## Source Information for ens_35_segdup_sanger

### Description

Segmental duplication dataset compiled by seeking homologies within the reference sequence using SSAHA2 and SEGMENT (unpublished) software.

The data were kindly provided by Nikolai Ivanov and Tony Cox at The Wellcome Trust Sanger Institute.

A region was considered a low copy repeat (LCR) if it had at least 90% identity to a different region of at least 3kb of the same chromosome.

Reference:
Ning Z, Cox AJ, Mullikin JC. (2001) SSAHA: a fast search method for large DNA databases. Genome Res. 2001 Oct;11(10):1725-9.

### Key

Orientation |  |
|  | Red: Pair members in direct orientation
|  | Green: Pair members in inverted orientation
|  | Blue: Pair members on different chromosomes
% Identity |  |
|  | Over 99% identity
|  | 97 - 99% identity
|  | 95 - 97% identity
|  | Less than 95% identity
Spacing |  |
|  | Less than 100Kb apart
|  | 100Kb - 1Mb apart
|  | 1 - 5Mb apart
|  | 5 - 10Mb apart
|  | More than 10Mb apart