genewise $Name: not supported by cvs2svn $ (unreleased release)
This program is freely distributed under a GPL. See source directory
Copyright (c) GRL limited: portions of the code are from separate copyright

Query protein:       SINFRUP00000067802
Comp Matrix:         blosum62.bla
Gap open:            12
Gap extension:       2
Start/End            default
Target Sequence      Scaffold_2042.1
Strand:              forward
Start/End (protein)  default
Gene Paras:          human.gf
Codon Table:         codon.table
Subs error:          1e-05
Indel error:         1e-05
Model splice?        model
Model codon bias?    flat
Model intron bias?   tied
Null model           syn
Algorithm            623

genewise output
Score 2054.68 bits over entire alignment
Scores as bits over a synchronous coding model

Warning: The bits scores is not probablistically correct for single seqs
See WWW help for more info

SINFRUP00000067    1 LDEDQLSHSSSRLSRSPLKGVKKAKIMQCKVTLLDNSDYTIDVE      
                     LDEDQLSHSSSRLSRSPLKGVKKAKIMQCKVTLLDNSDYTIDVE      
                     LDEDQLSHSSSRLSRSPLKGVKKAKIMQCKVTLLDNSDYTIDVE      
Scaffold_2042.122265 cgggcttcaaacctatccaggaagaaactagatcgatgtaaggg      
                     taaaatcaggggtcgcctagtaacattagatcttaacaactata      
                     gcgcgactccttccgtcgaacgaggaggtacaggcccccattag      


SINFRUP00000067   45                            KGARGQMLFDKVCEHLNLLERD 
                                                KGARGQMLFDKVCEHLNLLERD 
                                                KGARGQMLFDKVCEHLNLLERD 
Scaffold_2042.122397 GTGAGCA  Intron 1       CAGaggagcactgagtgccatcgag 
                     <0-----[22397  :  24223]-0>agcggatttaatgaatattaga 
                                                aacgcagcttaatgtatacgac 


SINFRUP00000067   67 YFGITYRDVENQK                           NWLDPSKEL 
                     YFGITYRDVENQK                           NWLDPSKEL 
                     YFGITYRDVENQK                           NWLDPSKEL 
Scaffold_2042.124290 ttgaatagggacaGTAAATA  Intron 2       CAGatcgctagc 
                     atgtcagataaaa<0-----[24329  :  24470]-0>agtaccaat 
                     ctccatactgtgg                           tggtttagg 


SINFRUP00000067   89 KKQIR                              GPWNFAFNVKFYPP 
                     KKQIR                              GPWNFAFNVKFYPP 
                     KKQIR          T:T[act]            GPWNFAFNVKFYPP 
Scaffold_2042.124498 aacacAGTAAGCA  Intron 3       CAGCTgctatgtagattcc 
                     aaatg <1-----[24514  :  24586]-1>  gcgatctatatacc 
                     aggcg                              tcgctcctcgtcta 


SINFRUP00000067  109 DPVQLAEDIT                              YYLCLQLRD 
                     DPVQLAEDIT                              YYLCLQLRD 
                     DPVQLAEDIT           R:R[agg]           YYLCLQLRD 
Scaffold_2042.124631 gcgccgggaaAGGTAAGAG  Intron 4       CAGGttttcccag 
                     actatcaatc  <2-----[24663  :  24816]-2> aatgtatga 
                     ttcggtgcca                              ctgtgggat 


SINFRUP00000067  129 DVVSGRLPCSFATHTVLGSYTVQSELGDYDHEELGSDYLSELRLAPNQT 
                     DVVSGRLPCSFATHTVLGSYTVQSELGDYDHEELGSDYLSELRLAPNQT 
                     DVVSGRLPCSFATHTVLGSYTVQSELGDYDHEELGSDYLSELRLAPNQT 
Scaffold_2042.124845 gggtgccctttgacagcgttagctgcggtgcggcgagtcagcccgcaca 
                     attcggtcgctccacttgcactacatgaaaaaatggaatgatgtccaac 
                     tgtgctgccttcccatactcgggtagactctgggccccctggctaccgc 


SINFRUP00000067  178 KELEEKVMELHKSY                              GMTPG 
                     KELEEKVMELHKSY                              GMTPG 
                     KELEEKVMELHKSY           K:K[aag]           GMTPG 
Scaffold_2042.124992 agcggagagccaatAAGTTGGTT  Intron 5       CAGGgaacg 
                     aataaattataaga  <2-----[25036  :  25161]-2> gtccg 
                     agtgagcgaccgcc                              ggatg 


SINFRUP00000067  198 EAEMHFLENAKKLSMYGVDLHHAK                          
                     EAEMHFLENAKKLSMYGVDLHHAK                          
                     EAEMHFLENAKKLSMYGVDLHHAK                          
Scaffold_2042.125178 gggactcgagaactatgggcccgaGTAATAA  Intron 6         
                     acatattaacaatctagtataaca<0-----[25250  :  26185]  
                     aaggccgatcgggcgccttccctg                          


SINFRUP00000067  222    DSEGVEIMLGVCSSGLLIYRDRLRINRFAWPKILKISYKRNNFYIK 
                        DSEGVEIMLGVCSSGLLIYRDRLRINRFAWPKILKISYKRNNFYIK 
                        DSEGVEIMLGVCSSGLLIYRDRLRINRFAWPKILKISYKRNNFYIK 
Scaffold_2042.126183 TAGgtggggaacggttagccatagatcaaatgtcaacaattaaaattaa 
                     -0>acagtatttgtgcggtttagagtgtagtcgcattatcaagaatata 
                        ctgatgcggatcgccgtccacgggccgttgtaacgttcggtcccca 


SINFRUP00000067  268 IRPGE                           FEQFESTIGFKLPNHRA 
                     IRPGE                           FEQFESTIGFKLPNHRA 
                     IRPGE                           FEQFESTIGFKLPNHRA 
Scaffold_2042.126324 accggGTAATTA  Intron 7       CAGtgctgaaagtaccaccg 
                     tgcga<0-----[26339  :  26457]-0>taatagctgtatcaagc 
                     ctgcg                           tggtgcgctcgtctttt 


SINFRUP00000067  290 AKRLWKVCVEHHTFFRQVMKEVL                           
                     AKRLWKVCVEHHTFFRQVMKEVL                           
                     AKRLWKVCVEHHTFFRQVMKEVL           G:G[ggg]        
Scaffold_2042.126509 gaactagtggccattacgaaggcGGGTTGCCA  Intron 8        
                     cagtgatgtaaacttgattaatt  <2-----[26580  :  26864] 
                     cagcggctggtccccgacggggg                           


SINFRUP00000067  313     LVSPEAPPKKFLSLGSKFRYSGRTQAQTRRASSQIIRPAPFFERS 
                         LVSPEAPPKKFLSLGSKFRYSGRTQAQTRRASSQIIRPAPFFERS 
                         LVSPEAPPKKFLSLGSKFRYSGRTQAQTRRASSQIIRPAPFFERS 
Scaffold_2042.126862 CAGGcgtcggccaatcacgtatctagaacgcaccgatcaaacgcttgct 
                     -2> ttccacccaattgtgcatgagggcacacggcgcattgcccttagc 
                         agttggtaggcgttctgtcctcaggtgcagcctgctattgctgtc 


SINFRUP00000067  359 SSKRYNMSRSLDG                              SSADGV 
                     SSKRYNMSRSLDG                              SSADGV 
                     SSKRYNMSRSLDG          D:D[gac]            SSADGV 
Scaffold_2042.127001 taactaatcatggGGTAGGAT  Intron 9       AAGACatgggg 
                     cgagaatcggtag <1-----[27041  :  27314]-1>  gccagt 
                     ccacccgcttata                              ctttag 


SINFRUP00000067  379 ARVKGNIITTVTPERKAEEENGEQEDAKNDAADKPDPAASSPLHQETKV 
                     ARVKGNIITTVTPERKAEEENGEQEDAKNDAADKPDPAASSPLHQETKV 
                     ARVKGNIITTVTPERKAEEENGEQEDAKNDAADKPDPAASSPLHQETKV 
Scaffold_2042.127335 gcgagaaaaagacgaaggggaggcgggaaggggacgcggtaccccgaag 
                     cgtagattcctccagacaaaagaaaacaaaccaacaccccgctaaacat 
                     tatgatccctatagaaaaagcagggtcgctgacgactttcctccaaaga 


SINFRUP00000067  428 TL                              DPLRSELSLPSSPISFT 
                     TL                              DPLRSELSLPSSPISFT 
                     TL          D:D[gac]            DPLRSELSLPSSPISFT 
Scaffold_2042.127482 acGGTCAACC  Intron 10      CAGACgccctgctccttcatta 
                     ct <1-----[27489  :  28576]-1>  actgcatctcccctctc 
                     aa                              tccctgctccattcact 


SINFRUP00000067  448 KIRRRRRENAHKRASSVSPGKSSTGRCRRQALADRKAALLDEQALLLVA 
                     KIRRRRRENAHKRASSVSPGKSSTGRCRRQALADRKAALLDEQALLLVA 
                     KIRRRRRENAHKRASSVSPGKSSTGRCRRQALADRKAALLDEQALLLVA 
Scaffold_2042.128630 aaccacagagcacgttgacgaaaagctcccgcggcaggccggcgtccgg 
                     atgggggaacaagccctgcgaggcgggggactcagaccttaaacttttc 
                     aagggcggcatgaccactacgccagtcctgctttcatggatgacggcga 


SINFRUP00000067  497 RKQRLEQGRNHGGTLFSFSLHLPDLSSVLDEDGYITFPDLSKMRFLPEC 
                     RKQRLEQGRNHGGTLFSFSLHLPDLSSVLDEDGYITFPDLSKMRFLPEC 
                     RKQRLEQGRNHGGTLFSFSLHLPDLSSVLDEDGYITFPDLSKMRFLPEC 
Scaffold_2042.128777 cacacgcgaacggacttttccccgcttgtggggtaatcgctaactccgt 
                     gaagtaaggaaggcttctctatcatccttaaagatctcatcatgttcag 
                     aggagggcgttccacccccgcgccgctcgcactccccctgcagccctgt 


SINFRUP00000067  546 AQNFLPIKS                              YLCSLLLFTL 
                     AQNFLPIKS                              YLCSLLLFTL 
                     AQNFLPIKS           P:P[cct]           YLCSLLLFTL 
Scaffold_2042.128924 gcatccaatCCGTCACTC  Intron 11      CAGTtcttccctac 
                     caattctac  <2-----[28953  :  30816]-2> atgcttttct 
                     ggccgccga                              ttcggatctc 


SINFRUP00000067  566 FTFFFLCLLNSLHLSSFAVSRKQTRNLKYRLRYTGLTFIDRPCSMHQIL 
                     FTFFFLCLLNSLHLSSFAVSRKQTRNLKYRLRYTGLTFIDRPCSMHQIL 
                     FTFFFLCLLNSLHLSSFAVSRKQTRNLKYRLRYTGLTFIDRPCSMHQIL 
Scaffold_2042.130848 tatttctccatccctttggacacaaacatacatagcatagccttaccac 
                     tcttttgttactatcctctggaacgataagtgacgtcttagcgctaatt 
                     cccttttaatttccctctctgggggtgacacgctgcttctgccggtact 


SINFRUP00000067  615 DILTRCPEPSASTISHFAVSILAYCF                        
                     DILTRCPEPSASTISHFAVSILAYCF                        
                     DILTRCPEPSASTISHFAVSILAYCF                        
Scaffold_2042.130995 gacaatcgctgtaaactggtatgttt                        
                     attcggcaccccctgatctcttcagt                        
                     cccaaccgagaccctcttcccgtccc                        


SINFRUP00000067  641                               EVVKHQTNISELKRSFLET 
                                                   EVVKHQTNISELKRSFLET 
                               S:S[tct]            EVVKHQTNISELKRSFLET 
Scaffold_2042.131073 TGTTGTCA  Intron 12      CAGCTgggaccaaaagcacttcga 
                      <1-----[31074  :  31980]-1>  attaaacatgatagcttac 
                                                   ggcacgccccaggcccggg 


SINFRUP00000067  661 GDGTQGPTEWEKRLSSSPMCSPRFDEAPMIEPLDVSV             
                     GDGTQGPTEWEKRLSSSPMCSPRFDEAPMIEPLDVSV             
                     GDGTQGPTEWEKRLSSSPMCSPRFDEAPMIEPLDVSV             
Scaffold_2042.132040 gggacgcagtgaactttcattcatgggcaagccggag             
                     gagcagccagaagtcccctgccgtaaccttactatgt             
                     ttcgacgcagggggcgtcgcaaattgaggtgggtacc             


SINFRUP00000067  698                               ERTSDSQEDVSERSMLKVS 
                                                   ERTSDSQEDVSERSMLKVS 
                               D:D[gat]            ERTSDSQEDVSERSMLKVS 
Scaffold_2042.132151 GGTCTGCA  Intron 13      CAGATgcatgtcgggtgatataga 
                      <1-----[32152  :  33223]-1>  agccacaaatcagcttatg 
                                                   gactccggcggggagggcc 


SINFRUP00000067  718 PRAVTQEVSQAISDKKGRLIILKDAEHKEEDEEPGEAEGVEKELPPSKE 
                     PRAVTQEVSQAISDKKGRLIILKDAEHKEEDEEPGEAEGVEKELPPSKE 
                     PRAVTQEVSQAISDKKGRLIILKDAEHKEEDEEPGEAEGVEKELPPSKE 
Scaffold_2042.133283 caggacggtcgaagaagacaatagggcagggggcgggggggagtcctag 
                     cgctcaatcactgaaaggttttaacaaaaaaaacgacagtaaatcccaa 
                     cattagagggcctcggagttcgattataggcaacagtacgggagtaaag 


SINFRUP00000067  767 KEMVKEDAADVLASITREIKKQHPKVEIKTNGTQQINGSDSPKKAMVSW 
                     KEMVKEDAADVLASITREIKKQHPKVEIKTNGTQQINGSDSPKKAMVSW 
                     KEMVKEDAADVLASITREIKKQHPKVEIKTNGTQQINGSDSPKKAMVSW 
Scaffold_2042.133430 agagaggggggcgtaaagaaacccaggaaaagaccaagagtcaagagtt 
                     aattaaaccattcctcgataaaacatatacagcaataggaccaacttcg 
                     aagtaacctttgctaagacgggtgggaaatccgagtcttcgtagcgggg 


SINFRUP00000067  816 ISEEVKTVATKEVSEGESVEAPQQTAEIFTFEEEQSKSSPTQITVSESS 
                     ISEEVKTVATKEVSEGESVEAPQQTAEIFTFEEEQSKSSPTQITVSESS 
                     ISEEVKTVATKEVSEGESVEAPQQTAEIFTFEEEQSKSSPTQITVSESS 
Scaffold_2042.133577 atgggaaggaaggagggagggcccaggatatgggctatacacaagtgtt 
                     tcaatactccaatgagagtaccaaccattctaaaacacgccatctcacc 
                     ctggggtcgagaatgagctagggagggccctagggagccgcgcattata 


SINFRUP00000067  865 ASFAVV                              LDTTDAGTKEMPV 
                     ASFAVV                              LDTTDAGTKEMPV 
                     ASFAVV           H:H[cat]           LDTTDAGTKEMPV 
Scaffold_2042.133724 gttgggCAGTATAAA  Intron 14      GAGTcgaagggaagacg 
                     cctctt  <2-----[33744  :  35243]-2> taccacgcaatct 
                     tttgga                              tcctttacaggcg 


SINFRUP00000067  885 IHTETKTITYESAE                           VDTNGDLD 
                     IHTETKTITYESAE                           VDTNGDLD 
                     IHTETKTITYESAE                           VDTNGDLD 
Scaffold_2042.135284 acagaaaaatgtggGTACACA  Intron 15      CAGggaaggtg 
                     tacacactcaacca<0-----[35326  :  36271]-0>tacagata 
                     ccagaatcccgtag                           tctttcgc 


SINFRUP00000067  907 PGVLLSAQTITSEITSTTTTTHITK                         
                     PGVLLSAQTITSEITSTTTTTHITK                         
                     PGVLLSAQTITSEITSTTTTTHITK                         
Scaffold_2042.136296 cggccagcaaatgaaaaaaaacaaaGTCAGTT  Intron 16       
                     cgtttgcactccatcgcccccatca<0-----[36371  :  36567] 
                     cttcgttgcctaatccccacaccag                         


SINFRUP00000067  932    MVKGGISETRIEKRIVISGDADIDHDQ                    
                        MVKGGISETRIEKRIVISGDADIDHDQ                    
                        MVKGGISETRIEKRIVISGDADIDHDQ                    
Scaffold_2042.136565 CAGagaggatgaaagaaagatggggagcgc                    
                     -0>ttaggtcacgtaagtttcgacataaaa                    
                        ggaagtaaaacgagcccaatacctctg                    


SINFRUP00000067  959                            ALAQAIKEAKEQHPDMSVTKVV 
                                                ALAQAIKEAKEQHPDMSVTKVV 
                                                ALAQAIKEAKEQHPDMSVTKVV 
Scaffold_2042.136649 GTCTCTT  Intron 17      CAGgcgcgaaggagcccgatgaagg 
                     <0-----[36649  :  36954]-0>ctcactaacaaaacatctcatt 
                                                tgtgcaagtaagttcgagcaag 


SINFRUP00000067  981 VHKETEITPEEGED                                    
                     VHKETEITPEEGED                                    
                     VHKETEITPEEGED                                    
Scaffold_2042.137021 gcagagaacggggg                                    
                     taaacatccaagaa                                    
                     atagagcgaagggc                                    


//
Gene 1
Gene 22265 37062 
  Exon 22265 22396 phase 0
     Supporting 22265 22396 1 44
  Exon 24224 24328 phase 0
     Supporting 24224 24328 45 79
  Exon 24471 24513 phase 0
     Supporting 24471 24512 80 93
  Exon 24587 24662 phase 1
     Supporting 24589 24660 95 118
  Exon 24817 25035 phase 2
     Supporting 24818 25033 120 191
  Exon 25162 25249 phase 2
     Supporting 25163 25249 193 221
  Exon 26186 26338 phase 0
     Supporting 26186 26338 222 272
  Exon 26458 26579 phase 0
     Supporting 26458 26577 273 312
  Exon 26865 27040 phase 2
     Supporting 26866 27039 314 371
  Exon 27315 27488 phase 1
     Supporting 27317 27487 373 429
  Exon 28577 28952 phase 1
     Supporting 28579 28950 431 554
  Exon 30817 31073 phase 2
     Supporting 30818 31072 556 640
  Exon 31981 32151 phase 1
     Supporting 31983 32150 642 697
  Exon 33224 33743 phase 1
     Supporting 33226 33741 699 870
  Exon 35244 35325 phase 2
     Supporting 35245 35325 872 898
  Exon 36272 36370 phase 0
     Supporting 36272 36370 899 931
  Exon 36568 36648 phase 0
     Supporting 36568 36648 932 958
  Exon 36955 37062 phase 0
     Supporting 36955 37062 959 994
//
