BLASTP 2.1.3 [Apr-11-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= CATH_RAT
         (333 letters)

Database: /data_2/jason/blastdb/wormpep62
           20,085 sequences; 8,813,425 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

T03E6.7 CE16333   cathepsin-like protease (HINXTON) TR:O4573...   196  2e-50
F41E6.6 CE10254   cysteine protease and a protease inhibitor...   166  2e-41
R09F10.1 CE28755   peptidase (ST.LOUIS) TR:Q23030 protein_id...   162  3e-40
R07E3.1 CE02295   cysteine proteinase (HINXTON) TR:Q21810 pr...   126  2e-29
Y40H7A.10 CE21821   Cysteine protease (HINXTON) TR:Q9XWA4 pr...   123  1e-28

>T03E6.7 CE16333   cathepsin-like protease (HINXTON) TR:O45734
           protein_id:CAB07275.1
          Length = 337

 Score =  196 bits (498), Expect = 2e-50
 Identities = 122/318 (38%), Positives = 174/318 (54%), Gaps = 21/318 (6%)

Query: 26  NAIEKFHFTSWMKQHQKTYSSREYSHRLQVFANNWRKIQAHNQRNH-----TFKMGLNQF 80
           +AIEK+    + +   K YS  E    ++ F  N   I+ HN R+H     TF+MGLN  
Sbjct: 27  SAIEKWD--DYKEDFDKEYSESEEQTYMEAFVKNMIHIENHN-RDHRLGRKTFEMGLNHI 83

Query: 81  SDMSFAEIK----HKYLWSEPQNCSATKSNYLRGTG-PYPSSMDWRKKGNVVSPVKNQGA 135
           +D+ F++ +    ++ L+ + +      S++L       P  +DWR   ++V+ VKNQG 
Sbjct: 84  ADLPFSQYRKLNGYRRLFGDSR--IKNSSSFLAPFNVQVPDEVDWRDT-HLVTDVKNQGM 140

Query: 136 CGSCWTFSTTGALESAVAIASGKMMTLAEQQLVDCAQNFNNHGCQGGLPSQAFEYILYNK 195
           CGSCW FS TGALE   A   G++++L+EQ LVDC+  + NHGC GGL  QAFEYI  N 
Sbjct: 141 CGSCWAFSATGALEGQHARKLGQLVSLSEQNLVDCSTKYGNHGCNGGLMDQAFEYIRDNH 200

Query: 196 GIMGEDSYPYIGKNGQCKFNPEKAVAFVKNVVNITLNDEAAMVEAVALYNPVSFAFEV-T 254
           G+  E+SYPY G++ +C FN +   A  K  V+    DE  +  AVA   P+S A +   
Sbjct: 201 GVDTEESYPYKGRDMKCHFNKKTVGADDKGYVDTPEGDEEQLKIAVATQGPISIAIDAGH 260

Query: 255 EDFMMYKSGVYSSNSCHKTPDKVNHAVLAVGYG-EQNGLLYWIVKXXXXXXXXXXXYFLI 313
             F +YK GVY    C  + ++++H VL VGYG +     YWIVK           Y  I
Sbjct: 261 RSFQLYKKGVYYDEEC--SSEELDHGVLLVGYGTDPEHGDYWIVKNSWGAGWGEKGYIRI 318

Query: 314 ERGK-NMCGLAACASYPI 330
            R + N CG+A  ASYP+
Sbjct: 319 ARNRNNHCGVATKASYPL 336


>F41E6.6 CE10254   cysteine protease and a protease inhibitor (ST.LOUIS)
           TR:O16454 protein_id:AAB65956.1
          Length = 498

 Score =  166 bits (419), Expect = 2e-41
 Identities = 108/325 (33%), Positives = 155/325 (47%), Gaps = 35/325 (10%)

Query: 33  FTSWMKQHQKTYSS-REYSHRLQVFANNWRKI-QAHNQRNHTFKMGLNQFSDMSFAEIKH 90
           F  ++ +H+K Y++ RE   R +VF  N + I +       T   G  +FSDM+  E K 
Sbjct: 174 FLDFVDRHEKKYTNKREVLKRFRVFKKNAKVIRELQKNEQGTAVYGFTKFSDMTTMEFKK 233

Query: 91  ---KYLWSEP----QNCSATKSNYLRGTGPYPSSMDWRKKGNVVSPVKNQGACGSCWTFS 143
               Y W +P    +  +  K +        P S DWR+KG  V+ VKNQG CGSCW FS
Sbjct: 234 IMLPYQWEQPVYPMEQANFEKHDVTINEEDLPESFDWREKG-AVTQVKNQGNCGSCWAFS 292

Query: 144 TTGALESAVAIASGKMMTLAEQQLVDCAQNFNNHGCQGGLPSQAFE------------YI 191
           TTG +E A  IA  K+++L+EQ+LVDC  +  + GC GGLPS A++             +
Sbjct: 293 TTGNVEGAWFIAKNKLVSLSEQELVDC--DSMDQGCNGGLPSNAYKIGKFVVSDNYCFLV 350

Query: 192 LYNK---------GIMGEDSYPYIGKNGQCKFNPEKAVAFVKNVVNITLNDEAAMVEAVA 242
            Y+K         G+  ED+YPY G+   C    +    ++   V +  +DE  M + + 
Sbjct: 351 FYHKTTKEIIRMGGLEPEDAYPYDGRGETCHLVRKDIAVYINGSVELP-HDEVEMQKWLV 409

Query: 243 LYNPVSFAFEVTEDFMMYKSGVYSSNSCHKTPDKVNHAVLAVGYGEQNGLLYWIVKXXXX 302
              P+S           Y+ GV         P  +NH VL VGYG+     YWIVK    
Sbjct: 410 TKGPISIGLN-ANTLQFYRHGVVHPFKIFCEPFMLNHGVLIVGYGKDGRKPYWIVKNSWG 468

Query: 303 XXXXXXXYFLIERGKNMCGLAACAS 327
                  YF + RGKN+CG+   A+
Sbjct: 469 PNWGEAGYFKLYRGKNVCGVQEMAT 493


>R09F10.1 CE28755   peptidase (ST.LOUIS) TR:Q23030 protein_id:AAC69091.2
          Length = 383

 Score =  162 bits (410), Expect = 3e-40
 Identities = 97/304 (31%), Positives = 157/304 (50%), Gaps = 19/304 (6%)

Query: 37  MKQHQKTYSSREYSHRLQVFANNWRKIQAHNQRNHTFKMGLNQFSDMSFAEIKH------ 90
           +K  +K  S  E+ +R Q+F  N  + +A  +RN    + +N+F+D +  E++       
Sbjct: 87  LKFDRKYTSVEEFEYRYQIFLRNVIEFEAEEERNLGLDLDVNEFTDWTDEELQKMVQENK 146

Query: 91  --KYLWSEPQNCSATKSNYLRGTGPYPSSMDWRKKGNVVSPVKNQGACGSCWTFSTTGAL 148
             KY +  P+     + +YL      P+S+DWR++G + +P+KNQG CGSCW F+T  ++
Sbjct: 147 YTKYDFDTPK----FEGSYLETGVIRPASIDWREQGKL-TPIKNQGQCGSCWAFATVASV 201

Query: 149 ESAVAIASGKMMTLAEQQLVDCAQNFNNHGCQGGLPSQAFEYILYNKGIMGEDSYPYIG- 207
           E+  AI  GK+++L+EQ++VDC  +  N+GC GG    A +++  N G+  E  YPY   
Sbjct: 202 EAQNAIKKGKLVSLSEQEMVDC--DGRNNGCSGGYRPYAMKFVKEN-GLESEKEYPYSAL 258

Query: 208 KNGQCKFNPEKAVAFVKNVVNITLNDEAAMVEAVALYNPVSFAFEVTEDFMMYKSGVYSS 267
           K+ QC         F+ +   +  N+E  +   V    PV+F   V +    Y+SG+++ 
Sbjct: 259 KHDQCFLKENDTRVFIDD-FRMLSNNEEDIANWVGTKGPVTFGMNVVKAMYSYRSGIFNP 317

Query: 268 NSCHKTPDKVN-HAVLAVGYGEQNGLLYWIVKXXXXXXXXXXXYFLIERGKNMCGLAACA 326
           +    T   +  HA+  +GYG +    YWIVK           YF + RG N CGLA   
Sbjct: 318 SVEDCTEKSMGAHALTIIGYGGEGESAYWIVKNSWGTSWGASGYFRLARGVNSCGLANTV 377

Query: 327 SYPI 330
             PI
Sbjct: 378 VAPI 381


>R07E3.1 CE02295   cysteine proteinase (HINXTON) TR:Q21810
           protein_id:CAA89070.1
          Length = 402

 Score =  126 bits (316), Expect = 2e-29
 Identities = 97/325 (29%), Positives = 152/325 (45%), Gaps = 31/325 (9%)

Query: 20  TAELTVNAIEKFHFTSWMKQHQKTYS-SREYSHRLQVFANNWRKIQAHNQRNH--TFKMG 76
           T E  +  I K  + ++ ++  K+Y+ S+E   RL  + N    I   N +N   + + G
Sbjct: 78  TNERGIQNIAK-EYIAYTEKFDKSYATSQESLKRLNAYYNTDENIANWNIQNEHGSAEYG 136

Query: 77  LNQFSDMSFAEIK--------HKYLWSE-------PQNCSATKSNYLRGTGPYPSSMDWR 121
            N  SD +  E +        +K L  E       P++ +A K      + P+P   DWR
Sbjct: 137 HNDMSDWTDEEFEKTLLPKSFYKRLHKEAEFIEPIPESLTAKKGE---SSSPFPDFFDWR 193

Query: 122 KKGNVVSPVKNQGACGSCWTFSTTGALESAVAIASGKMMTLAEQQLVDCAQNFNNHGCQG 181
            K NV++PVK QG CGSCW F++T  +E+A AIA G+   L+EQ L+DC  +  ++ C G
Sbjct: 194 DK-NVITPVKAQGQCGSCWAFASTATVEAAWAIAHGEKRNLSEQTLLDC--DLVDNACDG 250

Query: 182 GLPSQAFEYILYNKGIMGEDSYPYIG-KNGQCKFNPEKAVAFVKNVVNITLNDEAAMVEA 240
           G   +AF YI +  G+      PY+  +   C  N       +K       +DE +++  
Sbjct: 251 GDEDKAFRYI-HRNGLANAVDLPYVAHRQNGCAVNDHWNTTRIK-AAYFLHHDEDSIINW 308

Query: 241 VALYNPVSFAFEVTEDFMMYKSGVYSSNSCHKTPDKVN-HAVLAVGYG-EQNGLLYWIVK 298
           +  + PV+    V +    YK GV++ +      + +  HA+L  GYG  + G  YWIVK
Sbjct: 309 LVNFGPVNIGMAVIQPMRAYKGGVFTPSEYACKNEVIGLHALLITGYGTSKTGEKYWIVK 368

Query: 299 XX-XXXXXXXXXYFLIERGKNMCGL 322
                       Y    RG N CG+
Sbjct: 369 NSWGNTWGVEHGYIYFARGINACGI 393


>Y40H7A.10 CE21821   Cysteine protease (HINXTON) TR:Q9XWA4
           protein_id:CAA22062.1
          Length = 343

 Score =  123 bits (309), Expect = 1e-28
 Identities = 92/304 (30%), Positives = 145/304 (47%), Gaps = 26/304 (8%)

Query: 26  NAIEKFHFTSWMKQHQKTYSSREYSHRLQVFANNWRKIQAHNQRNH---TFKMGLNQFSD 82
           NA + F    +++++   Y   E   R  +F+ N   ++ +N+ +    T++  LN FSD
Sbjct: 49  NAFQNF-LVKYLREYPNEY---EIVKRFTIFSRNLDLVERYNKEDAGKVTYE--LNDFSD 102

Query: 83  MSFAEIKHKYLWSEPQNCSAT-KSNYLRGTGPYPSSMDWRKKG--NVVSPVKNQGACGSC 139
           ++  E K   +  +P +   + K   L      P+S+DWR     N V+ +K QG CGSC
Sbjct: 103 LTEEEWKKYLMTPKPDHSEKSLKPKTLIDKKNLPNSVDWRNVNGTNHVTGIKYQGPCGSC 162

Query: 140 WTFSTTGALESAVAIASGKMMTLAEQQLVDCAQNFNNHGCQGGLPSQAFEYILYNKGIMG 199
           W F+T  A+ESAV+I+ G + +L+ QQL+DC     +  C GG P +A +Y   + GI  
Sbjct: 163 WAFATAAAIESAVSISGGGLQSLSSQQLLDC--TVVSDKCGGGEPVEALKY-AQSHGITT 219

Query: 200 EDSYPYIGKNGQCKFNPEKAVAFVKNVVNITLNDEAAMVEAVALYNP-VSFAFEVTEDFM 258
             +YPY     +C+      VA + + +     DE  M + VAL  P +  A   T    
Sbjct: 220 AHNYPYYFWTTKCR-ETVPTVARISSWMKAESEDE--MAQIVALNGPMIVCANFATNKNR 276

Query: 259 MYKSGVYSSNSCHKTPDKVNHAVLAVGYGEQNGLLYWIVKXXXXXXXXXXXYFLIERGKN 318
            Y SG+     C   P    HA++ +GYG      YWI+K           Y  ++R  N
Sbjct: 277 FYHSGIAEDPDCGTEP---THALIVIGYGPD----YWILKNTYSKVWGEKGYMRVKRDVN 329

Query: 319 MCGL 322
            CG+
Sbjct: 330 WCGI 333


>Y113G7B.15 CE23295    (HINXTON) TR:Q9U2X1 protein_id:CAB54334.1
          Length = 328

 Score =  120 bits (302), Expect = 9e-28
 Identities = 94/317 (29%), Positives = 140/317 (43%), Gaps = 40/317 (12%)

Query: 40  HQKTYSS-REYSHRLQVFANNWRKIQAHNQ------RNHTFKMGLNQFSDMSFAEIKHKY 92
           H+K Y +  E   RL  FA N +KIQ  N       RN TF  G N+F+D +  E+  + 
Sbjct: 3   HKKHYRTPAEKDRRLAHFAKNHQKIQELNAKARREGRNVTF--GWNKFADKNRQELSARN 60

Query: 93  LWSEPQNCSAT---KSNYLRGTGPYPSSMDWRKKGN----------------VVSPVKNQ 133
               P+N +     K  + RG+  + +    R+ G+                VV PVK+Q
Sbjct: 61  SKIHPKNHTDLPIYKPRHPRGSRNHHNKRSKRQSGDIPDYFDLRDIYVDGSPVVGPVKDQ 120

Query: 134 GACGSCWTFSTTGALESAVAIASGKMMTLAEQQLVDCAQNFNNHGCQGGLPSQAFEYILY 193
             CG CW F+TT   E+A  + S    +L++Q++ DCA + +  GC GG P    + +++
Sbjct: 121 EQCGCCWAFATTAITEAANTLYSKSFTSLSDQEICDCADSGDTPGCVGGDPRNGLK-MVH 179

Query: 194 NKGIMGEDSYPY----IGKNGQCKFNPEKAVAFVKNVVNITLND-----EAAMVEAVALY 244
            +G   +  YPY        G C    EK+       +N+   D     E  M      +
Sbjct: 180 LRGQSSDGDYPYEEYRANTTGNC-VGDEKSTVIQPETLNVYRFDQDYAEEDIMENLYLNH 238

Query: 245 NPVSFAFEVTEDFMMYKSGVYSSNSCHKTPDKVNHAVLAVGYG-EQNGLLYWIVKXXXXX 303
            P +  F V E+F  Y SGV  S  C++      H+V  VGYG   +G+ YW+V+     
Sbjct: 239 IPTAVYFRVGENFEWYTSGVLQSEDCYQMTPAEWHSVAIVGYGTSDDGVPYWLVRNSWNS 298

Query: 304 XXXXXXYFLIERGKNMC 320
                 Y  I RG N C
Sbjct: 299 DWGLHGYVKIRRGVNWC 315


>K02E7.10 CE11640   protease (ST.LOUIS) TR:O17255 protein_id:AAB71030.1
          Length = 299

 Score =  114 bits (284), Expect = 1e-25
 Identities = 70/216 (32%), Positives = 107/216 (49%), Gaps = 8/216 (3%)

Query: 118 MDWRKKGNVVSPVKNQGACGSCWTFSTTGALESAVAIAS-GKMMTLAEQQLVDCAQNFNN 176
           +DWR+KG +V PVK+QG C + + F+   A+ES  A A+ GK+++ +EQQ++DCA NF N
Sbjct: 84  LDWREKG-IVGPVKDQGKCNASYAFAAIAAIESMYAKANNGKLLSFSEQQIIDCA-NFTN 141

Query: 177 HGCQGGLPSQAFEYILYNKGIMGEDSYPYIGKN--GQCKFNPEKAVAFVKNVVNITLNDE 234
             CQ  L +      L   G+  E  YPY+GK   G+C+++  K +      +++  N+E
Sbjct: 142 P-CQENLENVLSNRFLKENGVGTEADYPYVGKENVGKCEYDSSK-MKLRPTYIDVYPNEE 199

Query: 235 AAMVEAVALYNPVSFAFEVTEDFMMYKSGVYSSNSCHKTPDKVNHAVLAVGYGEQNGLLY 294
            A    +  +    F       F  YK+G+Y+             ++  VGYG+     Y
Sbjct: 200 WARAH-ITTFGTGYFRMRSPPSFFHYKTGIYNPTKEECGNANEARSLAIVGYGKDGAEKY 258

Query: 295 WIVKXXXXXXXXXXXYFLIERGKNMCGLAACASYPI 330
           WIVK           Y  + R  N CG+A   S PI
Sbjct: 259 WIVKGSFGTSWGEHGYMKLARNVNACGMAESISIPI 294


>C32B5.7 CE08515   cathepsin-like peptidase (ST.LOUIS) TR:P91111
           protein_id:AAB37963.1
          Length = 250

 Score =  108 bits (270), Expect = 5e-24
 Identities = 69/197 (35%), Positives = 104/197 (52%), Gaps = 18/197 (9%)

Query: 106 NYLRGTGPYPSSMDWRKKGNVVSPVKNQGACGSCWTFSTTGALESAVAIASGKMMTLAEQ 165
           NY     P+   +DWR +G VV PVK+QG C + + F+   A+ES  AIA+G++++ +EQ
Sbjct: 63  NYKNAKKPF---LDWRDEG-VVGPVKDQGNCNASYAFAAISAIESMYAIANGQLLSFSEQ 118

Query: 166 QLVDCAQNFNNHGCQ-GGLPSQAFEYILYNKGIMGEDSYPYIG-KNGQCKFNPEKAVAFV 223
           Q++DC       GC     P  A  Y L  KGI     YP++G KN +C+++ +KA   +
Sbjct: 119 QIIDCL-----GGCAIESDPMMAMTY-LERKGIETYTDYPFVGKKNEKCEYDSKKAYLIL 172

Query: 224 KNVVNITLNDEAAMVEAVALYNPVSFAFEVTEDFMMYKSGVY--SSNSCHKTPDKVNHAV 281
            +  +  ++DE+  +  +    P  F       F  YKSG+Y  +   C  T +K   A+
Sbjct: 173 DDTYD--MSDESLALVFIDERGPGLFTMNTPPSFFNYKSGIYNPTEEECKSTNEK--RAL 228

Query: 282 LAVGYGEQNGLLYWIVK 298
             VGYG   G  YWIVK
Sbjct: 229 TIVGYGNDKGQNYWIVK 245


>Y51A2D.8 CE19204   Cysteine proteases (2 domains) (HINXTON) TR:Q9XXQ7
           protein_id:CAA16407.1
          Length = 386

 Score =  106 bits (265), Expect = 2e-23
 Identities = 82/330 (24%), Positives = 137/330 (40%), Gaps = 44/330 (13%)

Query: 33  FTSWMKQHQKTYSSR-EYSHRLQVFANNWRKIQAHNQRN----HTFKMGLNQFSDMSFAE 87
           F  + K++ + Y    E   R   F  ++  +   N ++    +  + G+N+FSD+S AE
Sbjct: 43  FEDFKKKYNRKYKDESENQQRFNNFVKSYNNVDKLNAKSKAAGYDTQFGINKFSDLSTAE 102

Query: 88  IKHKYLWSEPQN------------------CSATKSNYLRGTGPYPSSMDWRKKG----N 125
              +     P N                      K+ + R +  YP   D R +      
Sbjct: 103 FHGRLSNVVPSNNTGLPMLNFDKKKPDFRAADMNKTRHKRRSTRYPDYFDLRNEKINGRY 162

Query: 126 VVSPVKNQGACGSCWTFSTTGALESAVAIASGKMMTLAEQQLVDCAQNFNNHGCQGGLPS 185
           +V P+K+QG C  CW F+ T  +E+  A  SGK  +L++Q++ DC       GC+GG  +
Sbjct: 163 IVGPIKDQGQCACCWGFAVTALVETVYAAHSGKFKSLSDQEVCDCGTE-GTPGCKGGSLT 221

Query: 186 QAFEYILYNKGIMGEDSYPY----IGKNGQCKFNPEKAV----AFVKNVVNITLNDEAAM 237
              +Y+    G+ G++ YPY      +  +C+      +    AF   V+N    +E  +
Sbjct: 222 LGVQYV-KKYGLSGDEDYPYDQNRANQGRRCRLRETDRIVPARAFNFAVINPRRAEEQII 280

Query: 238 VEAVALYNPVSFAFEVTEDFMMYKSGVYSSNSCHKTPDKVNHAVLAVGYG---EQNGLL- 293
                   PV+  F+V + F  YK GV   + C +      HA   VGY    +  G   
Sbjct: 281 QVLTEWKVPVAVYFKVGDQFKEYKEGVIIEDDCRRATQW--HAGAIVGYDTVEDSRGRSH 338

Query: 294 -YWIVKXXXXXXXXXXXYFLIERGKNMCGL 322
            YWI+K           Y  + RG++ C +
Sbjct: 339 DYWIIKNSWGGDWAESGYVRVVRGRDWCSI 368


>Y71H2AR.2 CE22930    (ST.LOUIS) protein_id:AAK29985.1
          Length = 345

 Score =  103 bits (257), Expect = 1e-22
 Identities = 72/235 (30%), Positives = 105/235 (44%), Gaps = 16/235 (6%)

Query: 91  KYLWSEPQNCSATKSNYLRGTGPYPSSMDWRKKGNVVSPVKNQGACGSCWTFSTTGALES 150
           ++ W  P +   T   +L          DWR+KG +V PVK+QG C +   F+ T ++ES
Sbjct: 69  RFQWETPIHMDRTTEEFL----------DWREKG-IVGPVKDQGKCNASHAFAITSSIES 117

Query: 151 AVAIAS-GKMMTLAEQQLVDCAQNFNNHGCQGGLPSQAFEYILYNKGIMGEDSYPYIGK- 208
             A A+ G +++ +EQQL+DC       GC+      A  Y L   GI  E  YPY+ K 
Sbjct: 118 MYAKATNGTLLSFSEQQLIDCNDQ-GYKGCEEQFAMNAIGY-LATHGIETEADYPYVDKT 175

Query: 209 NGQCKFNPEKAVAFVKNVVNITLNDEAAMVEAVALYNPVSFAFEVTEDFMMYKSGVYSSN 268
           N +C F+  K+   +K  V    N+    V  V  Y P  F          YK G+Y+ +
Sbjct: 176 NEKCTFDSTKSKIHLKKGVVAEGNEVLGKVY-VTNYGPAFFTMRAPPSLYDYKIGIYNPS 234

Query: 269 SCHKTPDKVNHAVLAVGYGEQNGLLYWIVKXXXXXXXXXXXYFLIERGKNMCGLA 323
               T      +++ VGYG +    YWIVK           Y  + R  N C +A
Sbjct: 235 IEECTSTHEIRSMVIVGYGIEGEQKYWIVKGSFGTSWGEQGYMKLARDVNACAMA 289


>C50F4.3 CE05468   thiol protease (HINXTON) TR:Q18740 protein_id:CAA94738.1
          Length = 374

 Score =  102 bits (254), Expect = 3e-22
 Identities = 86/319 (26%), Positives = 129/319 (39%), Gaps = 31/319 (9%)

Query: 33  FTSWMKQHQKTYSSR-EYSHRLQVFANNWRKI----QAHNQRNHTFKMGLNQFSDMSFAE 87
           F  ++ ++++ Y    E   R Q F     ++    +A  +  H  K G+N+FSD+S  E
Sbjct: 47  FEDFIVKYKRNYKDEIEKKFRFQQFVATHNRVGKMNKAAKKAGHDTKYGINKFSDLSKKE 106

Query: 88  IKHKYLWSEP--QNCSATKSNYL-----RGTGPYPSSMDWRKKG----NVVSPVKNQGAC 136
           I   Y    P   N +  K N       R     P + D R K      ++ P+K Q +C
Sbjct: 107 IHGMYSKFGPPKNNTNVPKFNLKNLRVKRQMEGLPKTFDLRNKKVGGHYIIGPIKTQDSC 166

Query: 137 GSCWTFSTTGALESAVAIASGKMMTLAEQQLVDCAQNFNNHGCQGGLPSQAFEYILYNKG 196
             CW F+ T   E+A+ +   K M L+EQ++ DCA   +  GC GG P    EYI    G
Sbjct: 167 ACCWGFAATAVAEAALTVHLKKAMNLSEQEVCDCAPK-HGPGCNGGDPVDGLEYI-KEMG 224

Query: 197 IMGEDSYPY-------IGKNGQCKFNPEKAVAFVKNVVNITLNDEAAMVEAVALYN-PVS 248
           + G   YP+       +G+    K++ E     +        N E  M   + L N P+S
Sbjct: 225 LTGGKEYPFNVNRSTQLGRCESEKYDRELNPLELDYYAIDPFNAEYQMTHHLYLLNLPIS 284

Query: 249 FAFEVTEDFMMYKSGVYSSNSCHKTPDKVNHAVLAVGYGEQNG-----LLYWIVKXXXXX 303
            AF        Y SG+     C        H+   VGYG         + YWI +     
Sbjct: 285 VAFRTGASLSSYLSGILELADCDDEKGGHWHSGAIVGYGTTKNSAGRTVDYWIFRNSWWT 344

Query: 304 XXXXXXYFLIERGKNMCGL 322
                 Y  I RG++ C +
Sbjct: 345 DWGDDGYARIVRGEDWCSI 363


>F26E4.3 CE17714   cysteine protease (HINXTON) TR:P90850
           protein_id:CAB03007.1
          Length = 491

 Score = 87.4 bits (215), Expect = 1e-17
 Identities = 70/237 (29%), Positives = 102/237 (42%), Gaps = 33/237 (13%)

Query: 115 PSSMDWRKK-GNVVSPVKNQGACGSCWTFSTTGALESAVAIAS-GKM-MTLAEQQLVDCA 171
           P   D R K G ++ PV +QG CGS W+ STT      +AI S G++  TL+ QQL+ C 
Sbjct: 224 PEHFDARDKWGPLIHPVADQGDCGSSWSVSTTAISSDRLAIISEGRINSTLSSQQLLSCN 283

Query: 172 QNFNNHGCQGGLPSQAFEYILYNKGIMGEDSYPYIGKNG-------------------QC 212
           Q+    GC+GG   +A+ YI    G++G+  YPY+                       +C
Sbjct: 284 QH-RQKGCEGGYLDRAWWYI-RKLGVVGDHCYPYVSGQSREPGHCLIPKRDYTNRQGLRC 341

Query: 213 KFNPEKAVAFVKNVVNITLNDEAAMVEAVALYNPVSFAFEVTEDFMMYKSGVY--SSNSC 270
               + + AF         + E  +   +    PV   F V EDF MY  GVY  S  + 
Sbjct: 342 PSGSQDSTAFKMTPPYKVSSREEDIQTELMTNGPVQATFVVHEDFFMYAGGVYQHSDLAA 401

Query: 271 HKTPDKV---NHAVLAVGYGEQNG----LLYWIVKXXXXXXXXXXXYFLIERGKNMC 320
            K    V    H+V  +G+G  +     + YW+             YF + RG+N C
Sbjct: 402 QKGASSVAEGYHSVRVLGWGVDHSTGKPIKYWLCANSWGTQWGEDGYFKVLRGENHC 458


>C52E4.1 CE08943  locus:cpr-1 cathepsin-like cysteine protease (HINXTON)
           TR:Q18783 protein_id:CAB01410.1
          Length = 340

 Score = 85.1 bits (209), Expect = 5e-17
 Identities = 67/269 (24%), Positives = 111/269 (40%), Gaps = 33/269 (12%)

Query: 82  DMSFAEIKHKYLWSEPQNCSATKSNYLRGTGP--YPSSMDWRKKGNVVSPVKNQGACGSC 139
           +M F  +  KY  +      AT+   +  + P  + S   W +  ++   +++Q  CGSC
Sbjct: 66  EMKFKLMDGKYAAAHSDEIRATEQEVVLASVPATFDSRTQWSECKSI-KLIRDQATCGSC 124

Query: 140 WTFSTTGALESAVAIAS--GKMMTLAEQQLVDCAQNFNNHGCQGGLPSQAFEYILYNKGI 197
           W F     +     I +   +   ++   L+ C  +   +GC+GG P QA  +   +KG+
Sbjct: 125 WAFGAAEMISDRTCIETKGAQQPIISPDDLLSCCGSSCGNGCEGGYPIQALRW-WDSKGV 183

Query: 198 MGEDSYPYIG-----------------KNGQCKFNPEK--AVAFVKN----VVNITLNDE 234
           +    Y   G                 K   C  + +   + A+ K+    V    +   
Sbjct: 184 VTGGDYHGAGCKPYPIAPCTSGNCPESKTPSCSMSCQSGYSTAYAKDKHFGVSAYAVPKN 243

Query: 235 AAMVEAVALYN-PVSFAFEVTEDFMMYKSGVYSSNSCHKTPDKVNHAVLAVGYGEQNGLL 293
           AA ++A    N PV  AF V EDF  YKSGVY   +         HA+  +G+G ++G  
Sbjct: 244 AASIQAEIYANGPVEAAFSVYEDFYKYKSGVYKHTAGKYLG---GHAIKIIGWGTESGSP 300

Query: 294 YWIVKXXXXXXXXXXXYFLIERGKNMCGL 322
           YW+V            +F I RG + CG+
Sbjct: 301 YWLVANSWGVNWGESGFFKIYRGDDQCGI 329


>M04G12.2 CE12424   cysteine protease (HINXTON) TR:P92005
           protein_id:CAB03209.1
          Length = 467

 Score = 75.1 bits (183), Expect = 6e-14
 Identities = 68/224 (30%), Positives = 100/224 (44%), Gaps = 44/224 (19%)

Query: 101 SATKSNYLRGTGPYPSSMDWRKKG--NVVSPVKNQGA---CGSCWTFSTTGALESAVAIA 155
           S+ KSN L      P+  DWR     N  SP +NQ     CGSCW F TTGAL     +A
Sbjct: 214 SSFKSNDL------PTGWDWRNVSGVNYCSPTRNQHIPVYCGSCWVFGTTGALNDRFNVA 267

Query: 156 -SGK--MMTLAEQQLVDCAQNFNNHGCQGGLPSQAFEYILYNKGIMGEDSYPYIGKNGQC 212
             G+  M  L+ Q+++DC    N   CQGG      E+    +G++ E    Y   NG+C
Sbjct: 268 RKGRWPMTQLSPQEIIDCNGKGN---CQGGEIGNVLEHAKI-QGLVEEGCNVYRATNGEC 323

Query: 213 KFNPEKAVA----------------FVKNVVNITLNDEAAMVEAVALYNPVSFAFEVTED 256
             NP                     +VK+   +   D+  ++  +    P++ A   T+ 
Sbjct: 324 --NPYHRCGSCWPNECFSLTNYTRYYVKDYGQVQGRDK--IMSEIKKGGPIACAIGATKK 379

Query: 257 F-MMYKSGVYSSNSCHKTPDKVNHAVLAVGYG-EQNGLLYWIVK 298
           F   Y  GVYS     K+  + NH +   G+G ++NG+ YWI +
Sbjct: 380 FEYEYVKGVYS----EKSDLESNHIISLTGWGVDENGVEYWIAR 419


>F15D4.4 CE28917   cysteine protease (HINXTON) TR:Q93512
           protein_id:CAB02487.1
          Length = 622

 Score = 75.1 bits (183), Expect = 6e-14
 Identities = 85/332 (25%), Positives = 130/332 (38%), Gaps = 51/332 (15%)

Query: 25  VNAIEKFH--------FTSWMKQHQKTYSSREYSHRLQVFANNWRKIQAHNQRNH----T 72
           ++ +EKF+        F S M       +++E   R  V++   +++  HN        +
Sbjct: 119 LSPLEKFNEAMNNDGAFKSLMDVINFNSTAKEGLKRFNVYSKVKKEVDEHNIMYELGMSS 178

Query: 73  FKMGLNQFSDMSFAEIKHKYLWSEPQNCSAT------KSNYLRGTGPYPSSMDWRKKGNV 126
           +KM  NQFS     E+    L  +    +AT       S   R T P   ++DWR     
Sbjct: 179 YKMSTNQFSVALDGEVAPLTLNLDALTPTATVIPATISSRKKRDTEP---TVDWRP---F 232

Query: 127 VSPVKNQGACGSCWTFSTTGALESAVAIASGKMMTLAEQQL------VDCAQNFNNHGCQ 180
           + P+ +Q  CG CW FS    +ES  AI      +L+ QQL      VD      N GC+
Sbjct: 233 LKPILDQSTCGGCWAFSMISMIESFFAIQGYNTSSLSVQQLLTCDTKVDSTYGLANVGCK 292

Query: 181 GGLPSQAFEYILYNKGIMGEDSYPYIGKNGQCK---FNPEKAVAFVKNVVNITLNDEAAM 237
           GG    A  Y L           P+  ++  C    F P      + +   I+ N  AA 
Sbjct: 293 GGYFQIAGSY-LEVSAARDASLIPFDLEDTSCDSSFFPPVVPTILLFDDGYISGNFTAAQ 351

Query: 238 -------VEAVALYNPVSFAFEVTEDFMMYKSGVYSSNSCHKTPDKVNHAVLAVGYGEQN 290
                  +E      P++       D   Y  GVY  + C      +NHAV+ VG+ +  
Sbjct: 352 LITMEQNIEDKVRKGPIAVGMAAGPDIYKYSEGVYDGD-CGTI---INHAVVIVGFTDD- 406

Query: 291 GLLYWIVKXXXXXXXXXXXYFLIER--GKNMC 320
              YWI++           YF ++R  GK+ C
Sbjct: 407 ---YWIIRNSWGASWGEAGYFRVKRTPGKDPC 435


>Y71H2AM.3 CE26272    (ST.LOUIS) protein_id:AAK29976.1
          Length = 716

 Score = 73.9 bits (180), Expect = 1e-13
 Identities = 52/176 (29%), Positives = 77/176 (43%), Gaps = 32/176 (18%)

Query: 92  YLWSEPQNCSATKSNYLRGTGPYPSSMDWRKKGNVVSPVKNQGACGSCWTFSTTGALESA 151
           + W  P+    T   +L          DWR KG +V PVK+QG C +   F+ + ++ES 
Sbjct: 70  FQWKTPKYTIQTTEEFL----------DWRDKG-IVGPVKDQGKCNASHAFAISSSIESM 118

Query: 152 VAIA-SGKMMTLAEQQLVDCAQNFNNHGCQGGLPSQAFEYILYNKGIMGEDSYPYIGKNG 210
            A A +G +++ +EQQL+DC  +    GC+      A  Y +++ GI  E  YPY GK  
Sbjct: 119 YAKATNGSLLSFSEQQLIDC-DDHGFKGCEEQPAINAVSYFIFH-GIETEADYPYAGKE- 175

Query: 211 QCKFNPEKAVAFVKNVVNITLNDEAAMVEAVALYNPVSFAFEVTEDFMMYKSGVYS 266
                            N  L++E    E V  Y P  F          YK G+Y+
Sbjct: 176 -----------------NGKLSNETQGKELVTNYGPAFFTMRAPPSLYDYKIGIYN 214


>C32B5.13 CE08521    (ST.LOUIS) TR:P91110 protein_id:AAB37968.1
          Length = 150

 Score = 71.6 bits (174), Expect = 6e-13
 Identities = 45/143 (31%), Positives = 73/143 (50%), Gaps = 10/143 (6%)

Query: 159 MMTLAEQQLVDCAQNFNNHGCQGGLPSQAFEYILYNKGIMGEDSYPYIGK-NGQCKFNPE 217
           +++ +EQQ++DC  NF +  CQ  + S  F   +   G++ E  YPY+GK N +CK++  
Sbjct: 10  VLSFSEQQIIDCG-NFTSP-CQENILSHEF---IKKNGVVTEADYPYVGKENEKCKYDEN 64

Query: 218 KAVAFVKNVVNITLNDEAAMVEAVALYNPVSFAFEVTEDFMMYKSGVYS--SNSCHKTPD 275
           K   +  N++ +    E  +   +  + P  F  +    F  YK+G+YS     C K  D
Sbjct: 65  KIKLWPTNMLLVGNLPETLLKLFIKEHGPGYFRMKAPPSFFNYKTGIYSPTQEECGKATD 124

Query: 276 KVNHAVLAVGYGEQNGLLYWIVK 298
               ++  VGYG + G  YWIVK
Sbjct: 125 A--RSLTIVGYGIEGGQNYWIVK 145


  Database: /data_2/jason/blastdb/wormpep62
    Posted date:  Sep 3, 2001  2:17 PM
  Number of letters in database: 8,813,425
  Number of sequences in database:  20,085
  
Lambda     K      H
   0.319    0.131    0.412 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5933049
Number of Sequences: 20085
Number of extensions: 243404
Number of successful extensions: 614
Number of sequences better than 1.0e-10: 17
Number of HSP's better than  0.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 568
Number of HSP's gapped (non-prelim): 17
length of query: 333
length of database: 8,813,425
effective HSP length: 46
effective length of query: 287
effective length of database: 7,889,515
effective search space: 2264290805
effective search space used: 2264290805
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 155 (64.3 bits)
BLASTP 2.1.3 [Apr-11-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= CATL_HUMAN
         (333 letters)

Database: /data_2/jason/blastdb/wormpep62
           20,085 sequences; 8,813,425 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

T03E6.7 CE16333   cathepsin-like protease (HINXTON) TR:O4573...   334  4e-92
F41E6.6 CE10254   cysteine protease and a protease inhibitor...   194  6e-50
R09F10.1 CE28755   peptidase (ST.LOUIS) TR:Q23030 protein_id...   176  2e-44
Y40H7A.10 CE21821   Cysteine protease (HINXTON) TR:Q9XWA4 pr...   133  1e-31
R07E3.1 CE02295   cysteine proteinase (HINXTON) TR:Q21810 pr...   130  1e-30

>T03E6.7 CE16333   cathepsin-like protease (HINXTON) TR:O45734
           protein_id:CAB07275.1
          Length = 337

 Score =  334 bits (857), Expect = 4e-92
 Identities = 164/341 (48%), Positives = 228/341 (66%), Gaps = 12/341 (3%)

Query: 1   MNPTLILAAFCLGIASATLTFDHSLEA---QWTKWKAMHNRLYGMNEEGWRRAVWEKNMK 57
           MN  ++LA     +A  +      +E+   +W  +K   ++ Y  +EE      + KNM 
Sbjct: 1   MNRFILLALVAAVVAVNSAKLSRQIESAIEKWDDYKEDFDKEYSESEEQTYMEAFVKNMI 60

Query: 58  MIELHNQEYREGKHSFTMAMNAFGDMTSEEFRQVMNGFQ----NRKPRKGKVFQEPLFYE 113
            IE HN+++R G+ +F M +N   D+   ++R+ +NG++    + + +    F  P   +
Sbjct: 61  HIENHNRDHRLGRKTFEMGLNHIADLPFSQYRK-LNGYRRLFGDSRIKNSSSFLAPFNVQ 119

Query: 114 APRSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQ 173
            P  VDWR+   VT VKNQG CGSCWAFSATGALEGQ  RK G+L+SLSEQNLVDCS   
Sbjct: 120 VPDEVDWRDTHLVTDVKNQGMCGSCWAFSATGALEGQHARKLGQLVSLSEQNLVDCSTKY 179

Query: 174 GNEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCKYNPKYSVANDTGFVDIPK-QE 232
           GN GCNGGLMD AF+Y++DN G+D+EESYPY+  +  C +N K   A+D G+VD P+  E
Sbjct: 180 GNHGCNGGLMDQAFEYIRDNHGVDTEESYPYKGRDMKCHFNKKTVGADDKGYVDTPEGDE 239

Query: 233 KALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDN 292
           + L  AVAT GPIS+AIDAGH SF  YK+G+Y++ +CSSE++DHGVL+VGYG   T+ ++
Sbjct: 240 EQLKIAVATQGPISIAIDAGHRSFQLYKKGVYYDEECSSEELDHGVLLVGYG---TDPEH 296

Query: 293 NKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASYPTV 333
             YW+VKNSWG  WG  GY+++A++R NHCG+A+ ASYP V
Sbjct: 297 GDYWIVKNSWGAGWGEKGYIRIARNRNNHCGVATKASYPLV 337


>F41E6.6 CE10254   cysteine protease and a protease inhibitor (ST.LOUIS)
           TR:O16454 protein_id:AAB65956.1
          Length = 498

 Score =  194 bits (493), Expect = 6e-50
 Identities = 124/330 (37%), Positives = 171/330 (51%), Gaps = 53/330 (16%)

Query: 36  HNRLYGMNEEGWRR-AVWEKNMKMI-ELHNQEYREGKHSFTMAMNAFGDMTSEEFRQVMN 93
           H + Y    E  +R  V++KN K+I EL   E     + FT     F DMT+ EF+++M 
Sbjct: 181 HEKKYTNKREVLKRFRVFKKNAKVIRELQKNEQGTAVYGFTK----FSDMTTMEFKKIML 236

Query: 94  GFQNRKP-----------RKGKVFQEPLFYEAPRSVDWREKGYVTPVKNQGQCGSCWAFS 142
            +Q  +P               + +E L    P S DWREKG VT VKNQG CGSCWAFS
Sbjct: 237 PYQWEQPVYPMEQANFEKHDVTINEEDL----PESFDWREKGAVTQVKNQGNCGSCWAFS 292

Query: 143 ATGALEGQMFRKTGRLISLSEQNLVDCSGPQGNEGCNGGLMDYAFQ----YVQDN----- 193
            TG +EG  F    +L+SLSEQ LVDC     ++GCNGGL   A++     V DN     
Sbjct: 293 TTGNVEGAWFIAKNKLVSLSEQELVDCDSM--DQGCNGGLPSNAYKIGKFVVSDNYCFLV 350

Query: 194 ------------GGLDSEESYPYEATEESCKYNPKYSVANDTGFVDIPKQEKALMKAVAT 241
                       GGL+ E++YPY+   E+C    K       G V++P  E  + K + T
Sbjct: 351 FYHKTTKEIIRMGGLEPEDAYPYDGRGETCHLVRKDIAVYINGSVELPHDEVEMQKWLVT 410

Query: 242 VGPISVAIDAGHESFLFYKEGIY--FEPDCSSEDMDHGVLVVGYGFESTESDNNKYWLVK 299
            GPIS+ ++A   +  FY+ G+   F+  C    ++HGVL+VGYG    +     YW+VK
Sbjct: 411 KGPISIGLNA--NTLQFYRHGVVHPFKIFCEPFMLNHGVLIVGYG----KDGRKPYWIVK 464

Query: 300 NSWGEEWGMGGYVKMAKDRRNHCGIASAAS 329
           NSWG  WG  GY K+ +  +N CG+   A+
Sbjct: 465 NSWGPNWGEAGYFKLYRG-KNVCGVQEMAT 493


>R09F10.1 CE28755   peptidase (ST.LOUIS) TR:Q23030 protein_id:AAC69091.2
          Length = 383

 Score =  176 bits (446), Expect = 2e-44
 Identities = 113/309 (36%), Positives = 171/309 (54%), Gaps = 39/309 (12%)

Query: 42  MNEEGWRRAVWEKNMKMIELHNQEYREGKHSFTMAMNAFGDMTSEEFRQVMNGFQNRKPR 101
           + E  +R  ++ +N+  IE   +E R       + +N F D T EE ++++   Q  K  
Sbjct: 96  VEEFEYRYQIFLRNV--IEFEAEEERN--LGLDLDVNEFTDWTDEELQKMV---QENKYT 148

Query: 102 KGKVFQEPLFYEA--------PRSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFR 153
           K   F  P F  +        P S+DWRE+G +TP+KNQGQCGSCWAF+   ++E Q   
Sbjct: 149 KYD-FDTPKFEGSYLETGVIRPASIDWREQGKLTPIKNQGQCGSCWAFATVASVEAQNAI 207

Query: 154 KTGRLISLSEQNLVDCSGPQGNEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCKY 213
           K G+L+SLSEQ +VDC G   N GC+GG   YA ++V++N GL+SE+ YPY A     K+
Sbjct: 208 KKGKLVSLSEQEMVDCDG--RNNGCSGGYRPYAMKFVKEN-GLESEKEYPYSA----LKH 260

Query: 214 NPKYSVANDTG-FVD----IPKQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEP- 267
           +  +   NDT  F+D    +   E+ +   V T GP++  ++   ++   Y+ GI F P 
Sbjct: 261 DQCFLKENDTRVFIDDFRMLSNNEEDIANWVGTKGPVTFGMNV-VKAMYSYRSGI-FNPS 318

Query: 268 --DCSSEDMD-HGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGI 324
             DC+ + M  H + ++GYG E      + YW+VKNSWG  WG  GY ++A+   N CG+
Sbjct: 319 VEDCTEKSMGAHALTIIGYGGEG----ESAYWIVKNSWGTSWGASGYFRLARG-VNSCGL 373

Query: 325 ASAASYPTV 333
           A+    P +
Sbjct: 374 ANTVVAPII 382


>Y40H7A.10 CE21821   Cysteine protease (HINXTON) TR:Q9XWA4
           protein_id:CAA22062.1
          Length = 343

 Score =  133 bits (335), Expect = 1e-31
 Identities = 91/284 (32%), Positives = 146/284 (51%), Gaps = 28/284 (9%)

Query: 48  RRAVWEKNMKMIELHNQEYREGKHSFTMAMNAFGDMTSEEFRQVMNGFQNRKPRKGKVFQ 107
           R  ++ +N+ ++E +N+E   GK   T  +N F D+T EE+++ +      KP   +   
Sbjct: 71  RFTIFSRNLDLVERYNKE-DAGK--VTYELNDFSDLTEEEWKKYL---MTPKPDHSEKSL 124

Query: 108 EPLFY----EAPRSVDWRE---KGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLIS 160
           +P         P SVDWR      +VT +K QG CGSCWAF+   A+E  +    G L S
Sbjct: 125 KPKTLIDKKNLPNSVDWRNVNGTNHVTGIKYQGPCGSCWAFATAAAIESAVSISGGGLQS 184

Query: 161 LSEQNLVDCSGPQGNEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCKYNPKYSVA 220
           LS Q L+DC+    ++ C GG    A +Y Q + G+ +  +YPY      C+     +VA
Sbjct: 185 LSSQQLLDCT--VVSDKCGGGEPVEALKYAQSH-GITTAHNYPYYFWTTKCRETVP-TVA 240

Query: 221 NDTGFVDIPKQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLV 280
             + ++   + E  + + VA  GP+ V  +       FY  GI  +PDC +E   H ++V
Sbjct: 241 RISSWMK-AESEDEMAQIVALNGPMIVCANFATNKNRFYHSGIAEDPDCGTEP-THALIV 298

Query: 281 VGYGFESTESDNNKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGI 324
           +GYG +        YW++KN++ + WG  GY+++ +D  N CGI
Sbjct: 299 IGYGPD--------YWILKNTYSKVWGEKGYMRVKRD-VNWCGI 333


>R07E3.1 CE02295   cysteine proteinase (HINXTON) TR:Q21810
           protein_id:CAA89070.1
          Length = 402

 Score =  130 bits (327), Expect = 1e-30
 Identities = 89/265 (33%), Positives = 130/265 (48%), Gaps = 27/265 (10%)

Query: 78  NAFGDMTSEEFRQVM--NGFQNRKPRKGKVFQEPLFYEA-----------PRSVDWREKG 124
           N   D T EEF + +    F  R  ++ + F EP+               P   DWR+K 
Sbjct: 138 NDMSDWTDEEFEKTLLPKSFYKRLHKEAE-FIEPIPESLTAKKGESSSPFPDFFDWRDKN 196

Query: 125 YVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQGNEGCNGGLMD 184
            +TPVK QGQCGSCWAF++T  +E       G   +LSEQ L+DC     +  C+GG  D
Sbjct: 197 VITPVKAQGQCGSCWAFASTATVEAAWAIAHGEKRNLSEQTLLDCD--LVDNACDGGDED 254

Query: 185 YAFQYVQDNGGLDSEESYPYEA-TEESCKYNPKYSVANDTGFVDIPKQEKALMKAVATVG 243
            AF+Y+  N GL +    PY A  +  C  N  ++         +   E +++  +   G
Sbjct: 255 KAFRYIHRN-GLANAVDLPYVAHRQNGCAVNDHWNTTRIKAAYFLHHDEDSIINWLVNFG 313

Query: 244 PISVAIDAGHESFLFYKEGIY--FEPDCSSEDMD-HGVLVVGYGFESTESDNNKYWLVKN 300
           P+++ + A  +    YK G++   E  C +E +  H +L+ GYG   T     KYW+VKN
Sbjct: 314 PVNIGM-AVIQPMRAYKGGVFTPSEYACKNEVIGLHALLITGYG---TSKTGEKYWIVKN 369

Query: 301 SWGEEWGM-GGYVKMAKDRRNHCGI 324
           SWG  WG+  GY+  A+   N CGI
Sbjct: 370 SWGNTWGVEHGYIYFARG-INACGI 393


>Y51A2D.8 CE19204   Cysteine proteases (2 domains) (HINXTON) TR:Q9XXQ7
           protein_id:CAA16407.1
          Length = 386

 Score =  123 bits (308), Expect = 2e-28
 Identities = 87/322 (27%), Positives = 145/322 (45%), Gaps = 39/322 (12%)

Query: 32  WKAMHNRLYGMNEEGWRRAV-WEKNMKMIELHNQEYREGKHSFTMAMNAFGDMTSEEFRQ 90
           +K  +NR Y    E  +R   + K+   ++  N + +   +     +N F D+++ EF  
Sbjct: 46  FKKKYNRKYKDESENQQRFNNFVKSYNNVDKLNAKSKAAGYDTQFGINKFSDLSTAEFHG 105

Query: 91  VMNG-------------FQNRKP-----------RKGKVFQEPLFYEAPRSVDWREKGYV 126
            ++              F  +KP            K +  + P +++  R+     +  V
Sbjct: 106 RLSNVVPSNNTGLPMLNFDKKKPDFRAADMNKTRHKRRSTRYPDYFDL-RNEKINGRYIV 164

Query: 127 TPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQGNEGCNGGLMDYA 186
            P+K+QGQC  CW F+ T  +E      +G+  SLS+Q + DC G +G  GC GG +   
Sbjct: 165 GPIKDQGQCACCWGFAVTALVETVYAAHSGKFKSLSDQEVCDC-GTEGTPGCKGGSLTLG 223

Query: 187 FQYVQDNGGLDSEESYPYEATEES----CKYNPKYSVANDTGF---VDIPKQEKALMKAV 239
            QYV+   GL  +E YPY+    +    C+      +     F   V  P++ +  +  V
Sbjct: 224 VQYVK-KYGLSGDEDYPYDQNRANQGRRCRLRETDRIVPARAFNFAVINPRRAEEQIIQV 282

Query: 240 ATVG--PISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYG-FESTESDNNKYW 296
            T    P++V    G + F  YKEG+  E DC      H   +VGY   E +   ++ YW
Sbjct: 283 LTEWKVPVAVYFKVG-DQFKEYKEGVIIEDDCRRATQWHAGAIVGYDTVEDSRGRSHDYW 341

Query: 297 LVKNSWGEEWGMGGYVKMAKDR 318
           ++KNSWG +W   GYV++ + R
Sbjct: 342 IIKNSWGGDWAESGYVRVVRGR 363


>K02E7.10 CE11640   protease (ST.LOUIS) TR:O17255 protein_id:AAB71030.1
          Length = 299

 Score =  119 bits (298), Expect = 3e-27
 Identities = 73/219 (33%), Positives = 112/219 (50%), Gaps = 14/219 (6%)

Query: 118 VDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFR-KTGRLISLSEQNLVDCSGPQGNE 176
           +DWREKG V PVK+QG+C + +AF+A  A+E    +   G+L+S SEQ ++DC+      
Sbjct: 84  LDWREKGIVGPVKDQGKCNASYAFAAIAAIESMYAKANNGKLLSFSEQQIIDCA--NFTN 141

Query: 177 GCNGGLMDYAFQYVQDNGGLDSEESYPYEATEE--SCKYNPKYSVANDTGFVDIPKQEKA 234
            C   L +          G+ +E  YPY   E    C+Y+        T ++D+   E+ 
Sbjct: 142 PCQENLENVLSNRFLKENGVGTEADYPYVGKENVGKCEYDSSKMKLRPT-YIDVYPNEEW 200

Query: 235 LMKAVATVGPISVAIDAGHESFLFYKEGIY--FEPDCSSEDMDHGVLVVGYGFESTESDN 292
               + T G     +     SF  YK GIY   + +C + +    + +VGYG +  E   
Sbjct: 201 ARAHITTFGTGYFRM-RSPPSFFHYKTGIYNPTKEECGNANEARSLAIVGYGKDGAE--- 256

Query: 293 NKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASYP 331
            KYW+VK S+G  WG  GY+K+A++  N CG+A + S P
Sbjct: 257 -KYWIVKGSFGTSWGEHGYMKLARN-VNACGMAESISIP 293


>Y71H2AR.2 CE22930    (ST.LOUIS) protein_id:AAK29985.1
          Length = 345

 Score =  119 bits (297), Expect = 3e-27
 Identities = 79/219 (36%), Positives = 115/219 (52%), Gaps = 12/219 (5%)

Query: 118 VDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKT-GRLISLSEQNLVDCSGPQGNE 176
           +DWREKG V PVK+QG+C +  AF+ T ++E    + T G L+S SEQ L+DC+  QG +
Sbjct: 86  LDWREKGIVGPVKDQGKCNASHAFAITSSIESMYAKATNGTLLSFSEQQLIDCN-DQGYK 144

Query: 177 GCNGGLMDYAFQYVQDNGGLDSEESYPY-EATEESCKYNPKYSVANDTGFVDIPKQEKAL 235
           GC       A  Y+  + G+++E  YPY + T E C ++   S  +    V     E   
Sbjct: 145 GCEEQFAMNAIGYLATH-GIETEADYPYVDKTNEKCTFDSTKSKIHLKKGVVAEGNEVLG 203

Query: 236 MKAVATVGPISVAIDAGHESFLFYKEGIYFE--PDCSSEDMDHGVLVVGYGFESTESDNN 293
              V   GP    + A   S   YK GIY     +C+S      +++VGYG E  +    
Sbjct: 204 KVYVTNYGPAFFTMRA-PPSLYDYKIGIYNPSIEECTSTHEIRSMVIVGYGIEGEQ---- 258

Query: 294 KYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIASAASYPT 332
           KYW+VK S+G  WG  GY+K+A+D  N C +A+  +  T
Sbjct: 259 KYWIVKGSFGTSWGEQGYMKLARD-VNACAMATTIAVLT 296


>Y51A2D.1 CE18411   Cysteine proteases (2 domains) (HINXTON) TR:O62484
           protein_id:CAA16404.1
          Length = 382

 Score =  105 bits (262), Expect = 4e-23
 Identities = 95/353 (26%), Positives = 148/353 (41%), Gaps = 76/353 (21%)

Query: 28  QWTKWKAMHNRLYGMNEEGWRRA---VWEKNMKMIELHNQEYREGKHSFTMAMNAFGDMT 84
           ++ ++K   +R Y    E   R    V  +N  ++ L+    + G++S   A+N F D+T
Sbjct: 43  EFVEFKKKFSRTYKSEAENQLRLQNFVKSRN-NVVRLNKNAQKAGRNS-NFAVNQFSDLT 100

Query: 85  SEEFRQVMNGF-----------QNRKPRKGKVFQEPLFYEAPRSVDWREKGY-----VTP 128
           + E  Q ++ F           +N K   GK   +    E  R+ D R +       V P
Sbjct: 101 TSELHQRLSRFPPNLTENSVFHKNFKKLLGKTRTKRQNSEFARNFDLRSQKVNGRYIVGP 160

Query: 129 VKNQGQCGSCWAFSATGALEG------------------------------QMFRKTGRL 158
           +KNQGQC  CW F+ T  LE                               +   K    
Sbjct: 161 IKNQGQCACCWGFAVTAMLETIYAVNVGRFKLMSHIPALAPNFSDFDFFFFEFLAKLNMF 220

Query: 159 ISLSEQNLVDCSGPQGNEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCKYNPKYS 218
           +S S+Q + DC+      GC GG + +  +Y  +N GL SE  YP      + +     +
Sbjct: 221 LSFSDQEMCDCATDGTKAGCAGGGLMWGVEYAINN-GLASEFDYPEFDQNRATRPGTCEA 279

Query: 219 VANDTGFVDIPKQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCS-SEDMDHG 277
           + +D                  T  P++ A  AG  +FL YK G+    DC  +  + H 
Sbjct: 280 MDDD-----------------KTFPPVNFA--AG-TAFLQYKSGVLVTEDCDLAGTVWHA 319

Query: 278 VLVVGYGFES-TESDNNKYWLVKNSWG-EEWGMGGYVKMAKDRRNHCGIASAA 328
             +VGYG E+     + ++W++KNSWG   WG GGYVK+ +  +N CGI   A
Sbjct: 320 GAIVGYGEENDLRGRSQRFWIMKNSWGVSGWGTGGYVKLIRG-KNWCGIERGA 371


>F26E4.3 CE17714   cysteine protease (HINXTON) TR:P90850
           protein_id:CAB03007.1
          Length = 491

 Score =  100 bits (250), Expect = 1e-21
 Identities = 73/245 (29%), Positives = 110/245 (44%), Gaps = 35/245 (14%)

Query: 113 EAPRSVDWREKG--YVTPVKNQGQCGSCWAFSATGALEGQM-FRKTGRLIS-LSEQNLVD 168
           E P   D R+K    + PV +QG CGS W+ S T     ++     GR+ S LS Q L+ 
Sbjct: 222 ELPEHFDARDKWGPLIHPVADQGDCGSSWSVSTTAISSDRLAIISEGRINSTLSSQQLLS 281

Query: 169 CSGPQGNEGCNGGLMDYAFQYVQDNGGLDSEESYPY---EATEESCKYNPKYSVANDTGF 225
           C+  +  +GC GG +D A+ Y++  G +  +  YPY   ++ E      PK    N  G 
Sbjct: 282 CNQHR-QKGCEGGYLDRAWWYIRKLGVV-GDHCYPYVSGQSREPGHCLIPKRDYTNRQGL 339

Query: 226 -----------------VDIPKQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPD 268
                              +  +E+ +   + T GP+       HE F  Y  G+Y   D
Sbjct: 340 RCPSGSQDSTAFKMTPPYKVSSREEDIQTELMTNGPVQATFVV-HEDFFMYAGGVYQHSD 398

Query: 269 CSSE-------DMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYVKMAKDRRNH 321
            +++       +  H V V+G+G + +     KYWL  NSWG +WG  GY K+ +   NH
Sbjct: 399 LAAQKGASSVAEGYHSVRVLGWGVDHSTGKPIKYWLCANSWGTQWGEDGYFKVLRG-ENH 457

Query: 322 CGIAS 326
           C I S
Sbjct: 458 CEIES 462


>Y113G7B.15 CE23295    (HINXTON) TR:Q9U2X1 protein_id:CAB54334.1
          Length = 328

 Score =  100 bits (248), Expect = 2e-21
 Identities = 92/317 (29%), Positives = 130/317 (40%), Gaps = 37/317 (11%)

Query: 44  EEGWRRAVWEKNMKMIELHNQEYREGKHSFTMAMNAFGDMTSEEFRQVMNG--------- 94
           E+  R A + KN + I+  N + R    + T   N F D   +E     +          
Sbjct: 12  EKDRRLAHFAKNHQKIQELNAKARREGRNVTFGWNKFADKNRQELSARNSKIHPKNHTDL 71

Query: 95  --FQNRKPRKGKVFQEPLFY----EAPRSVDWRE-----KGYVTPVKNQGQCGSCWAFSA 143
             ++ R PR  +            + P   D R+        V PVK+Q QCG CWAF+ 
Sbjct: 72  PIYKPRHPRGSRNHHNKRSKRQSGDIPDYFDLRDIYVDGSPVVGPVKDQEQCGCCWAFAT 131

Query: 144 TGALEGQMFRKTGRLISLSEQNLVDCSGPQGNEGCNGGLMDYAFQYVQDNGGLDSEESYP 203
           T   E      +    SLS+Q + DC+      GC GG      + V    G  S+  YP
Sbjct: 132 TAITEAANTLYSKSFTSLSDQEICDCADSGDTPGCVGGDPRNGLKMVHLR-GQSSDGDYP 190

Query: 204 YEA----TEESCKYNPKYSV-----ANDTGFVDIPKQEKALMKAVATVGPISVAIDAGHE 254
           YE     T  +C  + K +V      N   F     +E  +        P +V    G E
Sbjct: 191 YEEYRANTTGNCVGDEKSTVIQPETLNVYRFDQDYAEEDIMENLYLNHIPTAVYFRVG-E 249

Query: 255 SFLFYKEGIYFEPDC--SSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYV 312
           +F +Y  G+    DC   +    H V +VGYG   T  D   YWLV+NSW  +WG+ GYV
Sbjct: 250 NFEWYTSGVLQSEDCYQMTPAEWHSVAIVGYG---TSDDGVPYWLVRNSWNSDWGLHGYV 306

Query: 313 KMAKDRRNHCGIASAAS 329
           K+ +   N C I S A+
Sbjct: 307 KIRRG-VNWCLIESHAA 322


>F15D4.4 CE28917   cysteine protease (HINXTON) TR:Q93512
           protein_id:CAB02487.1
          Length = 622

 Score = 97.8 bits (242), Expect = 8e-21
 Identities = 77/296 (26%), Positives = 127/296 (42%), Gaps = 39/296 (13%)

Query: 44  EEGWRRA-VWEKNMKMIELHNQEYREGKHSFTMAMNAFGDMTSEEFRQVMNGFQNRKPRK 102
           +EG +R  V+ K  K ++ HN  Y  G  S+ M+ N F      E   +        P  
Sbjct: 149 KEGLKRFNVYSKVKKEVDEHNIMYELGMSSYKMSTNQFSVALDGEVAPLTLNLDALTPTA 208

Query: 103 GKV---FQEPLFYEAPRSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLI 159
             +          +   +VDWR   ++ P+ +Q  CG CWAFS    +E     +     
Sbjct: 209 TVIPATISSRKKRDTEPTVDWRP--FLKPILDQSTCGGCWAFSMISMIESFFAIQGYNTS 266

Query: 160 SLSEQNLVDCSGP------QGNEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCK- 212
           SLS Q L+ C           N GC GG    A  Y++ +   D+    P++  + SC  
Sbjct: 267 SLSVQQLLTCDTKVDSTYGLANVGCKGGYFQIAGSYLEVSAARDA-SLIPFDLEDTSCDS 325

Query: 213 ------------YNPKYSVANDTGFVDIPKQEKALMKAVATVGPISVAIDAGHESFLFYK 260
                       ++  Y   N T    I  ++   ++     GPI+V + AG + +  Y 
Sbjct: 326 SFFPPVVPTILLFDDGYISGNFTAAQLITMEQN--IEDKVRKGPIAVGMAAGPDIYK-YS 382

Query: 261 EGIYFEPDCSSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYVKMAK 316
           EG+Y + DC +  ++H V++VG+         + YW+++NSWG  WG  GY ++ +
Sbjct: 383 EGVY-DGDCGT-IINHAVVIVGF--------TDDYWIIRNSWGASWGEAGYFRVKR 428


>C50F4.3 CE05468   thiol protease (HINXTON) TR:Q18740 protein_id:CAA94738.1
          Length = 374

 Score = 94.4 bits (233), Expect = 9e-20
 Identities = 80/292 (27%), Positives = 125/292 (42%), Gaps = 36/292 (12%)

Query: 63  NQEYREGKHSFTMAMNAFGDMTSEEFRQVMNGFQ-----------NRKPRKGKVFQEPLF 111
           N+  ++  H     +N F D++ +E   + + F            N K  + K   E L 
Sbjct: 82  NKAAKKAGHDTKYGINKFSDLSKKEIHGMYSKFGPPKNNTNVPKFNLKNLRVKRQMEGL- 140

Query: 112 YEAPRSVDWREKGY-----VTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNL 166
              P++ D R K       + P+K Q  C  CW F+AT   E  +     + ++LSEQ +
Sbjct: 141 ---PKTFDLRNKKVGGHYIIGPIKTQDSCACCWGFAATAVAEAALTVHLKKAMNLSEQEV 197

Query: 167 VDCSGPQGNEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATE-------ESCKYNPKYS- 218
            DC+ P+   GCNGG      +Y+++  GL   + YP+           ES KY+ + + 
Sbjct: 198 CDCA-PKHGPGCNGGDPVDGLEYIKEM-GLTGGKEYPFNVNRSTQLGRCESEKYDRELNP 255

Query: 219 VANDTGFVDIPKQEKALMKAVATVG-PISVAIDAGHESFLFYKEGIYFEPDCSSEDMD-- 275
           +  D   +D    E  +   +  +  PISVA   G  S   Y  GI    DC  E     
Sbjct: 256 LELDYYAIDPFNAEYQMTHHLYLLNLPISVAFRTG-ASLSSYLSGILELADCDDEKGGHW 314

Query: 276 HGVLVVGYGFESTESDNN-KYWLVKNSWGEEWGMGGYVKMAKDRRNHCGIAS 326
           H   +VGYG     +     YW+ +NSW  +WG  GY ++ +   + C I S
Sbjct: 315 HSGAIVGYGTTKNSAGRTVDYWIFRNSWWTDWGDDGYARIVRG-EDWCSIES 365


>C32B5.7 CE08515   cathepsin-like peptidase (ST.LOUIS) TR:P91111
           protein_id:AAB37963.1
          Length = 250

 Score = 94.0 bits (232), Expect = 1e-19
 Identities = 63/191 (32%), Positives = 100/191 (51%), Gaps = 18/191 (9%)

Query: 118 VDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLISLSEQNLVDCSGPQGNEG 177
           +DWR++G V PVK+QG C + +AF+A  A+E       G+L+S SEQ ++DC G    E 
Sbjct: 72  LDWRDEGVVGPVKDQGNCNASYAFAAISAIESMYAIANGQLLSFSEQQIIDCLGGCAIES 131

Query: 178 CNGGLMDYAFQYVQDNGGLDSEESYPYEATE-ESCKYNPK--YSVANDTGFVDIPKQEKA 234
                M Y      +  G+++   YP+   + E C+Y+ K  Y + +DT   D+  +  A
Sbjct: 132 DPMMAMTYL-----ERKGIETYTDYPFVGKKNEKCEYDSKKAYLILDDT--YDMSDESLA 184

Query: 235 LMKAVATVGPISVAIDAGHESFLFYKEGIY--FEPDCSSEDMDHGVLVVGYGFESTESDN 292
           L+  +   GP    ++    SF  YK GIY   E +C S +    + +VGYG +  ++  
Sbjct: 185 LV-FIDERGPGLFTMNT-PPSFFNYKSGIYNPTEEECKSTNEKRALTIVGYGNDKGQN-- 240

Query: 293 NKYWLVKNSWG 303
             YW+VK S+G
Sbjct: 241 --YWIVKGSFG 249


>M04G12.2 CE12424   cysteine protease (HINXTON) TR:P92005
           protein_id:CAB03209.1
          Length = 467

 Score = 92.0 bits (227), Expect = 4e-19
 Identities = 82/288 (28%), Positives = 133/288 (45%), Gaps = 45/288 (15%)

Query: 66  YREGKHSFTMAMNAFGDMTSEEFRQVMNGFQNRKPRK-GKVFQE---PLFYEA------- 114
           Y E      + M++  + +SEE+ +     +    +K GKVF+    P  +E+       
Sbjct: 161 YYEPNDEALVDMSSESEESSEEWEEARPYLKCGCLKKSGKVFESKTAPREWESSSFKSND 220

Query: 115 -PRSVDWREKG---YVTPVKNQG---QCGSCWAFSATGALEGQM-FRKTGR--LISLSEQ 164
            P   DWR      Y +P +NQ     CGSCW F  TGAL  +    + GR  +  LS Q
Sbjct: 221 LPTGWDWRNVSGVNYCSPTRNQHIPVYCGSCWVFGTTGALNDRFNVARKGRWPMTQLSPQ 280

Query: 165 NLVDCSGPQGNEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEE---------SCKYNP 215
            ++DC+G +GN  C GG +    ++ +  G L  E    Y AT           SC  N 
Sbjct: 281 EIIDCNG-KGN--CQGGEIGNVLEHAKIQG-LVEEGCNVYRATNGECNPYHRCGSCWPNE 336

Query: 216 KYSVANDTGFV-----DIPKQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCS 270
            +S+ N T +       +  ++K +M  +   GPI+ AI A  +    Y +G+Y E   S
Sbjct: 337 CFSLTNYTRYYVKDYGQVQGRDK-IMSEIKKGGPIACAIGATKKFEYEYVKGVYSEK--S 393

Query: 271 SEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYVKMAKDR 318
             + +H + + G+G    + +  +YW+ +NSWGE WG  G+ ++   +
Sbjct: 394 DLESNHIISLTGWG---VDENGVEYWIARNSWGEAWGELGWFRVVTSK 438


>C52E4.1 CE08943  locus:cpr-1 cathepsin-like cysteine protease (HINXTON)
           TR:Q18783 protein_id:CAB01410.1
          Length = 340

 Score = 88.6 bits (218), Expect = 5e-18
 Identities = 66/251 (26%), Positives = 104/251 (41%), Gaps = 37/251 (14%)

Query: 107 QEPLFYEAPRSVD----WREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKT--GRLIS 160
           QE +    P + D    W E   +  +++Q  CGSCWAF A   +  +   +T   +   
Sbjct: 89  QEVVLASVPATFDSRTQWSECKSIKLIRDQATCGSCWAFGAAEMISDRTCIETKGAQQPI 148

Query: 161 LSEQNLVDCSGPQGNEGCNGGLMDYAFQYVQDNGGLDSEESY-----PYE---------- 205
           +S  +L+ C G     GC GG    A ++    G +   + +     PY           
Sbjct: 149 ISPDDLLSCCGSSCGNGCEGGYPIQALRWWDSKGVVTGGDYHGAGCKPYPIAPCTSGNCP 208

Query: 206 -----ATEESCKYNPKYSVANDTGF----VDIPKQEKALMKAVATVGPISVAIDAGHESF 256
                +   SC+     + A D  F      +PK   ++   +   GP+  A    +E F
Sbjct: 209 ESKTPSCSMSCQSGYSTAYAKDKHFGVSAYAVPKNAASIQAEIYANGPVEAAFSV-YEDF 267

Query: 257 LFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYVKMAK 316
             YK G+Y +         H + ++G+G ES     + YWLV NSWG  WG  G+ K+ +
Sbjct: 268 YKYKSGVY-KHTAGKYLGGHAIKIIGWGTES----GSPYWLVANSWGVNWGESGFFKIYR 322

Query: 317 DRRNHCGIASA 327
              + CGI SA
Sbjct: 323 G-DDQCGIESA 332


>F32B5.8 CE09855   cysteine proteinase (ST.LOUIS) TR:O01850
           protein_id:AAB54210.1
          Length = 427

 Score = 88.2 bits (217), Expect = 6e-18
 Identities = 85/288 (29%), Positives = 130/288 (44%), Gaps = 54/288 (18%)

Query: 75  MAMNAFGDMTSEEFRQVMNGFQNRKPRKGKVFQEPLF---YEA--------PRSVDWREK 123
           +A +A+G +     R   N  +    + G+VF+   +   YE         P++ DWR+ 
Sbjct: 137 LASSAYGKVRKYSNRNRYN-LKGCYKQTGRVFEHKRYDRIYETEDFDSEDLPKTWDWRDA 195

Query: 124 G---YVTPVKNQG---QCGSCWAFSATGALEGQMFRKTGRL---ISLSEQNLVDCSGP-- 172
               Y +  +NQ     CGSCWAF AT AL  ++  K         LS Q ++DCSG   
Sbjct: 196 NGINYASADRNQHIPQYCGSCWAFGATSALADRINIKRKNAWPQAYLSVQEVIDCSGAGT 255

Query: 173 --QGNEGCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCK-YN-------------PK 216
              G E   GG+  YA ++     G+  E    Y+A +  C  YN               
Sbjct: 256 CVMGGEP--GGVYKYAHEH-----GIPHETCNNYQARDGKCDPYNRCGSCWPGECFSIKN 308

Query: 217 YSVANDTGFVDIPKQEKALMKA-VATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMD 275
           Y++   + +  +   EK  MKA +   GPI+  I A  ++F  Y  GIY E   + ED+D
Sbjct: 309 YTLYKVSEYGTVHGYEK--MKAEIYHKGPIACGI-AATKAFETYAGGIYKE--VTDEDID 363

Query: 276 HGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYVKMAKDRRNHCG 323
           H + V G+G +       +YW+ +NSWGE WG  G+ K+   +  + G
Sbjct: 364 HIISVHGWGVD--HESGVEYWIGRNSWGEPWGEHGWFKIVTSQYKNAG 409


>F57F5.1 CE05999   cysteine protease (HINXTON) TR:Q20950
           protein_id:CAB00098.1
          Length = 400

 Score = 85.9 bits (211), Expect = 3e-17
 Identities = 72/280 (25%), Positives = 114/280 (40%), Gaps = 51/280 (18%)

Query: 89  RQVMNGFQNRKPRKGKVFQ--EPLFYEA--PRSVD----WREKGYVTPVKNQGQCGSCWA 140
           +Q+M       P + +VF+   P   +A  P S D    W     ++ +++Q  CGSCWA
Sbjct: 117 KQLMGAKMVEIPEEYRVFEMTHPEVEDAAVPDSFDSRTAWPNCPSISKIRDQSSCGSCWA 176

Query: 141 FSATGALEGQ--MFRKTGRLISLSEQNLVDCSGPQGNEGCNGGLMDYAFQY--------- 189
            SA   +  +  +      ++S+S  ++  C G     GCNGG    A+++         
Sbjct: 177 VSAAETISDRICIASNAKTILSISADDINACCGMVCGNGCNGGYPIEAWRHYVKKGYVTG 236

Query: 190 --VQDNGGLD-------------------SEESYPYEATEESCKYNPKYSVANDTGF--- 225
              QD  G                         YP +  E SC+     +   D  F   
Sbjct: 237 GSYQDKTGCKPYPYPPCEHHVNGTHYKPCPSNMYPTDKCERSCQAGYALTYQQDLHFGQS 296

Query: 226 -VDIPKQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYG 284
              + K+   + K + T GP+ VA    +E F  Y  G+Y     +S    H V ++G+G
Sbjct: 297 AYAVSKKAAEIQKEIMTHGPVEVAFTV-YEDFEHYSGGVYVHTAGASLG-GHAVKMLGWG 354

Query: 285 FESTESDNNKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGI 324
            +    +   YWL  NSW E+WG  GY ++ +   N CGI
Sbjct: 355 VD----NGTPYWLCANSWNEDWGENGYFRIIRG-VNECGI 389


>T10H4.12 CE27590  locus:cpr-3 protease (HINXTON) TR:Q9TW93
           protein_id:CAB61024.2
          Length = 370

 Score = 77.4 bits (189), Expect = 1e-14
 Identities = 80/345 (23%), Positives = 131/345 (37%), Gaps = 76/345 (22%)

Query: 12  LGIASATLTFDHSLEAQWTKWKAMHNRLYGMNEEGWRRAVWEKNMKMIELHNQEYREGKH 71
           +G +   +  DH    Q T W A HN +          + +E   K++++          
Sbjct: 27  IGQSPQKVLVDHVNTVQ-TSWVAEHNEI----------SEFEMKFKVMDV---------- 65

Query: 72  SFTMAMNAFGDMTSEEFRQVMNGFQNRKPRKGKVFQEPLFYEAPRSVDWREK----GYVT 127
            F   +    D+ SE F             +G++  EPL    P + D REK      + 
Sbjct: 66  KFAEPLEKDSDVASELFV------------RGEIVPEPL----PDTFDAREKWPDCNTIK 109

Query: 128 PVKNQGQCGSCWAFSATGALEGQMFRKTG--RLISLSEQNLVDCSGPQGNEGCNGGLMDY 185
            ++NQ  CGSCWAF A   +  ++  ++   +   +S ++++ C G     GC GG    
Sbjct: 110 LIRNQATCGSCWAFGAAEVISDRVCIQSNGTQQPVISVEDILSCCGTTCGYGCKGGYSIE 169

Query: 186 AFQYVQDNGGLDSEE-----SYPY----------EATEESCK-----------YNPKYSV 219
           A ++   +G +   +       PY          E+T  SCK           Y      
Sbjct: 170 ALRFWASSGAVTGGDYGGHGCMPYSFAPCTKNCPESTTPSCKTTCQSSYKTEEYKKDKHY 229

Query: 220 ANDTGFVDIPKQEKALMKAVATVGPISVAIDAGHESFLFYKEGIYFEPDCSSEDMDHGVL 279
                 V   K    +   +   GP+  +    +E F  YK G+Y           H V 
Sbjct: 230 GASAYKVTTTKSVTEIQTEIYHYGPVEASYKV-YEDFYHYKSGVYHYTSGKLVG-GHAVK 287

Query: 280 VVGYGFESTESDNNKYWLVKNSWGEEWGMGGYVKMAKDRRNHCGI 324
           ++G+G E    +   YWL+ NSWG  +G  G+ K+ +   N C I
Sbjct: 288 IIGWGVE----NGVDYWLIANSWGTSFGEKGFFKIRRG-TNECQI 327


>F36D3.9 CE15973   cysteine protease (HINXTON) TR:O45466
           protein_id:CAB04322.1
          Length = 345

 Score = 77.0 bits (188), Expect = 1e-14
 Identities = 65/245 (26%), Positives = 100/245 (40%), Gaps = 36/245 (14%)

Query: 109 PLFYEAPRSVDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLIS--LSEQNL 166
           PL ++A     W +   +  ++ Q  CGSCWAFS    +  +    +       +S  +L
Sbjct: 102 PLNFDA--RTRWPQCKSMKLIREQSNCGSCWAFSTAEVISDRTCIASNGTQQPIISPTDL 159

Query: 167 VDCSGPQGNEGCNGGLMDYAFQYVQDNGGLDSEE-------SYPYEATEE---------- 209
           + C G    EGC+GG    AFQ+    G +   +        YP                
Sbjct: 160 LTCCGMSCGEGCDGGFPYRAFQWWARRGVVTGGDYLGTGCKPYPIRPCNSDNCVNLQTPP 219

Query: 210 ---SCKYNPKYSVANDTGF-----VDIPKQEKALMKAVATVGPISVAIDAGHESFLFYKE 261
              SC+   + +  ND  +       +P+   A+   +   GP+ VA    +E F  YK 
Sbjct: 220 CRLSCQPGYRTTYTNDKNYGSNSAYPVPRTVAAIQADIYYNGPV-VAAFIVYEDFEKYKS 278

Query: 262 GIYFEPDCSSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYVKMAKDRRNH 321
           GIY      S+   H V ++G+G E        YWL  NSWG +WG  G  ++ +   + 
Sbjct: 279 GIYRHIAGRSKG-GHAVKLIGWGTER----GTPYWLAVNSWGSQWGESGTFRILRG-VDE 332

Query: 322 CGIAS 326
           CGI S
Sbjct: 333 CGIES 337


>C25B8.3 CE04078  locus:cpr-6  (ST.LOUIS) protein_id:AAK39189.1
          Length = 379

 Score = 77.0 bits (188), Expect = 1e-14
 Identities = 67/255 (26%), Positives = 106/255 (41%), Gaps = 49/255 (19%)

Query: 113 EAPRSVD----WREKGYVTPVKNQGQCGSCWAFSATGALEGQM-FRKTGRL-ISLSEQNL 166
           + P S D    W +   +  +++Q  CGSCWAF A  A+  ++     G L ++LS  +L
Sbjct: 104 DIPESFDSRDNWPKCDSIKVIRDQSSCGSCWAFGAVEAMSDRICIASHGELQVTLSADDL 163

Query: 167 VDCSGPQGNEGCNGGLMDYAFQYVQDNGGLDSE--------ESYPYEATEESCKYN---- 214
           + C    G  GCNGG    A++Y   +G +           + YP+   E   K      
Sbjct: 164 LSCCKSCGF-GCNGGDPLAAWRYWVKDGIVTGSNYTANNGCKPYPFPPCEHHSKKTHFDP 222

Query: 215 --------PKYSVANDTGFVDIPKQE---------------KALMKAVATVGPISVAIDA 251
                   PK      + + D    E               +A+ K + T GP+ +A + 
Sbjct: 223 CPHDLYPTPKCEKKCVSDYTDKTYSEDKFFGASAYGVKDDVEAIQKELMTHGPLEIAFEV 282

Query: 252 GHESFLFYKEGIYFEPDCSSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGY 311
            +E FL Y  G+Y           H V ++G+G +    D   YW V NSW  +WG  G+
Sbjct: 283 -YEDFLNYDGGVYVHTG-GKLGGGHAVKLIGWGID----DGIPYWTVANSWNTDWGEDGF 336

Query: 312 VKMAKDRRNHCGIAS 326
            ++ +   + CGI S
Sbjct: 337 FRILRG-VDECGIES 350


>W07B8.4 CE14680   thiol protease (ST.LOUIS) TR:O16288 protein_id:AAB65345.1
          Length = 335

 Score = 75.9 bits (185), Expect = 3e-14
 Identities = 66/249 (26%), Positives = 99/249 (39%), Gaps = 47/249 (18%)

Query: 120 WREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKTGRLIS--LSEQNLVDCSGPQGN-- 175
           W +   V  +++Q  CGSCWA +A  A+  +    +   ++  LS ++++ C   + N  
Sbjct: 83  WPQCISVNNIRDQSHCGSCWAVAAAEAISDRTCIASNGDVNTLLSAEDILTCCTGKFNCG 142

Query: 176 EGCNGGLMDYAFQYVQDNG---GLDSEESY---PYEAT---------------------- 207
           +GC GG    A++Y   NG   G   E  Y   PY                         
Sbjct: 143 DGCEGGYPIQAWRYWVKNGLVTGGSFESQYGCKPYSIAPCGETIDGVTWPECPMKISDTP 202

Query: 208 --EESCKYNPKYSVAND------TGFVDIPKQEKALMKAVATVGPISVAIDAGHESFLFY 259
             E  C  N  Y +  D           I +  K +   +   GP+ V     +E F  Y
Sbjct: 203 KCEHHCTGNNSYPIPYDQDKHFGASAYAIGRSAKQIQTEILAHGPVEVGFIV-YEDFYLY 261

Query: 260 KEGIYFEPDCSSEDMDHGVLVVGYGFESTESDNNKYWLVKNSWGEEWGMGGYVKMAKDRR 319
           K GIY       E   H V ++G+G ++       YWL  NSW   WG  GY ++ +   
Sbjct: 262 KTGIYTHV-AGGELGGHAVKMLGWGVDN----GTPYWLAANSWNTVWGEKGYFRILRG-V 315

Query: 320 NHCGIASAA 328
           + CGI SAA
Sbjct: 316 DECGIESAA 324


>Y71H2AM.3 CE26272    (ST.LOUIS) protein_id:AAK29976.1
          Length = 716

 Score = 68.6 bits (166), Expect = 5e-12
 Identities = 55/168 (32%), Positives = 81/168 (47%), Gaps = 23/168 (13%)

Query: 118 VDWREKGYVTPVKNQGQCGSCWAFSATGALEGQMFRKT-GRLISLSEQNLVDCSGPQGNE 176
           +DWR+KG V PVK+QG+C +  AF+ + ++E    + T G L+S SEQ L+DC    G +
Sbjct: 86  LDWRDKGIVGPVKDQGKCNASHAFAISSSIESMYAKATNGSLLSFSEQQLIDCD-DHGFK 144

Query: 177 GCNGGLMDYAFQYVQDNGGLDSEESYPYEATEESCKYNPKYSVANDTGFVDIPKQEKALM 236
           GC       A  Y   + G+++E  YPY   E          ++N+T       Q K L 
Sbjct: 145 GCEEQPAINAVSYFIFH-GIETEADYPYAGKENG-------KLSNET-------QGKEL- 188

Query: 237 KAVATVGPISVAIDAGHESFLFYKEGIYFE--PDCSSEDMDHGVLVVG 282
             V   GP    + A   S   YK GIY     +C+S      +++VG
Sbjct: 189 --VTNYGPAFFTMRA-PPSLYDYKIGIYNPSIEECTSTHEIRSMVIVG 233


  Database: /data_2/jason/blastdb/wormpep62
    Posted date:  Sep 3, 2001  2:17 PM
  Number of letters in database: 8,813,425
  Number of sequences in database:  20,085
  
Lambda     K      H
   0.317    0.133    0.417 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6230268
Number of Sequences: 20085
Number of extensions: 270881
Number of successful extensions: 651
Number of sequences better than 1.0e-10: 23
Number of HSP's better than  0.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 588
Number of HSP's gapped (non-prelim): 27
length of query: 333
length of database: 8,813,425
effective HSP length: 45
effective length of query: 288
effective length of database: 7,909,600
effective search space: 2277964800
effective search space used: 2277964800
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 155 (64.3 bits)
BLASTP 2.1.3 [Apr-11-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= CATL_RAT
         (334 letters)

Database: /data_2/jason/blastdb/wormpep62
           20,085 sequences; 8,813,425 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

T03E6.7 CE16333   cathepsin-like protease (HINXTON) TR:O4573...   325  2e-89
F41E6.6 CE10254   cysteine protease and a protease inhibitor...   203  1e-52
R09F10.1 CE28755   peptidase (ST.LOUIS) TR:Q23030 protein_id...   192  2e-49
R07E3.1 CE02295   cysteine proteinase (HINXTON) TR:Q21810 pr...   139  2e-33
Y40H7A.10 CE21821   Cysteine protease (HINXTON) TR:Q9XWA4 pr...   131  5e-31

>T03E6.7 CE16333   cathepsin-like protease (HINXTON) TR:O45734
           protein_id:CAB07275.1
          Length = 337

 Score =  325 bits (834), Expect = 2e-89
 Identities = 159/311 (51%), Positives = 208/311 (66%), Gaps = 9/311 (2%)

Query: 28  QWHQWKSTHRRLYGTNEEEWRRAVWEKNMRMIQLHNGEYSNGKHGFTMEMNAFGDMTNEE 87
           +W  +K    + Y  +EE+     + KNM  I+ HN ++  G+  F M +N   D+   +
Sbjct: 31  KWDDYKEDFDKEYSESEEQTYMEAFVKNMIHIENHNRDHRLGRKTFEMGLNHIADLPFSQ 90

Query: 88  FRQIVNGYRH----QKHKKGRLFQEPLMLQIPKTVDWREKGCVTPVKNQGQCGSCWAFSA 143
           +R++ NGYR      + K    F  P  +Q+P  VDWR+   VT VKNQG CGSCWAFSA
Sbjct: 91  YRKL-NGYRRLFGDSRIKNSSSFLAPFNVQVPDEVDWRDTHLVTDVKNQGMCGSCWAFSA 149

Query: 144 SGCLEGQMFLKTGKLISLSEQNLVDCSHDQGNQGCNGGLMDFAFQYIKENGGLDSEESYP 203
           +G LEGQ   K G+L+SLSEQNLVDCS   GN GCNGGLMD AF+YI++N G+D+EESYP
Sbjct: 150 TGALEGQHARKLGQLVSLSEQNLVDCSTKYGNHGCNGGLMDQAFEYIRDNHGVDTEESYP 209

Query: 204 YEAKDGSCKYRAEYAVANDTGFVDIPQ-QEKALMKAVATVGPISVAMDASHPSLQFYSSG 262
           Y+ +D  C +  +   A+D G+VD P+  E+ L  AVAT GPIS+A+DA H S Q Y  G
Sbjct: 210 YKGRDMKCHFNKKTVGADDKGYVDTPEGDEEQLKIAVATQGPISIAIDAGHRSFQLYKKG 269

Query: 263 IYYEPNCSSKDLDHGVLVVGYGYEGTDSNKDKYWLVKNSWGKEWGMDGYIKIAKDRNNHC 322
           +YY+  CSS++LDHGVL+VGY   GTD     YW+VKNSWG  WG  GYI+IA++RNNHC
Sbjct: 270 VYYDEECSSEELDHGVLLVGY---GTDPEHGDYWIVKNSWGAGWGEKGYIRIARNRNNHC 326

Query: 323 GLATAASYPIV 333
           G+AT ASYP+V
Sbjct: 327 GVATKASYPLV 337


>F41E6.6 CE10254   cysteine protease and a protease inhibitor (ST.LOUIS)
           TR:O16454 protein_id:AAB65956.1
          Length = 498

 Score =  203 bits (516), Expect = 1e-52
 Identities = 122/331 (36%), Positives = 183/331 (54%), Gaps = 45/331 (13%)

Query: 36  HRRLYGTNEEEWRR-AVWEKNMRMI-QLHNGEYSNGKHGFTMEMNAFGDMTNEEFRQIVN 93
           H + Y    E  +R  V++KN ++I +L   E     +GFT     F DMT  EF++I+ 
Sbjct: 181 HEKKYTNKREVLKRFRVFKKNAKVIRELQKNEQGTAVYGFTK----FSDMTTMEFKKIML 236

Query: 94  GYRHQKH----KKGRLFQEPLMLQ---IPKTVDWREKGCVTPVKNQGQCGSCWAFSASGC 146
            Y+ ++     ++    +  + +    +P++ DWREKG VT VKNQG CGSCWAFS +G 
Sbjct: 237 PYQWEQPVYPMEQANFEKHDVTINEEDLPESFDWREKGAVTQVKNQGNCGSCWAFSTTGN 296

Query: 147 LEGQMFLKTGKLISLSEQNLVDCSHDQGNQGCNGGLMDFAFQ----YIKEN--------- 193
           +EG  F+   KL+SLSEQ LVDC  D  +QGCNGGL   A++     + +N         
Sbjct: 297 VEGAWFIAKNKLVSLSEQELVDC--DSMDQGCNGGLPSNAYKIGKFVVSDNYCFLVFYHK 354

Query: 194 --------GGLDSEESYPYEAKDGSCKYRAEYAVANDTGFVDIPQQEKALMKAVATVGPI 245
                   GGL+ E++YPY+ +  +C    +       G V++P  E  + K + T GPI
Sbjct: 355 TTKEIIRMGGLEPEDAYPYDGRGETCHLVRKDIAVYINGSVELPHDEVEMQKWLVTKGPI 414

Query: 246 SVAMDASHPSLQFYSSGIY--YEPNCSSKDLDHGVLVVGYGYEGTDSNKDKYWLVKNSWG 303
           S+ ++A+  +LQFY  G+   ++  C    L+HGVL+VGYG +G    +  YW+VKNSWG
Sbjct: 415 SIGLNAN--TLQFYRHGVVHPFKIFCEPFMLNHGVLIVGYGKDG----RKPYWIVKNSWG 468

Query: 304 KEWGMDGYIKIAKDRNNHCGLATAASYPIVN 334
             WG  GY K+ + + N CG+   A+  +VN
Sbjct: 469 PNWGEAGYFKLYRGK-NVCGVQEMATSALVN 498


>R09F10.1 CE28755   peptidase (ST.LOUIS) TR:Q23030 protein_id:AAC69091.2
          Length = 383

 Score =  192 bits (488), Expect = 2e-49
 Identities = 116/310 (37%), Positives = 176/310 (56%), Gaps = 29/310 (9%)

Query: 37  RRLYGTNEEEWRRAVWEKNMRMIQLHNGEYSNGKHGFTMEMNAFGDMTNEEFRQIVNGYR 96
           R+     E E+R  ++ +N+  I+    E  N   G  +++N F D T+EE +++V   +
Sbjct: 91  RKYTSVEEFEYRYQIFLRNV--IEFEAEEERN--LGLDLDVNEFTDWTDEELQKMVQENK 146

Query: 97  HQKHKKGRLFQEPLMLQI----PKTVDWREKGCVTPVKNQGQCGSCWAFSASGCLEGQMF 152
           + K+       E   L+     P ++DWRE+G +TP+KNQGQCGSCWAF+    +E Q  
Sbjct: 147 YTKYDFDTPKFEGSYLETGVIRPASIDWREQGKLTPIKNQGQCGSCWAFATVASVEAQNA 206

Query: 153 LKTGKLISLSEQNLVDCSHDQGNQGCNGGLMDFAFQYIKENGGLDSEESYPYEAKDGSCK 212
           +K GKL+SLSEQ +VDC  D  N GC+GG   +A +++KEN GL+SE+ YPY A     K
Sbjct: 207 IKKGKLVSLSEQEMVDC--DGRNNGCSGGYRPYAMKFVKEN-GLESEKEYPYSA----LK 259

Query: 213 YRAEYAVANDTG-FVD----IPQQEKALMKAVATVGPISVAMDASHPSLQFYSSGIYYE- 266
           +   +   NDT  F+D    +   E+ +   V T GP++  M+    ++  Y SGI+   
Sbjct: 260 HDQCFLKENDTRVFIDDFRMLSNNEEDIANWVGTKGPVTFGMNVV-KAMYSYRSGIFNPS 318

Query: 267 -PNCSSKDLD-HGVLVVGYGYEGTDSNKDKYWLVKNSWGKEWGMDGYIKIAKDRNNHCGL 324
             +C+ K +  H + ++GYG EG    +  YW+VKNSWG  WG  GY ++A+  N+ CGL
Sbjct: 319 VEDCTEKSMGAHALTIIGYGGEG----ESAYWIVKNSWGTSWGASGYFRLARGVNS-CGL 373

Query: 325 ATAASYPIVN 334
           A     PI+N
Sbjct: 374 ANTVVAPIIN 383


>R07E3.1 CE02295   cysteine proteinase (HINXTON) TR:Q21810
           protein_id:CAA89070.1
          Length = 402

 Score =  139 bits (351), Expect = 2e-33
 Identities = 96/307 (31%), Positives = 154/307 (49%), Gaps = 36/307 (11%)

Query: 40  YGTNEEEWRRAV----WEKNMRMIQLHNGEYSNGKHGFTMEMNAFGDMTNEEFRQIV--N 93
           Y T++E  +R       ++N+    + N E+ + ++G     N   D T+EEF + +   
Sbjct: 101 YATSQESLKRLNAYYNTDENIANWNIQN-EHGSAEYGH----NDMSDWTDEEFEKTLLPK 155

Query: 94  GYRHQKHKKGRLFQEPLMLQI-----------PKTVDWREKGCVTPVKNQGQCGSCWAFS 142
            +  + HK+   F EP+   +           P   DWR+K  +TPVK QGQCGSCWAF+
Sbjct: 156 SFYKRLHKEAE-FIEPIPESLTAKKGESSSPFPDFFDWRDKNVITPVKAQGQCGSCWAFA 214

Query: 143 ASGCLEGQMFLKTGKLISLSEQNLVDCSHDQGNQGCNGGLMDFAFQYIKENGGLDSEESY 202
           ++  +E    +  G+  +LSEQ L+DC  D  +  C+GG  D AF+YI  N GL +    
Sbjct: 215 STATVEAAWAIAHGEKRNLSEQTLLDC--DLVDNACDGGDEDKAFRYIHRN-GLANAVDL 271

Query: 203 PYEA-KDGSCKYRAEYAVANDTGFVDIPQQEKALMKAVATVGPISVAMDASHPSLQFYSS 261
           PY A +   C     +          +   E +++  +   GP+++ M    P ++ Y  
Sbjct: 272 PYVAHRQNGCAVNDHWNTTRIKAAYFLHHDEDSIINWLVNFGPVNIGMAVIQP-MRAYKG 330

Query: 262 GIY--YEPNCSSKDLD-HGVLVVGYGYEGTDSNKDKYWLVKNSWGKEWGMD-GYIKIAKD 317
           G++   E  C ++ +  H +L+ GY   GT    +KYW+VKNSWG  WG++ GYI  A+ 
Sbjct: 331 GVFTPSEYACKNEVIGLHALLITGY---GTSKTGEKYWIVKNSWGNTWGVEHGYIYFARG 387

Query: 318 RNNHCGL 324
             N CG+
Sbjct: 388 -INACGI 393


>Y40H7A.10 CE21821   Cysteine protease (HINXTON) TR:Q9XWA4
           protein_id:CAA22062.1
          Length = 343

 Score =  131 bits (330), Expect = 5e-31
 Identities = 88/284 (30%), Positives = 152/284 (52%), Gaps = 24/284 (8%)

Query: 48  RRAVWEKNMRMIQLHNGEYSNGKHGFTMEMNAFGDMTNEEFRQIVNGYRHQKHKKGRLFQ 107
           R  ++ +N+ +++ +N E + GK   T E+N F D+T EE+++ +   +   H +  L  
Sbjct: 71  RFTIFSRNLDLVERYNKEDA-GK--VTYELNDFSDLTEEEWKKYLMTPKPD-HSEKSLKP 126

Query: 108 EPLM--LQIPKTVDWRE---KGCVTPVKNQGQCGSCWAFSASGCLEGQMFLKTGKLISLS 162
           + L+    +P +VDWR       VT +K QG CGSCWAF+ +  +E  + +  G L SLS
Sbjct: 127 KTLIDKKNLPNSVDWRNVNGTNHVTGIKYQGPCGSCWAFATAAAIESAVSISGGGLQSLS 186

Query: 163 EQNLVDCSHDQGNQGCNGGLMDFAFQYIKENGGLDSEESYPYEAKDGSCKYRAEYAVAND 222
            Q L+DC+    +  C GG    A +Y + + G+ +  +YPY      C+      VA  
Sbjct: 187 SQQLLDCT--VVSDKCGGGEPVEALKYAQSH-GITTAHNYPYYFWTTKCRETVP-TVARI 242

Query: 223 TGFVDIPQQEKALMKAVATVGPISVAMDASHPSLQFYSSGIYYEPNCSSKDLDHGVLVVG 282
           + ++   + E  + + VA  GP+ V  + +    +FY SGI  +P+C ++   H ++V+G
Sbjct: 243 SSWMK-AESEDEMAQIVALNGPMIVCANFATNKNRFYHSGIAEDPDCGTEP-THALIVIG 300

Query: 283 YGYEGTDSNKDKYWLVKNSWGKEWGMDGYIKIAKDRNNHCGLAT 326
           YG +        YW++KN++ K WG  GY+++ +D  N CG+ T
Sbjct: 301 YGPD--------YWILKNTYSKVWGEKGYMRVKRD-VNWCGINT 335


>K02E7.10 CE11640   protease (ST.LOUIS) TR:O17255 protein_id:AAB71030.1
          Length = 299

 Score =  128 bits (321), Expect = 6e-30
 Identities = 81/222 (36%), Positives = 125/222 (55%), Gaps = 18/222 (8%)

Query: 118 VDWREKGCVTPVKNQGQCGSCWAFSASGCLEGQMFLK--TGKLISLSEQNLVDCSHDQGN 175
           +DWREKG V PVK+QG+C + +AF+A   +E  M+ K   GKL+S SEQ ++DC++    
Sbjct: 84  LDWREKGIVGPVKDQGKCNASYAFAAIAAIE-SMYAKANNGKLLSFSEQQIIDCAN--FT 140

Query: 176 QGCNGGLMD-FAFQYIKENGGLDSEESYPYEAKD--GSCKYRAEYAVANDTGFVDIPQQE 232
             C   L +  + +++KEN G+ +E  YPY  K+  G C+Y +       T ++D+   E
Sbjct: 141 NPCQENLENVLSNRFLKEN-GVGTEADYPYVGKENVGKCEYDSSKMKLRPT-YIDVYPNE 198

Query: 233 KALMKAVATVGPISVAMDASHPSLQFYSSGIY--YEPNCSSKDLDHGVLVVGYGYEGTDS 290
           +     + T G     M  S PS   Y +GIY   +  C + +    + +VGYG +G   
Sbjct: 199 EWARAHITTFGTGYFRM-RSPPSFFHYKTGIYNPTKEECGNANEARSLAIVGYGKDGA-- 255

Query: 291 NKDKYWLVKNSWGKEWGMDGYIKIAKDRNNHCGLATAASYPI 332
             +KYW+VK S+G  WG  GY+K+A++  N CG+A + S PI
Sbjct: 256 --EKYWIVKGSFGTSWGEHGYMKLARN-VNACGMAESISIPI 294


>Y71H2AR.2 CE22930    (ST.LOUIS) protein_id:AAK29985.1
          Length = 345

 Score =  120 bits (301), Expect = 1e-27
 Identities = 81/214 (37%), Positives = 114/214 (52%), Gaps = 14/214 (6%)

Query: 118 VDWREKGCVTPVKNQGQCGSCWAFSASGCLEGQMFLK--TGKLISLSEQNLVDCSHDQGN 175
           +DWREKG V PVK+QG+C +  AF+ +  +E  M+ K   G L+S SEQ L+DC +DQG 
Sbjct: 86  LDWREKGIVGPVKDQGKCNASHAFAITSSIE-SMYAKATNGTLLSFSEQQLIDC-NDQGY 143

Query: 176 QGCNGGLMDFAFQYIKENGGLDSEESYPYEAK-DGSCKYRAEYAVANDTGFVDIPQQEKA 234
           +GC       A  Y+  + G+++E  YPY  K +  C + +  +  +    V     E  
Sbjct: 144 KGCEEQFAMNAIGYLATH-GIETEADYPYVDKTNEKCTFDSTKSKIHLKKGVVAEGNEVL 202

Query: 235 LMKAVATVGPISVAMDASHPSLQFYSSGIYYE--PNCSSKDLDHGVLVVGYGYEGTDSNK 292
               V   GP    M A  PSL  Y  GIY      C+S      +++VGYG EG    +
Sbjct: 203 GKVYVTNYGPAFFTMRAP-PSLYDYKIGIYNPSIEECTSTHEIRSMVIVGYGIEG----E 257

Query: 293 DKYWLVKNSWGKEWGMDGYIKIAKDRNNHCGLAT 326
            KYW+VK S+G  WG  GY+K+A+D  N C +AT
Sbjct: 258 QKYWIVKGSFGTSWGEQGYMKLARD-VNACAMAT 290


>Y51A2D.8 CE19204   Cysteine proteases (2 domains) (HINXTON) TR:Q9XXQ7
           protein_id:CAA16407.1
          Length = 386

 Score =  108 bits (271), Expect = 4e-24
 Identities = 64/203 (31%), Positives = 99/203 (48%), Gaps = 11/203 (5%)

Query: 126 VTPVKNQGQCGSCWAFSASGCLEGQMFLKTGKLISLSEQNLVDCSHDQGNQGCNGGLMDF 185
           V P+K+QGQC  CW F+ +  +E      +GK  SLS+Q + DC   +G  GC GG +  
Sbjct: 164 VGPIKDQGQCACCWGFAVTALVETVYAAHSGKFKSLSDQEVCDCG-TEGTPGCKGGSLTL 222

Query: 186 AFQYIKENGGLDSEESYPYE---AKDG-SCKYRAEYAVANDTGF---VDIPQQEKALMKA 238
             QY+K+  GL  +E YPY+   A  G  C+ R    +     F   V  P++ +  +  
Sbjct: 223 GVQYVKKY-GLSGDEDYPYDQNRANQGRRCRLRETDRIVPARAFNFAVINPRRAEEQIIQ 281

Query: 239 VATVGPISVAMDAS-HPSLQFYSSGIYYEPNCSSKDLDHGVLVVGYG-YEGTDSNKDKYW 296
           V T   + VA+        + Y  G+  E +C      H   +VGY   E +      YW
Sbjct: 282 VLTEWKVPVAVYFKVGDQFKEYKEGVIIEDDCRRATQWHAGAIVGYDTVEDSRGRSHDYW 341

Query: 297 LVKNSWGKEWGMDGYIKIAKDRN 319
           ++KNSWG +W   GY+++ + R+
Sbjct: 342 IIKNSWGGDWAESGYVRVVRGRD 364


>Y113G7B.15 CE23295    (HINXTON) TR:Q9U2X1 protein_id:CAB54334.1
          Length = 328

 Score = 99.4 bits (246), Expect = 3e-21
 Identities = 87/321 (27%), Positives = 127/321 (39%), Gaps = 47/321 (14%)

Query: 36  HRRLYGTNEEEWRR-AVWEKNMRMIQLHNGEYSNGKHGFTMEMNAFGDMTNEEFRQIVNG 94
           H++ Y T  E+ RR A + KN + IQ  N +        T   N F D   +E     N 
Sbjct: 3   HKKHYRTPAEKDRRLAHFAKNHQKIQELNAKARREGRNVTFGWNKFADKNRQEL-SARNS 61

Query: 95  YRHQKHKKGRLFQEPLMLQ----------------IPKTVDWRE-----KGCVTPVKNQG 133
             H K+       +P   +                IP   D R+        V PVK+Q 
Sbjct: 62  KIHPKNHTDLPIYKPRHPRGSRNHHNKRSKRQSGDIPDYFDLRDIYVDGSPVVGPVKDQE 121

Query: 134 QCGSCWAFSASGCLEGQMFLKTGKLISLSEQNLVDCSHDQGNQGCNGGLMDFAFQYIKEN 193
           QCG CWAF+ +   E    L +    SLS+Q + DC+      GC GG      + +   
Sbjct: 122 QCGCCWAFATTAITEAANTLYSKSFTSLSDQEICDCADSGDTPGCVGGDPRNGLKMVHLR 181

Query: 194 GGLDSEESYPYEA----KDGSCKYRAEYAVAN---------DTGFVDIPQQEKALMKAVA 240
            G  S+  YPYE       G+C    +  V           D  + +    E   +  + 
Sbjct: 182 -GQSSDGDYPYEEYRANTTGNCVGDEKSTVIQPETLNVYRFDQDYAEEDIMENLYLNHIP 240

Query: 241 TVGPISVAMDASHPSLQFYSSGIYYEPNCSSKDLD--HGVLVVGYGYEGTDSNKDKYWLV 298
           T     V       + ++Y+SG+    +C        H V +VGY   GT  +   YWLV
Sbjct: 241 TAVYFRVG-----ENFEWYTSGVLQSEDCYQMTPAEWHSVAIVGY---GTSDDGVPYWLV 292

Query: 299 KNSWGKEWGMDGYIKIAKDRN 319
           +NSW  +WG+ GY+KI +  N
Sbjct: 293 RNSWNSDWGLHGYVKIRRGVN 313


>C50F4.3 CE05468   thiol protease (HINXTON) TR:Q18740 protein_id:CAA94738.1
          Length = 374

 Score = 98.2 bits (243), Expect = 6e-21
 Identities = 80/270 (29%), Positives = 119/270 (43%), Gaps = 27/270 (10%)

Query: 71  HGFTMEMNAFGDMTNEEFRQIVNGYRHQKHKKG-------RLFQEPLMLQIPKTVDWREK 123
           H     +N F D++ +E   + + +   K+           L  +  M  +PKT D R K
Sbjct: 90  HDTKYGINKFSDLSKKEIHGMYSKFGPPKNNTNVPKFNLKNLRVKRQMEGLPKTFDLRNK 149

Query: 124 GC-----VTPVKNQGQCGSCWAFSASGCLEGQMFLKTGKLISLSEQNLVDCSHDQGNQGC 178
                  + P+K Q  C  CW F+A+   E  + +   K ++LSEQ + DC+   G  GC
Sbjct: 150 KVGGHYIIGPIKTQDSCACCWGFAATAVAEAALTVHLKKAMNLSEQEVCDCAPKHG-PGC 208

Query: 179 NGGLMDFAFQYIKENGGLDSEESYPYEAKD----GSC---KYRAEY-AVANDTGFVDIPQ 230
           NGG      +YIKE  GL   + YP+        G C   KY  E   +  D   +D   
Sbjct: 209 NGGDPVDGLEYIKEM-GLTGGKEYPFNVNRSTQLGRCESEKYDRELNPLELDYYAIDPFN 267

Query: 231 QEKALMKAVATVG-PISVAMDASHPSLQFYSSGIYYEPNCSSKDLD--HGVLVVGYGYEG 287
            E  +   +  +  PISVA   +  SL  Y SGI    +C  +     H   +VGYG   
Sbjct: 268 AEYQMTHHLYLLNLPISVAF-RTGASLSSYLSGILELADCDDEKGGHWHSGAIVGYGTTK 326

Query: 288 TDSNKD-KYWLVKNSWGKEWGMDGYIKIAK 316
             + +   YW+ +NSW  +WG DGY +I +
Sbjct: 327 NSAGRTVDYWIFRNSWWTDWGDDGYARIVR 356


>F26E4.3 CE17714   cysteine protease (HINXTON) TR:P90850
           protein_id:CAB03007.1
          Length = 491

 Score = 97.8 bits (242), Expect = 8e-21
 Identities = 68/241 (28%), Positives = 113/241 (46%), Gaps = 35/241 (14%)

Query: 113 QIPKTVDWREKG--CVTPVKNQGQCGSCWAFSASGCLEGQM-FLKTGKLIS-LSEQNLVD 168
           ++P+  D R+K    + PV +QG CGS W+ S +     ++  +  G++ S LS Q L+ 
Sbjct: 222 ELPEHFDARDKWGPLIHPVADQGDCGSSWSVSTTAISSDRLAIISEGRINSTLSSQQLLS 281

Query: 169 CSHDQGNQGCNGGLMDFAFQYIKENGGLDSEESYPYEA----KDGSCKY----------- 213
           C+  +  +GC GG +D A+ YI++ G +  +  YPY +    + G C             
Sbjct: 282 CNQHR-QKGCEGGYLDRAWWYIRKLGVV-GDHCYPYVSGQSREPGHCLIPKRDYTNRQGL 339

Query: 214 RAEYAVANDTGFVDIP-----QQEKALMKAVATVGPISVAMDASHPSLQFYSSGIYYEPN 268
           R      + T F   P      +E+ +   + T GP+       H     Y+ G+Y   +
Sbjct: 340 RCPSGSQDSTAFKMTPPYKVSSREEDIQTELMTNGPVQATF-VVHEDFFMYAGGVYQHSD 398

Query: 269 CSSK-------DLDHGVLVVGYGYEGTDSNKDKYWLVKNSWGKEWGMDGYIKIAKDRNNH 321
            +++       +  H V V+G+G + +     KYWL  NSWG +WG DGY K+ +   NH
Sbjct: 399 LAAQKGASSVAEGYHSVRVLGWGVDHSTGKPIKYWLCANSWGTQWGEDGYFKVLRG-ENH 457

Query: 322 C 322
           C
Sbjct: 458 C 458


>F15D4.4 CE28917   cysteine protease (HINXTON) TR:Q93512
           protein_id:CAB02487.1
          Length = 622

 Score = 96.7 bits (239), Expect = 2e-20
 Identities = 65/219 (29%), Positives = 102/219 (45%), Gaps = 35/219 (15%)

Query: 117 TVDWREKGCVTPVKNQGQCGSCWAFSASGCLEGQMFLKTGKLISLSEQNLVDC------S 170
           TVDWR    + P+ +Q  CG CWAFS    +E    ++     SLS Q L+ C      +
Sbjct: 226 TVDWRP--FLKPILDQSTCGGCWAFSMISMIESFFAIQGYNTSSLSVQQLLTCDTKVDST 283

Query: 171 HDQGNQGCNGGLMDFAFQYIKENGGLDSEESYPYEAKDGSCK-------------YRAEY 217
           +   N GC GG    A  Y++ +   D+    P++ +D SC              +   Y
Sbjct: 284 YGLANVGCKGGYFQIAGSYLEVSAARDAS-LIPFDLEDTSCDSSFFPPVVPTILLFDDGY 342

Query: 218 AVANDTGFVDIPQQEKALMKAVATVGPISVAMDASHPSLQFYSSGIYYEPNCSSKDLDHG 277
              N T    I  ++    K     GPI+V M A+ P +  YS G+Y + +C +  ++H 
Sbjct: 343 ISGNFTAAQLITMEQNIEDKV--RKGPIAVGM-AAGPDIYKYSEGVY-DGDCGTI-INHA 397

Query: 278 VLVVGYGYEGTDSNKDKYWLVKNSWGKEWGMDGYIKIAK 316
           V++VG+         D YW+++NSWG  WG  GY ++ +
Sbjct: 398 VVIVGF--------TDDYWIIRNSWGASWGEAGYFRVKR 428


>C32B5.7 CE08515   cathepsin-like peptidase (ST.LOUIS) TR:P91111
           protein_id:AAB37963.1
          Length = 250

 Score = 90.1 bits (222), Expect = 2e-18
 Identities = 63/191 (32%), Positives = 98/191 (50%), Gaps = 18/191 (9%)

Query: 118 VDWREKGCVTPVKNQGQCGSCWAFSASGCLEGQMFLKTGKLISLSEQNLVDCSHDQGNQG 177
           +DWR++G V PVK+QG C + +AF+A   +E    +  G+L+S SEQ ++DC    G   
Sbjct: 72  LDWRDEGVVGPVKDQGNCNASYAFAAISAIESMYAIANGQLLSFSEQQIIDC---LGGCA 128

Query: 178 CNGGLMDFAFQYIKENGGLDSEESYPYEA-KDGSCKY--RAEYAVANDTGFVDIPQQEKA 234
                M  A  Y+ E  G+++   YP+   K+  C+Y  +  Y + +DT   D+  +  A
Sbjct: 129 IESDPM-MAMTYL-ERKGIETYTDYPFVGKKNEKCEYDSKKAYLILDDT--YDMSDESLA 184

Query: 235 LMKAVATVGPISVAMDASHPSLQFYSSGIY--YEPNCSSKDLDHGVLVVGYGYEGTDSNK 292
           L+  +   GP    M+ + PS   Y SGIY   E  C S +    + +VGYG    +   
Sbjct: 185 LV-FIDERGPGLFTMN-TPPSFFNYKSGIYNPTEEECKSTNEKRALTIVGYG----NDKG 238

Query: 293 DKYWLVKNSWG 303
             YW+VK S+G
Sbjct: 239 QNYWIVKGSFG 249


>Y51A2D.1 CE18411   Cysteine proteases (2 domains) (HINXTON) TR:O62484
           protein_id:CAA16404.1
          Length = 382

 Score = 87.8 bits (216), Expect = 8e-18
 Identities = 87/350 (24%), Positives = 139/350 (38%), Gaps = 76/350 (21%)

Query: 31  QWKSTHRRLYGTNEEEWRRA---VWEKNMRMIQLHNGEYSNGKHGFTMEMNAFGDMTNEE 87
           ++K    R Y +  E   R    V  +N  +++L+      G++     +N F D+T  E
Sbjct: 46  EFKKKFSRTYKSEAENQLRLQNFVKSRN-NVVRLNKNAQKAGRNS-NFAVNQFSDLTTSE 103

Query: 88  FRQIV---------NGYRHQKHKK--GRLFQEPLMLQIPKTVDWREKGC-----VTPVKN 131
             Q +         N   H+  KK  G+   +    +  +  D R +       V P+KN
Sbjct: 104 LHQRLSRFPPNLTENSVFHKNFKKLLGKTRTKRQNSEFARNFDLRSQKVNGRYIVGPIKN 163

Query: 132 QGQCGSCWAFSASGCLEG------------------------------QMFLKTGKLISL 161
           QGQC  CW F+ +  LE                               +   K    +S 
Sbjct: 164 QGQCACCWGFAVTAMLETIYAVNVGRFKLMSHIPALAPNFSDFDFFFFEFLAKLNMFLSF 223

Query: 162 SEQNLVDCSHDQGNQGCNGGLMDFAFQYIKENGGLDSEESYPYEAKDGSCKYRAEYAVAN 221
           S+Q + DC+ D    GC GG + +  +Y   N GL SE  YP   ++ + +     A+ +
Sbjct: 224 SDQEMCDCATDGTKAGCAGGGLMWGVEY-AINNGLASEFDYPEFDQNRATRPGTCEAMDD 282

Query: 222 DTGFVDIPQQEKALMKAVATVGPISVAMDASHPSLQFYSSGIYYEPNCS-SKDLDHGVLV 280
           D                  T  P++ A  A    LQ Y SG+    +C  +  + H   +
Sbjct: 283 D-----------------KTFPPVNFA--AGTAFLQ-YKSGVLVTEDCDLAGTVWHAGAI 322

Query: 281 VGYGYEG-TDSNKDKYWLVKNSWG-KEWGMDGYIKIAKDRNNHCGLATAA 328
           VGYG E        ++W++KNSWG   WG  GY+K+ + + N CG+   A
Sbjct: 323 VGYGEENDLRGRSQRFWIMKNSWGVSGWGTGGYVKLIRGK-NWCGIERGA 371


>C52E4.1 CE08943  locus:cpr-1 cathepsin-like cysteine protease (HINXTON)
           TR:Q18783 protein_id:CAB01410.1
          Length = 340

 Score = 87.4 bits (215), Expect = 1e-17
 Identities = 66/252 (26%), Positives = 110/252 (43%), Gaps = 39/252 (15%)

Query: 107 QEPLMLQIPKTVD----WREKGCVTPVKNQGQCGSCWAFSASGCLEGQMFLKT--GKLIS 160
           QE ++  +P T D    W E   +  +++Q  CGSCWAF A+  +  +  ++T   +   
Sbjct: 89  QEVVLASVPATFDSRTQWSECKSIKLIRDQATCGSCWAFGAAEMISDRTCIETKGAQQPI 148

Query: 161 LSEQNLVDCSHDQGNQGCNGGLMDFAFQYIKENGGLDSEESY-----PY----------- 204
           +S  +L+ C       GC GG    A ++    G +   + +     PY           
Sbjct: 149 ISPDDLLSCCGSSCGNGCEGGYPIQALRWWDSKGVVTGGDYHGAGCKPYPIAPCTSGNCP 208

Query: 205 EAKDGSCKYRAEY----AVANDTGF----VDIPQQEKALMKAVATVGPISVAMDASHPSL 256
           E+K  SC    +     A A D  F      +P+   ++   +   GP+  A    +   
Sbjct: 209 ESKTPSCSMSCQSGYSTAYAKDKHFGVSAYAVPKNAASIQAEIYANGPVEAAFSV-YEDF 267

Query: 257 QFYSSGIYYEPNCSSKDLD-HGVLVVGYGYEGTDSNKDKYWLVKNSWGKEWGMDGYIKIA 315
             Y SG+Y   + + K L  H + ++G+G E    +   YWLV NSWG  WG  G+ KI 
Sbjct: 268 YKYKSGVY--KHTAGKYLGGHAIKIIGWGTE----SGSPYWLVANSWGVNWGESGFFKIY 321

Query: 316 KDRNNHCGLATA 327
           +  ++ CG+ +A
Sbjct: 322 RG-DDQCGIESA 332


>F32B5.8 CE09855   cysteine proteinase (ST.LOUIS) TR:O01850
           protein_id:AAB54210.1
          Length = 427

 Score = 85.9 bits (211), Expect = 3e-17
 Identities = 73/261 (27%), Positives = 123/261 (46%), Gaps = 36/261 (13%)

Query: 88  FRQIVNGYRHQKHKKGRLFQEPLMLQIPKTVDWREKGCVTPV---KNQG---QCGSCWAF 141
           ++Q    + H+++ +    ++     +PKT DWR+   +      +NQ     CGSCWAF
Sbjct: 160 YKQTGRVFEHKRYDRIYETEDFDSEDLPKTWDWRDANGINYASADRNQHIPQYCGSCWAF 219

Query: 142 SASGCLEGQMFLKTGKL---ISLSEQNLVDCSHDQGNQGC-NGGLMDFAFQYIKENGGLD 197
            A+  L  ++ +K         LS Q ++DCS   G   C  GG     ++Y  E+G + 
Sbjct: 220 GATSALADRINIKRKNAWPQAYLSVQEVIDCS---GAGTCVMGGEPGGVYKYAHEHG-IP 275

Query: 198 SEESYPYEAKDGSCK-YRA-------------EYAVANDTGFVDIPQQEKALMKA-VATV 242
            E    Y+A+DG C  Y                Y +   + +  +   EK  MKA +   
Sbjct: 276 HETCNNYQARDGKCDPYNRCGSCWPGECFSIKNYTLYKVSEYGTVHGYEK--MKAEIYHK 333

Query: 243 GPISVAMDASHPSLQFYSSGIYYEPNCSSKDLDHGVLVVGYGYEGTDSNKDKYWLVKNSW 302
           GPI+  + A+  + + Y+ GIY E   + +D+DH + V G+G +    +  +YW+ +NSW
Sbjct: 334 GPIACGIAATK-AFETYAGGIYKE--VTDEDIDHIISVHGWGVD--HESGVEYWIGRNSW 388

Query: 303 GKEWGMDGYIKIAKDRNNHCG 323
           G+ WG  G+ KI   +  + G
Sbjct: 389 GEPWGEHGWFKIVTSQYKNAG 409


>M04G12.2 CE12424   cysteine protease (HINXTON) TR:P92005
           protein_id:CAB03209.1
          Length = 467

 Score = 83.2 bits (204), Expect = 2e-16
 Identities = 62/228 (27%), Positives = 107/228 (46%), Gaps = 33/228 (14%)

Query: 114 IPKTVDWREKGCV---TPVKNQG---QCGSCWAFSASGCLEGQMFL-KTGK--LISLSEQ 164
           +P   DWR    V   +P +NQ     CGSCW F  +G L  +  + + G+  +  LS Q
Sbjct: 221 LPTGWDWRNVSGVNYCSPTRNQHIPVYCGSCWVFGTTGALNDRFNVARKGRWPMTQLSPQ 280

Query: 165 NLVDCSHDQGNQGCNGGLMDFAFQYIKENGGLD---------SEESYPYEAKDGSCKYRA 215
            ++DC+   G   C GG +    ++ K  G ++         + E  PY  + GSC    
Sbjct: 281 EIIDCN---GKGNCQGGEIGNVLEHAKIQGLVEEGCNVYRATNGECNPYH-RCGSCWPNE 336

Query: 216 EYAVANDTGFV-----DIPQQEKALMKAVATVGPISVAMDASHPSLQFYSSGIYYEPNCS 270
            +++ N T +       +  ++K +M  +   GPI+ A+ A+      Y  G+Y E   S
Sbjct: 337 CFSLTNYTRYYVKDYGQVQGRDK-IMSEIKKGGPIACAIGATKKFEYEYVKGVYSEK--S 393

Query: 271 SKDLDHGVLVVGYGYEGTDSNKDKYWLVKNSWGKEWGMDGYIKIAKDR 318
             + +H + + G+G    D N  +YW+ +NSWG+ WG  G+ ++   +
Sbjct: 394 DLESNHIISLTGWG---VDENGVEYWIARNSWGEAWGELGWFRVVTSK 438


>Y71H2AM.3 CE26272    (ST.LOUIS) protein_id:AAK29976.1
          Length = 716

 Score = 75.5 bits (184), Expect = 4e-14
 Identities = 60/169 (35%), Positives = 83/169 (48%), Gaps = 25/169 (14%)

Query: 118 VDWREKGCVTPVKNQGQCGSCWAFSASGCLEGQMFLK--TGKLISLSEQNLVDCSHDQGN 175
           +DWR+KG V PVK+QG+C +  AF+ S  +E  M+ K   G L+S SEQ L+DC  D G 
Sbjct: 86  LDWRDKGIVGPVKDQGKCNASHAFAISSSIE-SMYAKATNGSLLSFSEQQLIDCD-DHGF 143

Query: 176 QGCNGGLMDFAFQYIKENGGLDSEESYPYEAKDGSCKYRAEYAVANDTGFVDIPQQEKAL 235
           +GC       A  Y   + G+++E  YPY  K+          ++N+T       Q K L
Sbjct: 144 KGCEEQPAINAVSYFIFH-GIETEADYPYAGKENG-------KLSNET-------QGKEL 188

Query: 236 MKAVATVGPISVAMDASHPSLQFYSSGIYYE--PNCSSKDLDHGVLVVG 282
              V   GP    M A  PSL  Y  GIY      C+S      +++VG
Sbjct: 189 ---VTNYGPAFFTMRAP-PSLYDYKIGIYNPSIEECTSTHEIRSMVIVG 233


>T10H4.12 CE27590  locus:cpr-3 protease (HINXTON) TR:Q9TW93
           protein_id:CAB61024.2
          Length = 370

 Score = 74.7 bits (182), Expect = 7e-14
 Identities = 60/250 (24%), Positives = 102/250 (40%), Gaps = 42/250 (16%)

Query: 102 KGRLFQEPLMLQIPKTVDWREK----GCVTPVKNQGQCGSCWAFSASGCLEGQMFLKTG- 156
           +G +  EPL    P T D REK      +  ++NQ  CGSCWAF A+  +  ++ +++  
Sbjct: 84  RGEIVPEPL----PDTFDAREKWPDCNTIKLIRNQATCGSCWAFGAAEVISDRVCIQSNG 139

Query: 157 -KLISLSEQNLVDCSHDQGNQGCNGGLMDFAFQYIKENGGLDSEE-----SYPY------ 204
            +   +S ++++ C       GC GG    A ++   +G +   +       PY      
Sbjct: 140 TQQPVISVEDILSCCGTTCGYGCKGGYSIEALRFWASSGAVTGGDYGGHGCMPYSFAPCT 199

Query: 205 ----EAKDGSCK-----------YRAEYAVANDTGFVDIPQQEKALMKAVATVGPISVAM 249
               E+   SCK           Y+ +         V   +    +   +   GP+  + 
Sbjct: 200 KNCPESTTPSCKTTCQSSYKTEEYKKDKHYGASAYKVTTTKSVTEIQTEIYHYGPVEASY 259

Query: 250 DASHPSLQFYSSGIYYEPNCSSKDLDHGVLVVGYGYEGTDSNKDKYWLVKNSWGKEWGMD 309
              +     Y SG+Y+  +       H V ++G+G E    N   YWL+ NSWG  +G  
Sbjct: 260 KV-YEDFYHYKSGVYHYTSGKLVG-GHAVKIIGWGVE----NGVDYWLIANSWGTSFGEK 313

Query: 310 GYIKIAKDRN 319
           G+ KI +  N
Sbjct: 314 GFFKIRRGTN 323


>F36D3.9 CE15973   cysteine protease (HINXTON) TR:O45466
           protein_id:CAB04322.1
          Length = 345

 Score = 71.6 bits (174), Expect = 6e-13
 Identities = 63/235 (26%), Positives = 98/235 (40%), Gaps = 40/235 (17%)

Query: 120 WREKGCVTPVKNQGQCGSCWAFSASGCLEGQMFLKTGKLIS--LSEQNLVDCSHDQGNQG 177
           W +   +  ++ Q  CGSCWAFS +  +  +  + +       +S  +L+ C      +G
Sbjct: 111 WPQCKSMKLIREQSNCGSCWAFSTAEVISDRTCIASNGTQQPIISPTDLLTCCGMSCGEG 170

Query: 178 CNGGLMDFAFQYIKENGGLDSEE-------SYPYEAKDG-------------SCK--YRA 215
           C+GG    AFQ+    G +   +        YP    +              SC+  YR 
Sbjct: 171 CDGGFPYRAFQWWARRGVVTGGDYLGTGCKPYPIRPCNSDNCVNLQTPPCRLSCQPGYRT 230

Query: 216 EYAVANDTGF-----VDIPQQEKALMKAVATVGPISVAMDASHPSLQFYSSGIYYEPNCS 270
            Y   ND  +       +P+   A+   +   GP+ VA    +   + Y SGIY      
Sbjct: 231 TYT--NDKNYGSNSAYPVPRTVAAIQADIYYNGPV-VAAFIVYEDFEKYKSGIYRHIAGR 287

Query: 271 SKDLDHGVLVVGYGYE-GTDSNKDKYWLVKNSWGKEWGMDGYIKIAKDRNNHCGL 324
           SK   H V ++G+G E GT      YWL  NSWG +WG  G  +I +   + CG+
Sbjct: 288 SKG-GHAVKLIGWGTERGTP-----YWLAVNSWGSQWGESGTFRILRG-VDECGI 335


  Database: /data_2/jason/blastdb/wormpep62
    Posted date:  Sep 3, 2001  2:17 PM
  Number of letters in database: 8,813,425
  Number of sequences in database:  20,085
  
Lambda     K      H
   0.317    0.134    0.426 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6241552
Number of Sequences: 20085
Number of extensions: 276768
Number of successful extensions: 629
Number of sequences better than 1.0e-10: 20
Number of HSP's better than  0.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 578
Number of HSP's gapped (non-prelim): 20
length of query: 334
length of database: 8,813,425
effective HSP length: 44
effective length of query: 290
effective length of database: 7,929,685
effective search space: 2299608650
effective search space used: 2299608650
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 156 (64.7 bits)
BLASTP 2.1.3 [Apr-11-2001]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= PAPA_CARPA
         (345 letters)

Database: /data_2/jason/blastdb/wormpep62
           20,085 sequences; 8,813,425 total letters

Searching..................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

R09F10.1 CE28755   peptidase (ST.LOUIS) TR:Q23030 protein_id...   174  7e-44
T03E6.7 CE16333   cathepsin-like protease (HINXTON) TR:O4573...   171  5e-43
Y40H7A.10 CE21821   Cysteine protease (HINXTON) TR:Q9XWA4 pr...   160  8e-40
F41E6.6 CE10254   cysteine protease and a protease inhibitor...   156  2e-38
Y51A2D.8 CE19204   Cysteine proteases (2 domains) (HINXTON) ...   127  1e-29

>R09F10.1 CE28755   peptidase (ST.LOUIS) TR:Q23030 protein_id:AAC69091.2
          Length = 383

 Score =  174 bits (441), Expect = 7e-44
 Identities = 107/348 (30%), Positives = 173/348 (48%), Gaps = 18/348 (5%)

Query: 7   ISKLLFVAICLFVYMGLSFGDFSIVGYSQNDLTSTERLIQLFESWMLKHNKIYKNIDEKI 66
           +++L    + L + + LSF  F  + +   +L       Q+F  ++LK ++ Y +++E  
Sbjct: 45  LTQLFSGLVLLTMLILLSFFVFQRLNHKMENLKHE----QMFNDFILKFDRKYTSVEEFE 100

Query: 67  YRFEIFKDNLKYIDETNKKNNSYWLGLNVFADMSNDEFKEKYTGSIAGNYTTTELSYEEV 126
           YR++IF  N+   +   ++N    L +N F D +++E ++    +    Y      +E  
Sbjct: 101 YRYQIFLRNVIEFEAEEERNLGLDLDVNEFTDWTDEELQKMVQENKYTKYDFDTPKFEGS 160

Query: 127 LNDGDVNIPEYVDWRQKGAVTPVKNQGSCGSCWAFSAVVTIEGIIKIRTGNLNEYSEQEL 186
             +  V  P  +DWR++G +TP+KNQG CGSCWAF+ V ++E    I+ G L   SEQE+
Sbjct: 161 YLETGVIRPASIDWREQGKLTPIKNQGQCGSCWAFATVASVEAQNAIKKGKLVSLSEQEM 220

Query: 187 LDCDRRSYGCNGGYPWSALQLVAQYGIHYRNTYPYEGVQRYCRSREKGPYAAKTDGVRQV 246
           +DCD R+ GC+GGY   A++ V + G+     YPY  ++      ++       D  R +
Sbjct: 221 VDCDGRNNGCSGGYRPYAMKFVKENGLESEKEYPYSALKHDQCFLKENDTRVFIDDFRML 280

Query: 247 QPYNEGALLYSIANQPVSVVLEAAGKDFQLYRGGIF---VGPCGNKV--DHAVAAVGYGP 301
               E    +     PV+  +    K    YR GIF   V  C  K    HA+  +GYG 
Sbjct: 281 SNNEEDIANWVGTKGPVTFGMNVV-KAMYSYRSGIFNPSVEDCTEKSMGAHALTIIGYGG 339

Query: 302 N----YILIKNSWGTGWGENGYIRIKRGTGNSYGVCGLYTSSFYPVKN 345
                Y ++KNSWGT WG +GY R+ RG  +    CGL  +   P+ N
Sbjct: 340 EGESAYWIVKNSWGTSWGASGYFRLARGVNS----CGLANTVVAPIIN 383


>T03E6.7 CE16333   cathepsin-like protease (HINXTON) TR:O45734
           protein_id:CAB07275.1
          Length = 337

 Score =  171 bits (434), Expect = 5e-43
 Identities = 107/319 (33%), Positives = 163/319 (50%), Gaps = 25/319 (7%)

Query: 42  ERLIQLFESWMLKHNKIYKNIDEKIYRFEIFKDNLKYIDETNKKNN----SYWLGLNVFA 97
           E  I+ ++ +    +K Y   +E+ Y  E F  N+ +I+  N+ +     ++ +GLN  A
Sbjct: 26  ESAIEKWDDYKEDFDKEYSESEEQTY-MEAFVKNMIHIENHNRDHRLGRKTFEMGLNHIA 84

Query: 98  DMSNDEFKEK--YTGSIAGNYTTTELSYEEVLNDGDVNIPEYVDWRQKGAVTPVKNQGSC 155
           D+   ++++   Y      +      S+    N   V +P+ VDWR    VT VKNQG C
Sbjct: 85  DLPFSQYRKLNGYRRLFGDSRIKNSSSFLAPFN---VQVPDEVDWRDTHLVTDVKNQGMC 141

Query: 156 GSCWAFSAVVTIEGIIKIRTGNLNEYSEQELLDCDRR--SYGCNGGYPWSALQLVA-QYG 212
           GSCWAFSA   +EG    + G L   SEQ L+DC  +  ++GCNGG    A + +   +G
Sbjct: 142 GSCWAFSATGALEGQHARKLGQLVSLSEQNLVDCSTKYGNHGCNGGLMDQAFEYIRDNHG 201

Query: 213 IHYRNTYPYEGVQRYCRSREKGPYAAKTDGVRQVQPYNEGALLYSIANQ-PVSVVLEAAG 271
           +    +YPY+G    C   +K    A   G       +E  L  ++A Q P+S+ ++A  
Sbjct: 202 VDTEESYPYKGRDMKCHFNKK-TVGADDKGYVDTPEGDEEQLKIAVATQGPISIAIDAGH 260

Query: 272 KDFQLYRGGIFVGP--CGNKVDHAVAAVGYGP-----NYILIKNSWGTGWGENGYIRIKR 324
           + FQLY+ G++        ++DH V  VGYG      +Y ++KNSWG GWGE GYIRI R
Sbjct: 261 RSFQLYKKGVYYDEECSSEELDHGVLLVGYGTDPEHGDYWIVKNSWGAGWGEKGYIRIAR 320

Query: 325 GTGNSYGVCGLYTSSFYPV 343
              N    CG+ T + YP+
Sbjct: 321 NRNNH---CGVATKASYPL 336


>Y40H7A.10 CE21821   Cysteine protease (HINXTON) TR:Q9XWA4
           protein_id:CAA22062.1
          Length = 343

 Score =  160 bits (406), Expect = 8e-40
 Identities = 100/295 (33%), Positives = 153/295 (50%), Gaps = 15/295 (5%)

Query: 48  FESWMLKHNKIYKNIDEKIYRFEIFKDNLKYIDETNKKN-NSYWLGLNVFADMSNDEFKE 106
           F+++++K+ + Y N  E + RF IF  NL  ++  NK++       LN F+D++ +E+K 
Sbjct: 51  FQNFLVKYLREYPNEYEIVKRFTIFSRNLDLVERYNKEDAGKVTYELNDFSDLTEEEWK- 109

Query: 107 KYTGSIAGNYTTTELSYEEVLNDGDVNIPEYVDWRQKGA---VTPVKNQGSCGSCWAFSA 163
           KY  +   +++   L  + +++    N+P  VDWR       VT +K QG CGSCWAF+ 
Sbjct: 110 KYLMTPKPDHSEKSLKPKTLIDKK--NLPNSVDWRNVNGTNHVTGIKYQGPCGSCWAFAT 167

Query: 164 VVTIEGIIKIRTGNLNEYSEQELLDCDRRSYGCNGGYPWSALQLVAQYGIHYRNTYPYEG 223
              IE  + I  G L   S Q+LLDC   S  C GG P  AL+    +GI   + YPY  
Sbjct: 168 AAAIESAVSISGGGLQSLSSQQLLDCTVVSDKCGGGEPVEALKYAQSHGITTAHNYPYYF 227

Query: 224 VQRYCRSREKGPYAAKTDGVRQVQPYNEGALLYSIANQPVSVVLEAAGKDFQLYRGGIFV 283
               C  RE  P  A+     + +  +E A + ++ N P+ V    A    + Y  GI  
Sbjct: 228 WTTKC--RETVPTVARISSWMKAESEDEMAQIVAL-NGPMIVCANFATNKNRFYHSGIAE 284

Query: 284 GP-CGNKVDHAVAAVGYGPNYILIKNSWGTGWGENGYIRIKRGTGNSYGVCGLYT 337
            P CG +  HA+  +GYGP+Y ++KN++   WGE GY+R+KR        CG+ T
Sbjct: 285 DPDCGTEPTHALIVIGYGPDYWILKNTYSKVWGEKGYMRVKR----DVNWCGINT 335


>F41E6.6 CE10254   cysteine protease and a protease inhibitor (ST.LOUIS)
           TR:O16454 protein_id:AAB65956.1
          Length = 498

 Score =  156 bits (395), Expect = 2e-38
 Identities = 110/327 (33%), Positives = 156/327 (47%), Gaps = 51/327 (15%)

Query: 48  FESWMLKHNKIYKNIDEKIYRFEIFKDNLKYIDETNKKNNSYWL-GLNVFADMSNDEFKE 106
           F  ++ +H K Y N  E + RF +FK N K I E  K      + G   F+DM+  EFK+
Sbjct: 174 FLDFVDRHEKKYTNKREVLKRFRVFKKNAKVIRELQKNEQGTAVYGFTKFSDMTTMEFKK 233

Query: 107 -----KYTGSIAGNYTTTELSYEEVLNDGDVNIPEYVDWRQKGAVTPVKNQGSCGSCWAF 161
                ++   +          ++  +N+ D  +PE  DWR+KGAVT VKNQG+CGSCWAF
Sbjct: 234 IMLPYQWEQPVYPMEQANFEKHDVTINEED--LPESFDWREKGAVTQVKNQGNCGSCWAF 291

Query: 162 SAVVTIEGIIKIRTGNLNEYSEQELLDCDRRSYGCNGGYPWSAL---------------- 205
           S    +EG   I    L   SEQEL+DCD    GCNGG P +A                 
Sbjct: 292 STTGNVEGAWFIAKNKLVSLSEQELVDCDSMDQGCNGGLPSNAYKIGKFVVSDNYCFLVF 351

Query: 206 ------QLVAQYGIHYRNTYPYEGVQRYCRSREKGPYAAKTDGVRQVQPYNEGAL-LYSI 258
                 +++   G+   + YPY+G    C    K   A   +G  ++ P++E  +  + +
Sbjct: 352 YHKTTKEIIRMGGLEPEDAYPYDGRGETCHLVRK-DIAVYINGSVEL-PHDEVEMQKWLV 409

Query: 259 ANQPVSVVLEAAGKDFQLYRGG------IFVGPCGNKVDHAVAAVGYGPN----YILIKN 308
              P+S+ L A     Q YR G      IF  P    ++H V  VGYG +    Y ++KN
Sbjct: 410 TKGPISIGLNA--NTLQFYRHGVVHPFKIFCEPF--MLNHGVLIVGYGKDGRKPYWIVKN 465

Query: 309 SWGTGWGENGYIRIKRGTGNSYGVCGL 335
           SWG  WGE GY ++ RG      VCG+
Sbjct: 466 SWGPNWGEAGYFKLYRGK----NVCGV 488


>Y51A2D.8 CE19204   Cysteine proteases (2 domains) (HINXTON) TR:Q9XXQ7
           protein_id:CAA16407.1
          Length = 386

 Score =  127 bits (318), Expect = 1e-29
 Identities = 95/332 (28%), Positives = 148/332 (43%), Gaps = 44/332 (13%)

Query: 37  DLTSTERLIQLFESWMLKHNKIYKNIDEKIYRFEIFKDNLKYIDETNKKNNSYW----LG 92
           D    E+L + FE +  K+N+ YK+  E   RF  F  +   +D+ N K+ +       G
Sbjct: 32  DRDHPEKLYKAFEDFKKKYNRKYKDESENQQRFNNFVKSYNNVDKLNAKSKAAGYDTQFG 91

Query: 93  LNVFADMSNDEFKEKYTGSIAGNYTTTE-LSYEEVLND---GDVN----------IPEYV 138
           +N F+D+S  EF  + +  +  N T    L++++   D    D+N           P+Y 
Sbjct: 92  INKFSDLSTAEFHGRLSNVVPSNNTGLPMLNFDKKKPDFRAADMNKTRHKRRSTRYPDYF 151

Query: 139 DWRQKGA-----VTPVKNQGSCGSCWAFSAVVTIEGIIKIRTGNLNEYSEQELLDCDRR- 192
           D R +       V P+K+QG C  CW F+    +E +    +G     S+QE+ DC    
Sbjct: 152 DLRNEKINGRYIVGPIKDQGQCACCWGFAVTALVETVYAAHSGKFKSLSDQEVCDCGTEG 211

Query: 193 SYGCNGGYPWSALQLVAQYGIHYRNTYPYE----GVQRYCRSREKGPYA-AKTDGVRQVQ 247
           + GC GG     +Q V +YG+     YPY+       R CR RE      A+      + 
Sbjct: 212 TPGCKGGSLTLGVQYVKKYGLSGDEDYPYDQNRANQGRRCRLRETDRIVPARAFNFAVIN 271

Query: 248 PYNEGALLYSIANQ---PVSVVLEAAGKDFQLYRGGIFV-GPCGNKVD-HAVAAVGY--- 299
           P      +  +  +   PV+V  +  G  F+ Y+ G+ +   C      HA A VGY   
Sbjct: 272 PRRAEEQIIQVLTEWKVPVAVYFK-VGDQFKEYKEGVIIEDDCRRATQWHAGAIVGYDTV 330

Query: 300 ------GPNYILIKNSWGTGWGENGYIRIKRG 325
                   +Y +IKNSWG  W E+GY+R+ RG
Sbjct: 331 EDSRGRSHDYWIIKNSWGGDWAESGYVRVVRG 362


>R07E3.1 CE02295   cysteine proteinase (HINXTON) TR:Q21810
           protein_id:CAA89070.1
          Length = 402

 Score =  114 bits (286), Expect = 7e-26
 Identities = 90/309 (29%), Positives = 139/309 (44%), Gaps = 41/309 (13%)

Query: 54  KHNKIYKNIDEKIYRFEIFKDNLKYIDETNKKNN--SYWLGLNVFADMSNDEFKEKYTGS 111
           K +K Y    E + R   + +  + I   N +N   S   G N  +D +++EF++     
Sbjct: 96  KFDKSYATSQESLKRLNAYYNTDENIANWNIQNEHGSAEYGHNDMSDWTDEEFEKTLLPK 155

Query: 112 IAGNYTTTELSYEEVL--------NDGDVNIPEYVDWRQKGAVTPVKNQGSCGSCWAFSA 163
                   E  + E +         +     P++ DWR K  +TPVK QG CGSCWAF++
Sbjct: 156 SFYKRLHKEAEFIEPIPESLTAKKGESSSPFPDFFDWRDKNVITPVKAQGQCGSCWAFAS 215

Query: 164 VVTIEGIIKIRTGNLNEYSEQELLDCDRRSYGCNGGYPWSALQLVAQYGIHYRNTYPYEG 223
             T+E    I  G     SEQ LLDCD     C+GG    A + + + G+      PY  
Sbjct: 216 TATVEAAWAIAHGEKRNLSEQTLLDCDLVDNACDGGDEDKAFRYIHRNGLANAVDLPYVA 275

Query: 224 VQR--------YCRSREKGPYAAKTDGVRQVQPYNEGALLYSIAN-QPVSVVLEAAGKDF 274
            ++        +  +R K  Y    D         E +++  + N  PV++ + A  +  
Sbjct: 276 HRQNGCAVNDHWNTTRIKAAYFLHHD---------EDSIINWLVNFGPVNIGM-AVIQPM 325

Query: 275 QLYRGGIFVG---PCGNKVD--HAVAAVGYGPN-----YILIKNSWGTGWG-ENGYIRIK 323
           + Y+GG+F      C N+V   HA+   GYG +     Y ++KNSWG  WG E+GYI   
Sbjct: 326 RAYKGGVFTPSEYACKNEVIGLHALLITGYGTSKTGEKYWIVKNSWGNTWGVEHGYIYFA 385

Query: 324 RGTGNSYGV 332
           RG  N+ G+
Sbjct: 386 RGI-NACGI 393


>C50F4.3 CE05468   thiol protease (HINXTON) TR:Q18740 protein_id:CAA94738.1
          Length = 374

 Score =  114 bits (286), Expect = 7e-26
 Identities = 97/357 (27%), Positives = 152/357 (42%), Gaps = 39/357 (10%)

Query: 6   SISKLLFVAICLFVYMGLSFG-DFSIVGYSQN-DLTSTERLIQLFESWMLKHNKIYKNID 63
           S+  L F+ I +F       G +F    +  N D  + E+L + FE +++K+ + YK+  
Sbjct: 3   SLLALFFIQIFIFTVTSFDVGANFEDSFFEINIDRNNPEKLYKEFEDFIVKYKRNYKDEI 62

Query: 64  EKIYRFEIFKDNLKYIDETNKK----NNSYWLGLNVFADMSNDEFKEKYT--GSIAGNYT 117
           EK +RF+ F      + + NK      +    G+N F+D+S  E    Y+  G    N  
Sbjct: 63  EKKFRFQQFVATHNRVGKMNKAAKKAGHDTKYGINKFSDLSKKEIHGMYSKFGPPKNNTN 122

Query: 118 TTELSYEEVLNDGDVN-IPEYVDWRQKGA-----VTPVKNQGSCGSCWAFSAVVTIEGII 171
             + + + +     +  +P+  D R K       + P+K Q SC  CW F+A    E  +
Sbjct: 123 VPKFNLKNLRVKRQMEGLPKTFDLRNKKVGGHYIIGPIKTQDSCACCWGFAATAVAEAAL 182

Query: 172 KIRTGNLNEYSEQELLDC-DRRSYGCNGGYPWSALQLVAQYGIHYRNTYPYEGVQR---- 226
            +        SEQE+ DC  +   GCNGG P   L+ + + G+     YP+  V R    
Sbjct: 183 TVHLKKAMNLSEQEVCDCAPKHGPGCNGGDPVDGLEYIKEMGLTGGKEYPF-NVNRSTQL 241

Query: 227 -YCRS----REKGPYAAKTDGVRQVQPYNEGALLYSIANQPVSVVLEAAGKDFQLYRGGI 281
             C S    RE  P       +       +      + N P+SV     G     Y  GI
Sbjct: 242 GRCESEKYDRELNPLELDYYAIDPFNAEYQMTHHLYLLNLPISVAFR-TGASLSSYLSGI 300

Query: 282 F-VGPCGNKVD---HAVAAVGYGP---------NYILIKNSWGTGWGENGYIRIKRG 325
             +  C ++     H+ A VGYG          +Y + +NSW T WG++GY RI RG
Sbjct: 301 LELADCDDEKGGHWHSGAIVGYGTTKNSAGRTVDYWIFRNSWWTDWGDDGYARIVRG 357


>F15D4.4 CE28917   cysteine protease (HINXTON) TR:Q93512
           protein_id:CAB02487.1
          Length = 622

 Score =  110 bits (276), Expect = 1e-24
 Identities = 84/290 (28%), Positives = 127/290 (42%), Gaps = 34/290 (11%)

Query: 64  EKIYRFEIFKDNLKYIDETNKKNNSYWLGLNVFADMSNDEFKEKYTGSIA------GNYT 117
           E + RF ++    K +DE    N  Y LG++ +  MS ++F     G +A         T
Sbjct: 150 EGLKRFNVYSKVKKEVDE---HNIMYELGMSSYK-MSTNQFSVALDGEVAPLTLNLDALT 205

Query: 118 TTELSYEEVLNDGDVNIPE-YVDWRQKGAVTPVKNQGSCGSCWAFSAVVTIEGIIKIRTG 176
            T       ++       E  VDWR    + P+ +Q +CG CWAFS +  IE    I+  
Sbjct: 206 PTATVIPATISSRKKRDTEPTVDWRP--FLKPILDQSTCGGCWAFSMISMIESFFAIQGY 263

Query: 177 NLNEYSEQELLDCDRR--------SYGCNGGYPWSALQLVAQYGIHYRNTYPYEGVQRYC 228
           N +  S Q+LL CD +        + GC GGY   A   +        +  P++     C
Sbjct: 264 NTSSLSVQQLLTCDTKVDSTYGLANVGCKGGYFQIAGSYLEVSAARDASLIPFDLEDTSC 323

Query: 229 RSREKGP-----------YAAKTDGVRQVQPYNEGALLYSIANQPVSVVLEAAGKDFQLY 277
            S    P           Y +      Q+    +  +   +   P++V + AAG D   Y
Sbjct: 324 DSSFFPPVVPTILLFDDGYISGNFTAAQLITMEQN-IEDKVRKGPIAVGM-AAGPDIYKY 381

Query: 278 RGGIFVGPCGNKVDHAVAAVGYGPNYILIKNSWGTGWGENGYIRIKRGTG 327
             G++ G CG  ++HAV  VG+  +Y +I+NSWG  WGE GY R+KR  G
Sbjct: 382 SEGVYDGDCGTIINHAVVIVGFTDDYWIIRNSWGASWGEAGYFRVKRTPG 431


>Y113G7B.15 CE23295    (HINXTON) TR:Q9U2X1 protein_id:CAB54334.1
          Length = 328

 Score =  103 bits (256), Expect = 2e-22
 Identities = 89/312 (28%), Positives = 132/312 (41%), Gaps = 40/312 (12%)

Query: 53  LKHNKIYKNIDEKIYRFEIFKDNLKYIDETNKK----NNSYWLGLNVFADMSNDEFKEKY 108
           + H K Y+   EK  R   F  N + I E N K      +   G N FAD +  E   + 
Sbjct: 1   MHHKKHYRTPAEKDRRLAHFAKNHQKIQELNAKARREGRNVTFGWNKFADKNRQELSARN 60

Query: 109 TGSIAGNYTTTELSYEEVLNDGDVN------------IPEYVDWRQ-----KGAVTPVKN 151
           +     N+T   + Y+     G  N            IP+Y D R         V PVK+
Sbjct: 61  SKIHPKNHTDLPI-YKPRHPRGSRNHHNKRSKRQSGDIPDYFDLRDIYVDGSPVVGPVKD 119

Query: 152 QGSCGSCWAFSAVVTIEGIIKIRTGNLNEYSEQELLDC--DRRSYGCNGGYPWSALQLVA 209
           Q  CG CWAF+     E    + + +    S+QE+ DC     + GC GG P + L++V 
Sbjct: 120 QEQCGCCWAFATTAITEAANTLYSKSFTSLSDQEICDCADSGDTPGCVGGDPRNGLKMVH 179

Query: 210 QYGIHYRNTYPYE----GVQRYCRSREKGP--YAAKTDGVRQVQPYNEGALLYSI-ANQP 262
             G      YPYE         C   EK         +  R  Q Y E  ++ ++  N  
Sbjct: 180 LRGQSSDGDYPYEEYRANTTGNCVGDEKSTVIQPETLNVYRFDQDYAEEDIMENLYLNHI 239

Query: 263 VSVVLEAAGKDFQLYRGGIFVGPCGNKVD----HAVAAVGYGPN-----YILIKNSWGTG 313
            + V    G++F+ Y  G+       ++     H+VA VGYG +     Y L++NSW + 
Sbjct: 240 PTAVYFRVGENFEWYTSGVLQSEDCYQMTPAEWHSVAIVGYGTSDDGVPYWLVRNSWNSD 299

Query: 314 WGENGYIRIKRG 325
           WG +GY++I+RG
Sbjct: 300 WGLHGYVKIRRG 311


>Y71H2AR.2 CE22930    (ST.LOUIS) protein_id:AAK29985.1
          Length = 345

 Score = 93.6 bits (231), Expect = 2e-19
 Identities = 65/213 (30%), Positives = 106/213 (49%), Gaps = 29/213 (13%)

Query: 131 DVNIPEYVDWRQKGAVTPVKNQGSCGSCWAFSAVVTIEGI-IKIRTGNLNEYSEQELLDC 189
           D    E++DWR+KG V PVK+QG C +  AF+   +IE +  K   G L  +SEQ+L+DC
Sbjct: 79  DRTTEEFLDWREKGIVGPVKDQGKCNASHAFAITSSIESMYAKATNGTLLSFSEQQLIDC 138

Query: 190 DRRSY-GCNGGYPWSALQLVAQYGIHYRNTYPY-EGVQRYC-----RSR---EKGPYAAK 239
           + + Y GC   +  +A+  +A +GI     YPY +     C     +S+   +KG  A  
Sbjct: 139 NDQGYKGCEEQFAMNAIGYLATHGIETEADYPYVDKTNEKCTFDSTKSKIHLKKGVVAEG 198

Query: 240 TDGVRQVQPYNEGALLYSIANQPVSVVLEAAGKDFQLYRGGIF---VGPCGNKVD-HAVA 295
            + + +V   N G   +++   P              Y+ GI+   +  C +  +  ++ 
Sbjct: 199 NEVLGKVYVTNYGPAFFTMRAPP----------SLYDYKIGIYNPSIEECTSTHEIRSMV 248

Query: 296 AVGYG----PNYILIKNSWGTGWGENGYIRIKR 324
            VGYG      Y ++K S+GT WGE GY+++ R
Sbjct: 249 IVGYGIEGEQKYWIVKGSFGTSWGEQGYMKLAR 281


>K02E7.10 CE11640   protease (ST.LOUIS) TR:O17255 protein_id:AAB71030.1
          Length = 299

 Score = 93.6 bits (231), Expect = 2e-19
 Identities = 64/219 (29%), Positives = 104/219 (47%), Gaps = 15/219 (6%)

Query: 136 EYVDWRQKGAVTPVKNQGSCGSCWAFSAVVTIEGI-IKIRTGNLNEYSEQELLDCDRRSY 194
           +++DWR+KG V PVK+QG C + +AF+A+  IE +  K   G L  +SEQ+++DC   + 
Sbjct: 82  DFLDWREKGIVGPVKDQGKCNASYAFAAIAAIESMYAKANNGKLLSFSEQQIIDCANFTN 141

Query: 195 GCNGGYP-WSALQLVAQYGIHYRNTYPYEGVQRYCRSREKGPYAAKTDGVRQVQPYNEGA 253
            C        + + + + G+     YPY G +   +                V P  E A
Sbjct: 142 PCQENLENVLSNRFLKENGVGTEADYPYVGKENVGKCEYDSSKMKLRPTYIDVYPNEEWA 201

Query: 254 LLYSIANQPVSVVLEAAGKDFQLYRGGIF---VGPCGNKVD-HAVAAVGYGPN----YIL 305
             + I           +   F  Y+ GI+      CGN  +  ++A VGYG +    Y +
Sbjct: 202 RAH-ITTFGTGYFRMRSPPSFFHYKTGIYNPTKEECGNANEARSLAIVGYGKDGAEKYWI 260

Query: 306 IKNSWGTGWGENGYIRIKRGTGNSYGVCGLYTSSFYPVK 344
           +K S+GT WGE+GY+++ R    +   CG+  S   P+K
Sbjct: 261 VKGSFGTSWGEHGYMKLAR----NVNACGMAESISIPIK 295


>F57F5.1 CE05999   cysteine protease (HINXTON) TR:Q20950
           protein_id:CAB00098.1
          Length = 400

 Score = 91.3 bits (225), Expect = 8e-19
 Identities = 84/315 (26%), Positives = 127/315 (39%), Gaps = 72/315 (22%)

Query: 79  IDETNKKNNSYWLGLNVFADMSNDEFKEKYTGS----IAGNYTTTELSYEEVLNDGDVNI 134
           +D  NK   S+   L  +     D  K++  G+    I   Y   E+++ EV    D  +
Sbjct: 90  VDYVNKVQTSFKAELGSYFSSYPDTIKKQLMGAKMVEIPEEYRVFEMTHPEV---EDAAV 146

Query: 135 PEYVD----WRQKGAVTPVKNQGSCGSCWAFSAVVTIEGIIKIRTG--NLNEYSEQELLD 188
           P+  D    W    +++ +++Q SCGSCWA SA  TI   I I +    +   S  ++  
Sbjct: 147 PDSFDSRTAWPNCPSISKIRDQSSCGSCWAVSAAETISDRICIASNAKTILSISADDINA 206

Query: 189 CDRR--SYGCNGGYPWSALQLVAQ---------------------------YGIHYR--- 216
           C       GCNGGYP  A +   +                            G HY+   
Sbjct: 207 CCGMVCGNGCNGGYPIEAWRHYVKKGYVTGGSYQDKTGCKPYPYPPCEHHVNGTHYKPCP 266

Query: 217 -NTYPYEGVQRYCRSREKGPYAAKTDGVRQVQPYNEGALLYSIANQPVSVVLE------- 268
            N YP +  +R C++     Y          Q  + G   Y+++ +   +  E       
Sbjct: 267 SNMYPTDKCERSCQAGYALTYQ---------QDLHFGQSAYAVSKKAAEIQKEIMTHGPV 317

Query: 269 ----AAGKDFQLYRGGIFVGPCGNKV-DHAVAAVGYGPN----YILIKNSWGTGWGENGY 319
                  +DF+ Y GG++V   G  +  HAV  +G+G +    Y L  NSW   WGENGY
Sbjct: 318 EVAFTVYEDFEHYSGGVYVHTAGASLGGHAVKMLGWGVDNGTPYWLCANSWNEDWGENGY 377

Query: 320 IRIKRGTGNSYGVCG 334
            RI RG  N  G+ G
Sbjct: 378 FRIIRGV-NECGIEG 391


>T10H4.12 CE27590  locus:cpr-3 protease (HINXTON) TR:Q9TW93
           protein_id:CAB61024.2
          Length = 370

 Score = 85.9 bits (211), Expect = 3e-17
 Identities = 67/233 (28%), Positives = 104/233 (43%), Gaps = 42/233 (18%)

Query: 134 IPEYVDWRQK----GAVTPVKNQGSCGSCWAFSAVVTIEGIIKIRTGNLNE--YSEQELL 187
           +P+  D R+K      +  ++NQ +CGSCWAF A   I   + I++    +   S +++L
Sbjct: 92  LPDTFDAREKWPDCNTIKLIRNQATCGSCWAFGAAEVISDRVCIQSNGTQQPVISVEDIL 151

Query: 188 DCDRRS--YGCNGGYPWSALQLVAQYGIHYRNTYPYEGVQRY----------------CR 229
            C   +  YGC GGY   AL+  A  G      Y   G   Y                C+
Sbjct: 152 SCCGTTCGYGCKGGYSIEALRFWASSGAVTGGDYGGHGCMPYSFAPCTKNCPESTTPSCK 211

Query: 230 SREKGPYAAKTDGVRQVQPYNEGALLYSIANQPVSVV--------LEAAGK---DFQLYR 278
           +  +  Y  KT+  ++ + Y   A   +       +         +EA+ K   DF  Y+
Sbjct: 212 TTCQSSY--KTEEYKKDKHYGASAYKVTTTKSVTEIQTEIYHYGPVEASYKVYEDFYHYK 269

Query: 279 GGIFVGPCGNKVD-HAVAAVGYGP----NYILIKNSWGTGWGENGYIRIKRGT 326
            G++    G  V  HAV  +G+G     +Y LI NSWGT +GE G+ +I+RGT
Sbjct: 270 SGVYHYTSGKLVGGHAVKIIGWGVENGVDYWLIANSWGTSFGEKGFFKIRRGT 322


>C52E4.1 CE08943  locus:cpr-1 cathepsin-like cysteine protease (HINXTON)
           TR:Q18783 protein_id:CAB01410.1
          Length = 340

 Score = 85.5 bits (210), Expect = 4e-17
 Identities = 73/252 (28%), Positives = 102/252 (39%), Gaps = 36/252 (14%)

Query: 107 KYTGSIAGNYTTTELSYEEVLNDGDVNIPEYVDWRQKGAVTPVKNQGSCGSCWAFSAVVT 166
           KY  + +     TE   E VL            W +  ++  +++Q +CGSCWAF A   
Sbjct: 75  KYAAAHSDEIRATE--QEVVLASVPATFDSRTQWSECKSIKLIRDQATCGSCWAFGAAEM 132

Query: 167 IEGIIKIRTGNLNE--YSEQELLDCDRRSYG--CNGGYPWSALQLVAQYGIHYRNTYPYE 222
           I     I T    +   S  +LL C   S G  C GGYP  AL+     G+     Y   
Sbjct: 133 ISDRTCIETKGAQQPIISPDDLLSCCGSSCGNGCEGGYPIQALRWWDSKGVVTGGDYHGA 192

Query: 223 GVQRY---------------------CRSREKGPYAA-KTDGVRQVQ-PYNEGALLYSI- 258
           G + Y                     C+S     YA  K  GV     P N  ++   I 
Sbjct: 193 GCKPYPIAPCTSGNCPESKTPSCSMSCQSGYSTAYAKDKHFGVSAYAVPKNAASIQAEIY 252

Query: 259 ANQPVSVVLEAAGKDFQLYRGGIFVGPCGNKVD-HAVAAVGYGPN----YILIKNSWGTG 313
           AN PV        +DF  Y+ G++    G  +  HA+  +G+G      Y L+ NSWG  
Sbjct: 253 ANGPVEAAFSVY-EDFYKYKSGVYKHTAGKYLGGHAIKIIGWGTESGSPYWLVANSWGVN 311

Query: 314 WGENGYIRIKRG 325
           WGE+G+ +I RG
Sbjct: 312 WGESGFFKIYRG 323


>F26E4.3 CE17714   cysteine protease (HINXTON) TR:P90850
           protein_id:CAB03007.1
          Length = 491

 Score = 80.5 bits (197), Expect = 1e-15
 Identities = 66/233 (28%), Positives = 98/233 (41%), Gaps = 42/233 (18%)

Query: 134 IPEYVDWRQKGA--VTPVKNQGSCGSCWAFSAV-VTIEGIIKIRTGNLNE-YSEQELLDC 189
           +PE+ D R K    + PV +QG CGS W+ S   ++ + +  I  G +N   S Q+LL C
Sbjct: 223 LPEHFDARDKWGPLIHPVADQGDCGSSWSVSTTAISSDRLAIISEGRINSTLSSQQLLSC 282

Query: 190 DR-RSYGCNGGYPWSALQLVAQYGIHYRNTYPYEGVQRY-------------------CR 229
           ++ R  GC GGY   A   + + G+   + YPY   Q                     C 
Sbjct: 283 NQHRQKGCEGGYLDRAWWYIRKLGVVGDHCYPYVSGQSREPGHCLIPKRDYTNRQGLRCP 342

Query: 230 SREKGPYAAKTDGVRQVQPYNEGALLYSIANQPVSVVLEAAGKDFQLYRGGIFV------ 283
           S  +   A K     +V    E      + N PV        +DF +Y GG++       
Sbjct: 343 SGSQDSTAFKMTPPYKVSSREEDIQTELMTNGPVQATF-VVHEDFFMYAGGVYQHSDLAA 401

Query: 284 ---GPCGNKVDHAVAAVGYGPN--------YILIKNSWGTGWGENGYIRIKRG 325
                   +  H+V  +G+G +        Y L  NSWGT WGE+GY ++ RG
Sbjct: 402 QKGASSVAEGYHSVRVLGWGVDHSTGKPIKYWLCANSWGTQWGEDGYFKVLRG 454


>W07B8.4 CE14680   thiol protease (ST.LOUIS) TR:O16288 protein_id:AAB65345.1
          Length = 335

 Score = 78.2 bits (191), Expect = 7e-15
 Identities = 71/260 (27%), Positives = 108/260 (41%), Gaps = 60/260 (23%)

Query: 133 NIPEYVD----WRQKGAVTPVKNQGSCGSCWAFSAVVTIEGIIKIRT-GNLNE-YSEQEL 186
           +IP+  D    W Q  +V  +++Q  CGSCWA +A   I     I + G++N   S +++
Sbjct: 72  SIPDSYDVRDHWPQCISVNNIRDQSHCGSCWAVAAAEAISDRTCIASNGDVNTLLSAEDI 131

Query: 187 LDCDRRSY----GCNGGYPWSALQLVAQYGIHYRNTYPYEGVQRYCRSREKGPYAAKTDG 242
           L C    +    GC GGYP  A +   + G+    ++     Q  C+     P     DG
Sbjct: 132 LTCCTGKFNCGDGCEGGYPIQAWRYWVKNGLVTGGSFE---SQYGCKPYSIAPCGETIDG 188

Query: 243 VRQVQ-----------------------PYNE----GALLYSIANQPVSVVLEAAG---- 271
           V   +                       PY++    GA  Y+I      +  E       
Sbjct: 189 VTWPECPMKISDTPKCEHHCTGNNSYPIPYDQDKHFGASAYAIGRSAKQIQTEILAHGPV 248

Query: 272 -------KDFQLYRGGIFVGPCGNKV-DHAVAAVGYGPN----YILIKNSWGTGWGENGY 319
                  +DF LY+ GI+    G ++  HAV  +G+G +    Y L  NSW T WGE GY
Sbjct: 249 EVGFIVYEDFYLYKTGIYTHVAGGELGGHAVKMLGWGVDNGTPYWLAANSWNTVWGEKGY 308

Query: 320 IRIKRGTGNSYGVCGLYTSS 339
            RI RG       CG+ +++
Sbjct: 309 FRILRGVDE----CGIESAA 324


>C32B5.7 CE08515   cathepsin-like peptidase (ST.LOUIS) TR:P91111
           protein_id:AAB37963.1
          Length = 250

 Score = 73.9 bits (180), Expect = 1e-13
 Identities = 57/189 (30%), Positives = 87/189 (45%), Gaps = 22/189 (11%)

Query: 137 YVDWRQKGAVTPVKNQGSCGSCWAFSAVVTIEGIIKIRTGNLNEYSEQELLDCDRRSYGC 196
           ++DWR +G V PVK+QG+C + +AF+A+  IE +  I  G L  +SEQ+++DC     GC
Sbjct: 71  FLDWRDEGVVGPVKDQGNCNASYAFAAISAIESMYAIANGQLLSFSEQQIIDC---LGGC 127

Query: 197 N-GGYPWSALQLVAQYGIHYRNTYPYEGVQRYCRSREKGPYAAKTDGVRQVQPY---NEG 252
                P  A+  + + GI     YP+ G     +  EK  Y +K   +     Y   +E 
Sbjct: 128 AIESDPMMAMTYLERKGIETYTDYPFVG-----KKNEKCEYDSKKAYLILDDTYDMSDES 182

Query: 253 ALLYSIANQPVSVVLEAAGKDFQLYRGGIFVGPC-----GNKVDHAVAAVGY----GPNY 303
             L  I  +   +        F  Y+ GI+  P            A+  VGY    G NY
Sbjct: 183 LALVFIDERGPGLFTMNTPPSFFNYKSGIY-NPTEEECKSTNEKRALTIVGYGNDKGQNY 241

Query: 304 ILIKNSWGT 312
            ++K S+GT
Sbjct: 242 WIVKGSFGT 250


>Y71H2AM.3 CE26272    (ST.LOUIS) protein_id:AAK29976.1
          Length = 716

 Score = 71.2 bits (173), Expect = 9e-13
 Identities = 42/116 (36%), Positives = 60/116 (51%), Gaps = 9/116 (7%)

Query: 136 EYVDWRQKGAVTPVKNQGSCGSCWAFSAVVTIEGI-IKIRTGNLNEYSEQELLDCDRRSY 194
           E++DWR KG V PVK+QG C +  AF+   +IE +  K   G+L  +SEQ+L+DCD   +
Sbjct: 84  EFLDWRDKGIVGPVKDQGKCNASHAFAISSSIESMYAKATNGSLLSFSEQQLIDCDDHGF 143

Query: 195 -GCNGGYPWSALQLVAQYGIHYRNTYPYEGVQRYCRSREKGPYAAKTDGVRQVQPY 249
            GC      +A+     +GI     YPY G       +E G  + +T G   V  Y
Sbjct: 144 KGCEEQPAINAVSYFIFHGIETEADYPYAG-------KENGKLSNETQGKELVTNY 192


>F32B5.8 CE09855   cysteine proteinase (ST.LOUIS) TR:O01850
           protein_id:AAB54210.1
          Length = 427

 Score = 69.7 bits (169), Expect = 2e-12
 Identities = 58/217 (26%), Positives = 91/217 (41%), Gaps = 28/217 (12%)

Query: 133 NIPEYVDWRQKGAVTPV---KNQGS---CGSCWAFSAVVTIEGIIKIRTGNL---NEYSE 183
           ++P+  DWR    +      +NQ     CGSCWAF A   +   I I+  N       S 
Sbjct: 185 DLPKTWDWRDANGINYASADRNQHIPQYCGSCWAFGATSALADRINIKRKNAWPQAYLSV 244

Query: 184 QELLDCDRRSYGCNGGYPWSALQLVAQYGIHYRNTYPYEGVQRYC----RSREKGP---Y 236
           QE++DC        GG P    +   ++GI +     Y+     C    R     P   +
Sbjct: 245 QEVIDCSGAGTCVMGGEPGGVYKYAHEHGIPHETCNNYQARDGKCDPYNRCGSCWPGECF 304

Query: 237 AAKTDGVRQVQPYN-----EGALLYSIANQPVSVVLEAAGKDFQLYRGGIFVGPCGNKVD 291
           + K   + +V  Y      E          P++  + AA K F+ Y GGI+       +D
Sbjct: 305 SIKNYTLYKVSEYGTVHGYEKMKAEIYHKGPIACGI-AATKAFETYAGGIYKEVTDEDID 363

Query: 292 HAVAAVGYGPN------YILIKNSWGTGWGENGYIRI 322
           H ++  G+G +      Y + +NSWG  WGE+G+ +I
Sbjct: 364 HIISVHGWGVDHESGVEYWIGRNSWGEPWGEHGWFKI 400


  Database: /data_2/jason/blastdb/wormpep62
    Posted date:  Sep 3, 2001  2:17 PM
  Number of letters in database: 8,813,425
  Number of sequences in database:  20,085
  
Lambda     K      H
   0.318    0.138    0.428 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6611257
Number of Sequences: 20085
Number of extensions: 311359
Number of successful extensions: 788
Number of sequences better than 1.0e-10: 19
Number of HSP's better than  0.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 741
Number of HSP's gapped (non-prelim): 23
length of query: 345
length of database: 8,813,425
effective HSP length: 44
effective length of query: 301
effective length of database: 7,929,685
effective search space: 2386835185
effective search space used: 2386835185
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 156 (64.7 bits)
