9.7
 Identities = 20/21 (95%)
 Strand = Plus / Minus

                                   
Query: 20     aatcgtacaatggagaatttg 40
              ||||||||||||||| |||||
Sbjct: 180658 aatcgtacaatggagtatttg 180638


>emb|AL035356.1|ATF22K18 Arabidopsis thaliana DNA chromosome 4, BAC clone  F22K18 (ESSAII project)
          Length = 125803

 Score = 34.2 bits (17), Expect = 9.7
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                               
Query: 44     gaaatagaatcaacgat 60
              |||||||||||||||||
Sbjct: 102901 gaaatagaatcaacgat 102885


>emb|AJ132676.1|MMU132676 Mus musculus IgVk gh33r pseudogene
          Length = 737

 Score = 34.2 bits (17), Expect = 9.7
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                            
Query: 13  taattggaatcgtacaa 29
           |||||||||||||||||
Sbjct: 317 taattggaatcgtacaa 301


>emb|AJ132673.1|MMU132673 Mus musculus IgVk gd33r pseudogene
          Length = 813

 Score = 34.2 bits (17), Expect = 9.7
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                            
Query: 13  taattggaatcgtacaa 29
           |||||||||||||||||
Sbjct: 318 taattggaatcgtacaa 302


>emb|AJ132672.1|MMU132672 Mus musculus IgVk gc33r pseudogene
          Length = 736

 Score = 34.2 bits (17), Expect = 9.7
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                            
Query: 13  taattggaatcgtacaa 29
           |||||||||||||||||
Sbjct: 318 taattggaatcgtacaa 302


>emb|Z74955.1|SCYOR047C S.cerevisiae chromosome XV reading frame ORF YOR047c
          Length = 3461

 Score = 34.2 bits (17), Expect = 9.7
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                            
Query: 24  gtacaatggagaatttg 40
           |||||||||||||||||
Sbjct: 473 gtacaatggagaatttg 489


>emb|Z74954.1|SCYOR046C S.cerevisiae chromosome XV reading frame ORF YOR046c
          Length = 2310

 Score = 34.2 bits (17), Expect = 9.7
 Identities = 17/17 (100%)
 Strand = Plus / Plus

                             
Query: 24   gtacaatggagaatttg 40
            |||||||||||||||||
Sbjct: 1605 gtacaatggagaatttg 1621


>gb|U28135.1|SCU28135 Saccharomyces cerevisiae DEAD-Box Protein 5 (DBP5) gene, complete cds
          Length = 3696

 Score = 34.2 bits (17), Expect = 9.7
 Identities = 17/17 (100%)
 Strand = Plus / Minus

                             
Query: 24   gtacaatggagaatttg 40
            |||||||||||||||||
Sbjct: 1212 gtacaatggagaatttg 1196


  Database: All GenBank+EMBL+DDBJ+PDB sequences (but no EST, STS, GSS,
  or phase 0, 1 or 2 HTGS sequences)
    Posted date:  Jan 31, 2002 11:56 PM
  Number of letters in database: 382,408,035
  Number of sequences in database:  1,083,200
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 117,267
Number of Sequences: 1083200
Number of extensions: 117267
Number of successful extensions: 7699
Number of sequences better than 10.0: 31
length of query: 60
length of database: 4,677,375,331
effective HSP length: 19
effective length of query: 41
effective length of database: 4,656,794,531
effective search space: 190928575771
effective search space used: 190928575771
T: 0
A: 30
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 17 (34.2 bits)

