BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= NP_006065
         (442 letters)

Database: Homo_sapiens.NCBI36.apr.pep.fa 
           48,851 sequences; 23,910,368 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

ENSP00000350182 pep:novel clone::BX322644.8:4905:15090:-1 gene:E...   120   3e-27
ENSP00000350182 pep:novel clone::BX322644.8:4905:15090:-1 gene:E...   120   3e-27
ENSP00000327738 pep:known-ccds chromosome:NCBI36:4:189297592:189...   115   8e-26

>ENSP00000350182 pep:novel clone::BX322644.8:4905:15090:-1 gene:ENSG00000137397
           transcript:ENST00000357569 
          Length = 425

 Score =  120 bits (301), Expect = 3e-27
 Identities = 76/261 (29%), Positives = 140/261 (53%), Gaps = 21/261 (8%)

Query: 9   IEKEVTCPICLELLTEPLSLDCGHSFCQACITAKIKESVIISRGESSCPVCQTRFQPGNL 68
           +++EV CPICL++L +P+++DCGH+FC  CIT +I E+   S G   CP+C+T  +   +
Sbjct: 10  LQEEVICPICLDILQKPVTIDCGHNFCLKCIT-QIGET---SCGFFKCPLCKTSVRKNAI 65

Query: 69  RPNRHLANIVERVKEVKMSP-QEGQKRDVCEHHGKKLQIFCKEDGKVICWVCELSQEHQG 127
           R N  L N+VE+++ ++ S  Q  +K   C  H +    FC++DGK +C+VC  S++H+ 
Sbjct: 66  RFNSLLRNLVEKIQALQASEVQSKRKEATCPRHQEMFHYFCEDDGKFLCFVCCESKDHKS 125

Query: 128 HQTFRINEVVKECQEKLQVALQRLIKEDQEAEKLED------DIRQERTAWKIERQKILK 181
           H    I E  +  Q ++Q  +Q L ++++E  +++       D+  ++   + E+Q+IL 
Sbjct: 126 HNVSLIEEAAQNYQGQIQEQIQVLQQKEKETVQVKAQGVHRVDVFTDQV--EHEKQRILT 183

Query: 182 GFNEMRVILDNEEQRELQKL----EEGEVNVLDNLAAATDQLVQQRQDASTLISDLQRRL 237
            F  +  +L+ E+   L ++     EG       +A+   QL     D   L+  L+ + 
Sbjct: 184 EFELLHQVLEEEKNFLLSRIYWLGHEGTEAGKHYVASTEPQL----NDLKKLVDSLKTKQ 239

Query: 238 TGSSVEMLQDVIDVMKRSESW 258
                ++L+     + RSE +
Sbjct: 240 NMPPRQLLEVTQPHLPRSEEF 260


>ENSP00000327738 pep:known-ccds chromosome:NCBI36:4:189297592:189305643:1
           gene:ENSG00000184108 transcript:ENST00000332517
           CCDS3851.1
          Length = 468

 Score =  115 bits (289), Expect = 8e-26
 Identities = 101/410 (24%), Positives = 180/410 (43%), Gaps = 39/410 (9%)

Query: 8   DIEKEVTCPICLELLTEPLSLDCGHSFCQACITAKIKESVIISRGESSCPVCQTRFQPGN 67
           ++ +E+TC ICL+  + P++ +CGHSFC  C+    +E         SCP C    +  +
Sbjct: 9   NLREELTCFICLDYFSSPVTTECGHSFCLVCLLRSWEE----HNTPLSCPECWRTLEGPH 64

Query: 68  LRPNRHLANIVERVKEVKMSPQEGQKRDVCEHHGK-----KLQIFCKEDGKVICWVCELS 122
            + N  L  +    ++++   Q  Q  D    +G+     K     ++ G        ++
Sbjct: 65  FQSNERLGRLASIARQLR--SQVLQSEDEQGSYGRMPTTAKALSDDEQGGSAF-----VA 117

Query: 123 QEHQGHQTFRINEVVKECQEKLQVALQRLIKEDQEA------EKLEDDIRQERTAWKIER 176
           Q H  ++    +E  +  +EKLQ  L  L    +EA      EK    + QE T  K  +
Sbjct: 118 QSHGANRVHLSSEAEEHHREKLQEILNLLRVRRKEAQAVLTHEKERVKLCQEET--KTCK 175

Query: 177 QKILKGFNEMRVILDNEEQRELQKLEEGEVNVLDNLAAATDQLVQQRQDASTLISDLQRR 236
           Q ++  + +M   L  EEQ +LQ LE+ E   +  L     +L QQ +  S +I+ ++  
Sbjct: 176 QVVVSEYMKMHQFLKEEEQLQLQLLEQEEKENMRKLRNNEIKLTQQIRSLSKMIAQIESS 235

Query: 237 LTGSSVEMLQDVIDVMKRSESWTXXXXXXXXXXXXXXFRVPDLSGMLQVLKELTDVQYYW 296
              S+ E L++V   ++RSE                   +  ++GM ++L++ +      
Sbjct: 236 SQSSAFESLEEVRGALERSE----PLLLQCPEATTTELSLCRITGMKEMLRKFS------ 285

Query: 297 VDVMLNPGSATSNVAISVDQRQVKTVRTCTFKNSNPCDF-SAFGVFGCQYFSSGKYYWEV 355
            ++ L+P +A + + +S D + VK   +      NP  F  +  V G Q F+SG++YWEV
Sbjct: 286 TEITLDPATANAYLVLSEDLKSVKYGGSRQQLPDNPERFDQSATVLGTQIFTSGRHYWEV 345

Query: 356 DVSGKIAWILGVHSKISSLNKRKSSGFAFDPSVNYSKVYSRYRPQYGYWV 405
           +V  K  W +G+     S    +       P   +S +  +    Y  WV
Sbjct: 346 EVGNKTEWEVGICKDSVS----RKGNLPKPPGDLFSLIGLKIGDDYSLWV 391


  Database: Homo_sapiens.NCBI36.apr.pep.fa
    Posted date:  Jun 15, 2006  8:56 PM
  Number of letters in database: 23,910,368
  Number of sequences in database:  48,851
  
Lambda     K      H
   0.319    0.133    0.398 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,900,506
Number of Sequences: 48851
Number of extensions: 899179
Number of successful extensions: 6075
Number of sequences better than 1.0e-25: 105
Number of HSP's better than  0.0 without gapping: 18
Number of HSP's successfully gapped in prelim test: 87
Number of HSP's that attempted gapping in prelim test: 5632
Number of HSP's gapped (non-prelim): 157
length of query: 442
length of database: 23,910,368
effective HSP length: 107
effective length of query: 335
effective length of database: 18,683,311
effective search space: 6258909185
effective search space used: 6258909185
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 289 (115.9 bits)
