Gene: One to many assoication, use getGeneCollection to get a collection of associated Gene.
Protein: One to many assoication, use getProteinCollection to get a collection of associated Protein.
Pathway: One to many assoication, use getPathwayCollection to get a collection of associated Pathway.
Tissue: One to many assoication, use getTissueCollection to get a collection of associated Tissue.
Chromosome: One to many assoication, use getChromosomeCollection to get a collection of associated Chromosome.
Clone: One to many assoication, use getCloneCollection to get a collection of associated Clone.
End Associations and related methods
CaCORE::CaBIO::Agent - Perl extension for Agent.
The CaCORE::CaBIO::bean::Agent is a Perl object representation of the
caBIO generic object.
A therapeutic agent (drug, intervention therapy) used in a clinical trail protocol.
The following are all the attributes of the Agent object and their data types:
isCMAPAgent boolean
comment string
source string
NSCNumber long
name string
EVSId string
id long
End Attributes
Note: Although you can also use the corresponding setter methods to set the
attribute values, it is not recommended to do so unless you absolutely have
to change the object's attributes.
The following are all the objects that are associated with the Agent:
Target: One to many assoication, use getTargetCollection to get a collection of associated Target.
ClinicalTrialProtocol: One to many assoication, use getClinicalTrialProtocolCollection to get a collection of associated ClinicalTrialProtocol.
End Associations and related methods
CaCORE::CaBIO::Chromosome - Perl extension for Chromosome.
The CaCORE::CaBIO::bean::Chromosome is a Perl object representation of the
caBIO generic object.
An object representing a specific chromosome for a specific taxon; provides access to all known genes contained in the chromosome and to the taxon.
The following are all the attributes of the Chromosome object and their data types:
id long
number string
End Attributes
Note: Although you can also use the corresponding setter methods to set the
attribute values, it is not recommended to do so unless you absolutely have
to change the object's attributes.
The following are all the objects that are associated with the Chromosome:
Taxon: Many to one assoication, use getTaxon to get the associated Taxon.
Gene: One to many assoication, use getGeneCollection to get a collection of associated Gene.
Location: One to many assoication, use getLocationCollection to get a collection of associated Location.
End Associations and related methods
CaCORE::CaBIO::Gene - Perl extension for Gene.
The CaCORE::CaBIO::bean::Gene is a Perl object representation of the
caBIO generic object.
Gene objects are the effective portal to most of the genomic information provided by the caBIO data services; organs, diseases, chromosomes, pathways, sequence data, and expression experiments are among the many objects accessible via a gene.
The following are all the attributes of the Gene object and their data types:
id long
clusterId long
symbol string
fullName string
End Attributes
Note: Although you can also use the corresponding setter methods to set the
attribute values, it is not recommended to do so unless you absolutely have
to change the object's attributes.
The following are all the objects that are associated with the Gene:
GeneOntology: One to many assoication, use getGeneOntologyCollection to get a collection of associated GeneOntology.
GeneAlias: One to many assoication, use getGeneAliasCollection to get a collection of associated GeneAlias.
Protein: One to many assoication, use getProteinCollection to get a collection of associated Protein.
ExpressionFeature: One to many assoication, use getExpressionFeatureCollection to get a collection of associated ExpressionFeature.
Pathway: One to many assoication, use getPathwayCollection to get a collection of associated Pathway.
OrganOntology: One to many assoication, use getOrganOntologyCollection to get a collection of associated OrganOntology.
Taxon: Many to one assoication, use getTaxon to get the associated Taxon.
Library: One to many assoication, use getLibraryCollection to get a collection of associated Library.
GeneRelativeLocation: One to many assoication, use getGeneRelativeLocationCollection to get a collection of associated GeneRelativeLocation.
Chromosome: Many to one assoication, use getChromosome to get the associated Chromosome.
DatabaseCrossReference: One to many assoication, use getDatabaseCrossReferenceCollection to get a collection of associated DatabaseCrossReference.
GenericReporter: One to many assoication, use getGenericReporterCollection to get a collection of associated GenericReporter.
Target: One to many assoication, use getTargetCollection to get a collection of associated Target.
Histopathology: One to many assoication, use getHistopathologyCollection to get a collection of associated Histopathology.
Location: One to many assoication, use getLocationCollection to get a collection of associated Location.
NucleicAcidSequence: One to many assoication, use getNucleicAcidSequenceCollection to get a collection of associated NucleicAcidSequence.
HomologousAssociation: One to many assoication, use getHomologousAssociationCollection to get a collection of associated HomologousAssociation.
End Associations and related methods
CaCORE::CaBIO::Vocabulary - Perl extension for Vocabulary.
The CaCORE::CaBIO::bean::Vocabulary is a Perl object representation of the
caBIO generic object.
The object describes the vocabulary.
The following are all the attributes of the Vocabulary object and their data types:
generalTerm string
coreTerm string
id long
End Attributes
Note: Although you can also use the corresponding setter methods to set the
attribute values, it is not recommended to do so unless you absolutely have
to change the object's attributes.
The following are all the objects that are associated with the Vocabulary:
Anomaly: One to many assoication, use getAnomalyCollection to get a collection of associated Anomaly.
End Associations and related methods
CaCORE::CaBIO::Protocol - Perl extension for Protocol.
The CaCORE::CaBIO::bean::Protocol is a Perl object representation of the
caBIO generic object.
An object representation of the protocol used in assembling a clone library.
The following are all the attributes of the Protocol object and their data types:
type string
description string
name string
id long
End Attributes
Note: Although you can also use the corresponding setter methods to set the
attribute values, it is not recommended to do so unless you absolutely have
to change the object's attributes.
The following are all the objects that are associated with the Protocol:
Library: One to many assoication, use getLibraryCollection to get a collection of associated Library.
Tissue: One to many assoication, use getTissueCollection to get a collection of associated Tissue.
End Associations and related methods
CaCORE::CaBIO::Tissue - Perl extension for Tissue.
The CaCORE::CaBIO::bean::Tissue is a Perl object representation of the
caBIO generic object.
A group of similar cells united to perform a specific function.
The following are all the attributes of the Tissue object and their data types:
type string
cellType string
histology string
id long
sex string
cellLine string
supplier string
developmentalStage string
description string
organ string
name string
End Attributes
Note: Although you can also use the corresponding setter methods to set the
attribute values, it is not recommended to do so unless you absolutely have
to change the object's attributes.
The following are all the objects that are associated with the Tissue:
Protocol: Many to one assoication, use getProtocol to get the associated Protocol.
Taxon: Many to one assoication, use getTaxon to get the associated Taxon.
Library: One to many assoication, use getLibraryCollection to get a collection of associated Library.
End Associations and related methods
CaCORE::CaBIO::SNP - Perl extension for SNP.
The CaCORE::CaBIO::bean::SNP is a Perl object representation of the
caBIO generic object.
An object representing a Single Nucleotide Polymorphism; provides access to the clones and the trace files from which it was identified, the two most common substitutions at that position, the offset of the SNP in the parent sequence, and a confidence score.
The following are all the attributes of the SNP object and their data types:
alleleA string
validationStatus string
alleleB string
DBSNPID string
id long
End Attributes
Note: Although you can also use the corresponding setter methods to set the
attribute values, it is not recommended to do so unless you absolutely have
to change the object's attributes.
The following are all the objects that are associated with the SNP:
DatabaseCrossReference: One to many assoication, use getDatabaseCrossReferenceCollection to get a collection of associated DatabaseCrossReference.
PopulationFrequency: One to many assoication, use getPopulationFrequencyCollection to get a collection of associated PopulationFrequency.
Location: One to many assoication, use getLocationCollection to get a collection of associated Location.
GeneRelativeLocation: One to many assoication, use getGeneRelativeLocationCollection to get a collection of associated GeneRelativeLocation.
End Associations and related methods
CaCORE::CaBIO::GeneAlias - Perl extension for GeneAlias.
The CaCORE::CaBIO::bean::GeneAlias is a Perl object representation of the
caBIO generic object.
This object describes the gene alias.
The following are all the attributes of the GeneAlias object and their data types:
name string
type string
id long
End Attributes
Note: Although you can also use the corresponding setter methods to set the
attribute values, it is not recommended to do so unless you absolutely have
to change the object's attributes.
The following are all the objects that are associated with the GeneAlias:
Gene: One to many assoication, use getGeneCollection to get a collection of associated Gene.
End Associations and related methods
CaCORE::CaBIO::Library - Perl extension for Library.
The CaCORE::CaBIO::bean::Library is a Perl object representation of the
caBIO generic object.
An object representing a CGAP library; provides access to information about: the tissue sample and its method of preparation, the library protocol that was used, the clones contained in the library, and the sequence information derived from the library.
The following are all the attributes of the Library object and their data types:
type string
rsite1 string
creationDate dateTime
labHost string
cloneVector string
id long
clonesToDate long
sequencesToDate long
keyword string
description string
cloneProducer string
rsite2 string
cloneVectorType string
uniGeneId long
name string
End Attributes
Note: Although you can also use the corresponding setter methods to set the
attribute values, it is not recommended to do so unless you absolutely have
to change the object's attributes.
The following are all the objects that are associated with the Library:
Protocol: Many to one assoication, use getProtocol to get the associated Protocol.
Gene: One to many assoication, use getGeneCollection to get a collection of associated Gene.
Clone: One to many assoication, use getCloneCollection to get a collection of associated Clone.
Tissue: Many to one assoication, use getTissue to get the associated Tissue.
Histopathology: One to many assoication, use getHistopathologyCollection to get a collection of associated Histopathology.
End Associations and related methods
CaCORE::CaBIO::Clone - Perl extension for Clone.
The CaCORE::CaBIO::bean::Clone is a Perl object representation of the
caBIO generic object.
An object used to hold information pertaining to I.M.A.G.E. clones; provides access to sequence information, associated trace files, and the clone's library.
The following are all the attributes of the Clone object and their data types:
type string
insertSize long
name string
id long
End Attributes
Note: Although you can also use the corresponding setter methods to set the
attribute values, it is not recommended to do so unless you absolutely have
to change the object's attributes.
The following are all the objects that are associated with the Clone:
Taxon: One to many assoication, use getTaxonCollection to get a collection of associated Taxon.
CloneRelativeLocation: One to many assoication, use getCloneRelativeLocationCollection to get a collection of associated CloneRelativeLocation.
Library: Many to one assoication, use getLibrary to get the associated Library.
NucleicAcidSequence: One to many assoication, use getNucleicAcidSequenceCollection to get a collection of associated NucleicAcidSequence.
End Associations and related methods
CaCORE::CaBIO::Target - Perl extension for Target.
The CaCORE::CaBIO::bean::Target is a Perl object representation of the
caBIO generic object.
A gene thought to be at the root of a disease etiology, and which is targeted for therapeutic intervention in a clinical trial.
The following are all the attributes of the Target object and their data types:
type string
name string
id long
End Attributes
Note: Although you can also use the corresponding setter methods to set the
attribute values, it is not recommended to do so unless you absolutely have
to change the object's attributes.
The following are all the objects that are associated with the Target:
Gene: One to many assoication, use getGeneCollection to get a collection of associated Gene.
Agent: One to many assoication, use getAgentCollection to get a collection of associated Agent.
Anomaly: One to many assoication, use getAnomalyCollection to get a collection of associated Anomaly.
End Associations and related methods
CaCORE::CaBIO::Location - Perl extension for Location.
The CaCORE::CaBIO::bean::Location is a Perl object representation of the
caBIO generic object.
The following are all the attributes of the Location object and their data types:
id long
End Attributes
Note: Although you can also use the corresponding setter methods to set the
attribute values, it is not recommended to do so unless you absolutely have
to change the object's attributes.
The following are all the objects that are associated with the Location:
SNP: Many to one assoication, use getSNP to get the associated SNP.
Gene: Many to one assoication, use getGene to get the associated Gene.
NucleicAcidSequence: Many to one assoication, use getNucleicAcidSequence to get the associated NucleicAcidSequence.
Chromosome: Many to one assoication, use getChromosome to get the associated Chromosome.
End Associations and related methods
CaCORE::CaBIO::CloneRelativeLocation - Perl extension for CloneRelativeLocation.
The CaCORE::CaBIO::bean::CloneRelativeLocation is a Perl object representation of the
caBIO generic object.
The following are all the attributes of the CloneRelativeLocation object and their data types:
type string
id long
End Attributes
Note: Although you can also use the corresponding setter methods to set the
attribute values, it is not recommended to do so unless you absolutely have
to change the object's attributes.
The following are all the objects that are associated with the CloneRelativeLocation:
Clone: Many to one assoication, use getClone to get the associated Clone.
NucleicAcidSequence: Many to one assoication, use getNucleicAcidSequence to get the associated NucleicAcidSequence.
End Associations and related methods
CaCORE::CaBIO::NucleicAcidSequence - Perl extension for NucleicAcidSequence.
The CaCORE::CaBIO::bean::NucleicAcidSequence is a Perl object representation of the
caBIO generic object.
An object representation of a nucleic acid sequence; provides access to the clones from which it was derived.
The following are all the attributes of the NucleicAcidSequence object and their data types:
value string
type string
length long
accessionNumber string
id long
accessionNumberVersion string
End Attributes
Note: Although you can also use the corresponding setter methods to set the
attribute values, it is not recommended to do so unless you absolutely have
to change the object's attributes.
The following are all the objects that are associated with the NucleicAcidSequence:
Gene: One to many assoication, use getGeneCollection to get a collection of associated Gene.
DatabaseCrossReference: One to many assoication, use getDatabaseCrossReferenceCollection to get a collection of associated DatabaseCrossReference.
Location: Many to one assoication, use getLocation to get the associated Location.
CloneRelativeLocation: Many to one assoication, use getCloneRelativeLocation to get the associated CloneRelativeLocation.
End Associations and related methods
CaCORE::CaBIO::DiseaseOntology - Perl extension for DiseaseOntology.
The CaCORE::CaBIO::bean::DiseaseOntology is a Perl object representation of the
caBIO generic object.
Disease objects specify a disease name and ID; disease objects also provide access to: ontological relations to other diseases; clinical trial protocols treating the disease; and specific histologies associated with instances of the disease.
The following are all the attributes of the DiseaseOntology object and their data types:
name string
id long
End Attributes
Note: Although you can also use the corresponding setter methods to set the
attribute values, it is not recommended to do so unless you absolutely have
to change the object's attributes.
The following are all the objects that are associated with the DiseaseOntology:
ParentDiseaseOntologyRelationship: One to many assoication, use getParentDiseaseOntologyRelationshipCollection to get a collection of associated ParentDiseaseOntologyRelationship.
ChildDiseaseOntologyRelationship: One to many assoication, use getChildDiseaseOntologyRelationshipCollection to get a collection of associated ChildDiseaseOntologyRelationship.
Histopathology: One to many assoication, use getHistopathologyCollection to get a collection of associated Histopathology.
ClinicalTrialProtocol: One to many assoication, use getClinicalTrialProtocolCollection to get a collection of associated ClinicalTrialProtocol.
End Associations and related methods
CaCORE::CaBIO::ClinicalTrialProtocol - Perl extension for ClinicalTrialProtocol.
The CaCORE::CaBIO::bean::ClinicalTrialProtocol is a Perl object representation of the
caBIO generic object.
The protocol associated with a clinical trial; organizes administrative information about the trial such as Organization ID, participants, phase, etc., and provides access to the administered Agents.
The following are all the attributes of the ClinicalTrialProtocol object and their data types:
currentStatus string
participationType string
treatmentFlag string
leadOrganizationId string
NIHAdminCode string
title string
id long
PDQIdentifier string
documentNumber string
leadOrganizationName string
phase string
PIName string
currentStatusDate dateTime
End Attributes
Note: Although you can also use the corresponding setter methods to set the
attribute values, it is not recommended to do so unless you absolutely have
to change the object's attributes.
The following are all the objects that are associated with the ClinicalTrialProtocol:
Agent: One to many assoication, use getAgentCollection to get a collection of associated Agent.
ProtocolAssociation: One to many assoication, use getProtocolAssociationCollection to get a collection of associated ProtocolAssociation.
DiseaseOntology: One to many assoication, use getDiseaseOntologyCollection to get a collection of associated DiseaseOntology.
Histopathology: One to many assoication, use getHistopathologyCollection to get a collection of associated Histopathology.
End Associations and related methods
CaCORE::CaBIO::ProtocolAssociation - Perl extension for ProtocolAssociation.
The CaCORE::CaBIO::bean::ProtocolAssociation is a Perl object representation of the
caBIO generic object.
An association class relating between Clinical Trial Protocols to Diseases.
The following are all the attributes of the ProtocolAssociation object and their data types:
diseaseSubCategory string
CTEPNAME string
IMTCODE long
id long
diseaseCategory string
End Attributes
Note: Although you can also use the corresponding setter methods to set the
attribute values, it is not recommended to do so unless you absolutely have
to change the object's attributes.
The following are all the objects that are associated with the ProtocolAssociation:
DiseaseOntology: Many to one assoication, use getDiseaseOntology to get the associated DiseaseOntology.
ClinicalTrialProtocol: Many to one assoication, use getClinicalTrialProtocol to get the associated ClinicalTrialProtocol.
End Associations and related methods
CaCORE::CaBIO::Pathway - Perl extension for Pathway.
The CaCORE::CaBIO::bean::Pathway is a Perl object representation of the
caBIO generic object.
An object representation of a molecular/cellular pathway compiled by BioCarta. Pathways are associated with specific Taxon objects, and contain multiple Gene objects, which may be Targets for treatment.
The following are all the attributes of the Pathway object and their data types:
description string
diagram string
name string
id long
displayValue string
End Attributes
Note: Although you can also use the corresponding setter methods to set the
attribute values, it is not recommended to do so unless you absolutely have
to change the object's attributes.
The following are all the objects that are associated with the Pathway:
Gene: One to many assoication, use getGeneCollection to get a collection of associated Gene.
Histopathology: One to many assoication, use getHistopathologyCollection to get a collection of associated Histopathology.
Taxon: Many to one assoication, use getTaxon to get the associated Taxon.
End Associations and related methods
CaCORE::CaBIO::OrganOntology - Perl extension for OrganOntology.
The CaCORE::CaBIO::bean::OrganOntology is a Perl object representation of the
caBIO generic object.
A representation of an organ whose name occurs in a controlled vocabulary; provides access to any Histopathology objects for the organ, and, because it is $quot;ontolog-able,$quot; provides access to its ancestral and descendant terms in the vocabulary.
The following are all the attributes of the OrganOntology object and their data types:
name string
id long
End Attributes
Note: Although you can also use the corresponding setter methods to set the
attribute values, it is not recommended to do so unless you absolutely have
to change the object's attributes.
The following are all the objects that are associated with the OrganOntology:
ParentOrganOntologyRelationship: One to many assoication, use getParentOrganOntologyRelationshipCollection to get a collection of associated ParentOrganOntologyRelationship.
Gene: One to many assoication, use getGeneCollection to get a collection of associated Gene.
ExpressionFeature: One to many assoication, use getExpressionFeatureCollection to get a collection of associated ExpressionFeature.
Histopathology: One to many assoication, use getHistopathologyCollection to get a collection of associated Histopathology.
ChildOrganOntologyRelationship: One to many assoication, use getChildOrganOntologyRelationshipCollection to get a collection of associated ChildOrganOntologyRelationship.
Anomaly: One to many assoication, use getAnomalyCollection to get a collection of associated Anomaly.
End Associations and related methods
CaCORE::CaBIO::OrganOntologyRelationship - Perl extension for OrganOntologyRelationship.
The CaCORE::CaBIO::bean::OrganOntologyRelationship is a Perl object representation of the
caBIO generic object.
Organ relationship object describes relationships among organs.
The following are all the attributes of the OrganOntologyRelationship object and their data types:
type string
id long
End Attributes
Note: Although you can also use the corresponding setter methods to set the
attribute values, it is not recommended to do so unless you absolutely have
to change the object's attributes.
The following are all the objects that are associated with the OrganOntologyRelationship:
ChildOrganOntology: Many to one assoication, use getChildOrganOntology to get the associated ChildOrganOntology.
ParentOrganOntology: Many to one assoication, use getParentOrganOntology to get the associated ParentOrganOntology.
End Associations and related methods
CaCORE::CaBIO::Histopathology - Perl extension for Histopathology.
The CaCORE::CaBIO::bean::Histopathology is a Perl object representation of the
caBIO generic object.
An object representing anatomical changes in a diseased tissue sample associated with an expression experiment; captures the relationship between organ and disease.
The following are all the attributes of the Histopathology object and their data types:
comments string
relationalOperation string
tumorIncidenceRate float
ageOfOnset string
id long
microscopicDescription string
grossDescription string
survivalInfo string
End Attributes
Note: Although you can also use the corresponding setter methods to set the
attribute values, it is not recommended to do so unless you absolutely have
to change the object's attributes.
The following are all the objects that are associated with the Histopathology:
Metastasis: One to many assoication, use getMetastasisCollection to get a collection of associated Metastasis.
Gene: One to many assoication, use getGeneCollection to get a collection of associated Gene.
Library: One to many assoication, use getLibraryCollection to get a collection of associated Library.
DiseaseOntology: Many to one assoication, use getDiseaseOntology to get the associated DiseaseOntology.
OrganOntology: Many to one assoication, use getOrganOntology to get the associated OrganOntology.
ClinicalTrialProtocol: One to many assoication, use getClinicalTrialProtocolCollection to get a collection of associated ClinicalTrialProtocol.
Anomaly: One to many assoication, use getAnomalyCollection to get a collection of associated Anomaly.
End Associations and related methods
CaCORE::CaBIO::GeneOntology - Perl extension for GeneOntology.
The CaCORE::CaBIO::bean::GeneOntology is a Perl object representation of the
caBIO generic object.
An object providing entry to a Gene object's position in the Gene Ontology Consortium's controlled vocabularies, as recorded by LocusLink; provides access to gene objects corresponding to the ontological term, as well as to ancestor and descendant terms in the ontology tree.
The following are all the attributes of the GeneOntology object and their data types:
name string
id long
End Attributes
Note: Although you can also use the corresponding setter methods to set the
attribute values, it is not recommended to do so unless you absolutely have
to change the object's attributes.
The following are all the objects that are associated with the GeneOntology:
ChildGeneOntologyRelationship: One to many assoication, use getChildGeneOntologyRelationshipCollection to get a collection of associated ChildGeneOntologyRelationship.
Gene: One to many assoication, use getGeneCollection to get a collection of associated Gene.
ParentGeneOntologyRelationship: One to many assoication, use getParentGeneOntologyRelationshipCollection to get a collection of associated ParentGeneOntologyRelationship.
End Associations and related methods
CaCORE::CaBIO::GeneOntologyRelationship - Perl extension for GeneOntologyRelationship.
The CaCORE::CaBIO::bean::GeneOntologyRelationship is a Perl object representation of the
caBIO generic object.
This object specifies GoOntologyrRelationship.
The following are all the attributes of the GeneOntologyRelationship object and their data types:
relationshipType string
id long
End Attributes
Note: Although you can also use the corresponding setter methods to set the
attribute values, it is not recommended to do so unless you absolutely have
to change the object's attributes.
The following are all the objects that are associated with the GeneOntologyRelationship:
ParentGeneOntology: Many to one assoication, use getParentGeneOntology to get the associated ParentGeneOntology.
ChildGeneOntology: Many to one assoication, use getChildGeneOntology to get the associated ChildGeneOntology.
End Associations and related methods
CaCORE::CaBIO::DiseaseOntologyRelationship - Perl extension for DiseaseOntologyRelationship.
The CaCORE::CaBIO::bean::DiseaseOntologyRelationship is a Perl object representation of the
caBIO generic object.
The diseaser relationship specifies the relationship among diseases.
The following are all the attributes of the DiseaseOntologyRelationship object and their data types:
type string
id long
End Attributes
Note: Although you can also use the corresponding setter methods to set the
attribute values, it is not recommended to do so unless you absolutely have
to change the object's attributes.
The following are all the objects that are associated with the DiseaseOntologyRelationship:
ChildDiseaseOntology: Many to one assoication, use getChildDiseaseOntology to get the associated ChildDiseaseOntology.
ParentDiseaseOntology: Many to one assoication, use getParentDiseaseOntology to get the associated ParentDiseaseOntology.
End Associations and related methods
CaCORE::CaBIO::Anomaly - Perl extension for Anomaly.
The CaCORE::CaBIO::bean::Anomaly is a Perl object representation of the
caBIO generic object.
An irregularity in either the expression of a gene or its structure (i.e., a mutation).
The following are all the attributes of the Anomaly object and their data types:
description string
id long
End Attributes
Note: Although you can also use the corresponding setter methods to set the
attribute values, it is not recommended to do so unless you absolutely have
to change the object's attributes.
The following are all the objects that are associated with the Anomaly:
OrganOntology: One to many assoication, use getOrganOntologyCollection to get a collection of associated OrganOntology.
Histopathology: Many to one assoication, use getHistopathology to get the associated Histopathology.
Vocabulary: One to many assoication, use getVocabularyCollection to get a collection of associated Vocabulary.
End Associations and related methods
CaCORE::CaBIO::PopulationFrequency - Perl extension for PopulationFrequency.
The CaCORE::CaBIO::bean::PopulationFrequency is a Perl object representation of the
caBIO generic object.
The following are all the attributes of the PopulationFrequency object and their data types:
majorFrequency double
type string
minorAllele string
ethnicity string
minorFrequency double
majorAllele string
id long
End Attributes
Note: Although you can also use the corresponding setter methods to set the
attribute values, it is not recommended to do so unless you absolutely have
to change the object's attributes.
The following are all the objects that are associated with the PopulationFrequency:
SNP: Many to one assoication, use getSNP to get the associated SNP.
End Associations and related methods
CaCORE::CaBIO::ProteinSequence - Perl extension for ProteinSequence.
The CaCORE::CaBIO::bean::ProteinSequence is a Perl object representation of the
caBIO generic object.
The following are all the attributes of the ProteinSequence object and their data types:
checkSum string
value string
molecularWeightInDaltons double
length long
id long
End Attributes
Note: Although you can also use the corresponding setter methods to set the
attribute values, it is not recommended to do so unless you absolutely have
to change the object's attributes.
The following are all the objects that are associated with the ProteinSequence:
Protein: Many to one assoication, use getProtein to get the associated Protein.
End Associations and related methods
CaCORE::CaBIO::Protein - Perl extension for Protein.
The CaCORE::CaBIO::bean::Protein is a Perl object representation of the
caBIO generic object.
The following are all the attributes of the Protein object and their data types:
copyrightStatement string
primaryAccession string
name string
uniProtCode string
id long
End Attributes
Note: Although you can also use the corresponding setter methods to set the
attribute values, it is not recommended to do so unless you absolutely have
to change the object's attributes.
The following are all the objects that are associated with the Protein:
Taxon: One to many assoication, use getTaxonCollection to get a collection of associated Taxon.
Gene: One to many assoication, use getGeneCollection to get a collection of associated Gene.
SecondaryAccession: One to many assoication, use getSecondaryAccessionCollection to get a collection of associated SecondaryAccession.
Keywords: One to many assoication, use getKeywordsCollection to get a collection of associated Keywords.
ProteinSequence: Many to one assoication, use getProteinSequence to get the associated ProteinSequence.
ProteinAlias: One to many assoication, use getProteinAliasCollection to get a collection of associated ProteinAlias.
End Associations and related methods
CaCORE::CaBIO::ProteinAlias - Perl extension for ProteinAlias.
The CaCORE::CaBIO::bean::ProteinAlias is a Perl object representation of the
caBIO generic object.
The following are all the attributes of the ProteinAlias object and their data types:
name string
id long
End Attributes
Note: Although you can also use the corresponding setter methods to set the
attribute values, it is not recommended to do so unless you absolutely have
to change the object's attributes.
The following are all the objects that are associated with the ProteinAlias:
Protein: One to many assoication, use getProteinCollection to get a collection of associated Protein.
End Associations and related methods
CaCORE::CaBIO::HomologousAssociation - Perl extension for HomologousAssociation.
The CaCORE::CaBIO::bean::HomologousAssociation is a Perl object representation of the
caBIO generic object.
The following are all the attributes of the HomologousAssociation object and their data types:
similarityPercentage float
homologousId long
id long
End Attributes
Note: Although you can also use the corresponding setter methods to set the
attribute values, it is not recommended to do so unless you absolutely have
to change the object's attributes.
The following are all the objects that are associated with the HomologousAssociation:
HomologousGene: Many to one assoication, use getHomologousGene to get the associated HomologousGene.
End Associations and related methods
CaCORE::CaBIO::PhysicalLocation - Perl extension for PhysicalLocation.
The CaCORE::CaBIO::bean::PhysicalLocation is a Perl object representation of the
caBIO generic object.
The following are all the attributes of the PhysicalLocation object and their data types:
chromosomalStartPosition long
chromosomalEndPosition long
End Attributes
Note: Although you can also use the corresponding setter methods to set the
attribute values, it is not recommended to do so unless you absolutely have
to change the object's attributes.
The following are all the objects that are associated with the PhysicalLocation:
Cytoband: One to many assoication, use getCytobandCollection to get a collection of associated Cytoband.
End Associations and related methods
CaCORE::CaBIO::Cytoband - Perl extension for Cytoband.
The CaCORE::CaBIO::bean::Cytoband is a Perl object representation of the
caBIO generic object.
The following are all the attributes of the Cytoband object and their data types:
name string
id long
End Attributes
Note: Although you can also use the corresponding setter methods to set the
attribute values, it is not recommended to do so unless you absolutely have
to change the object's attributes.
The following are all the objects that are associated with the Cytoband:
PhysicalLocation: Many to one assoication, use getPhysicalLocation to get the associated PhysicalLocation.
End Associations and related methods
CaCORE::CaBIO::CytogeneticLocation - Perl extension for CytogeneticLocation.
The CaCORE::CaBIO::bean::CytogeneticLocation is a Perl object representation of the
caBIO generic object.
The following are all the attributes of the CytogeneticLocation object and their data types:
End Attributes
Note: Although you can also use the corresponding setter methods to set the
attribute values, it is not recommended to do so unless you absolutely have
to change the object's attributes.
The following are all the objects that are associated with the CytogeneticLocation:
StartCytoband: Many to one assoication, use getStartCytoband to get the associated StartCytoband.
EndCytoband: Many to one assoication, use getEndCytoband to get the associated EndCytoband.
End Associations and related methods
CaCORE::CaBIO::GeneRelativeLocation - Perl extension for GeneRelativeLocation.
The CaCORE::CaBIO::bean::GeneRelativeLocation is a Perl object representation of the
caBIO generic object.
The following are all the attributes of the GeneRelativeLocation object and their data types:
type string
id long
End Attributes
Note: Although you can also use the corresponding setter methods to set the
attribute values, it is not recommended to do so unless you absolutely have
to change the object's attributes.
The following are all the objects that are associated with the GeneRelativeLocation:
End Associations and related methods
CaCORE::CaBIO::GenericReporter - Perl extension for GenericReporter.
The CaCORE::CaBIO::bean::GenericReporter is a Perl object representation of the
caBIO generic object.
The following are all the attributes of the GenericReporter object and their data types:
name string
type string
id long
End Attributes
Note: Although you can also use the corresponding setter methods to set the
attribute values, it is not recommended to do so unless you absolutely have
to change the object's attributes.
The following are all the objects that are associated with the GenericReporter:
GenericArray: One to many assoication, use getGenericArrayCollection to get a collection of associated GenericArray.
End Associations and related methods
CaCORE::CaBIO::GenericArray - Perl extension for GenericArray.
The CaCORE::CaBIO::bean::GenericArray is a Perl object representation of the
caBIO generic object.
The following are all the attributes of the GenericArray object and their data types:
arrayName string
platform string
type string
id long
End Attributes
Note: Although you can also use the corresponding setter methods to set the
attribute values, it is not recommended to do so unless you absolutely have
to change the object's attributes.
The following are all the objects that are associated with the GenericArray:
GenericReporter: One to many assoication, use getGenericReporterCollection to get a collection of associated GenericReporter.
End Associations and related methods