Revision history for Bio-DOOP-DOOP
0.22    2007/05/22
        New method in the Mofext.pm. Now you can use previously defined
        tmp file for the mofext search. Time save option.
0.21    2007/05/21
        Fix the Mofext.pm, now the installer won't give error messages
0.20    2007/05/14
        Fix a Makefile.pm error. Now no problem at the installation
0.19    2007/05/10
        Tha database have been changed, so the modules also changed. New
        methods not added, but some old stuff have been removed.
0.18    2007/05/09
        Modification in the Motif module. Correct the get_seqfeature_ids method
0.17    2007/04/24
        Changes in the Sequence objects
0.16    2007/04/12
        The Graphics::Feature module fixed, but Endre found some bug :-(
0.15    2007/04/12
        The ClusterSubset class can manage the chordata database
0.14    2007/04/01
        New module Util::Run::Fuzznuc.
	New modification in Graphics::Feature, because it is not correct.
0.13    2007/03/28
        The motifs in the Graphics::Feature module drawed incorrectly. Now fixed. Maybe
0.12    2007/03/19
        The motifs in the Graphics::Feature module drawed correctly
        The ClusterSubset module get_all_seqs method returns sorted sequences
0.11    2007/03/14
        The motifs is the Graphics::Feature module drawed reverse order. Fixed
        The first sequence in the graphics is a reference species
        The UTR doesn't hide the species name
        If no have motifs the Graphics::Feature module also create picture
0.10    2007/02/15
        Add new object (Util::Run::Admin) to handle the running processes
0.09    2007/02/10
        Add new methods to Cluster.pm (get_subset_by_type, get_availables_types)
        Add new methods to Util::Run::Mofext object (run_background, get_results_from_file)
        Now you can run mofext in the background.
0.08    2007/01/31
        Add new method for Sequence.pm (get_raw_seq)
        Fixed the motif drawing in Graphics::Feature module
        Fixed the get_fasta method (add a new line to the end :-))
        Add new method for SequenceFeature.pm (length)
        Add new object (Util::Run::Mofext)
        Fixed the get_subset_id methods in Bio::DOOP::Motif
        Add more warning messages to the Cluster and ClusterSubset objects
0.07    2007/01/12
        Add more comment for the documentation
        Remove hungarian comments
0.06    2007/01/05
        New method in Cluster class: get_ref_seq
        Carp uses for module warnings
        Some methods add warning messages if has an error in the MySQL database
0.05    2007/01/03
	Search module recoding. The get_cluster_by_* methods
	not give back redundant elements
0.04    2006/12/20
	Bug fixes. New method in Cluster class: get_orig_subset.
0.03    2006/12/13
        Advanced color handling in the Graphics::Feature module
        Full access to the TSS annotation
0.02    2006/12/06
        First version with correct CPAN install
0.01    2006/12/04
        First version, released on an unsuspecting world.

