End Associations and related methods
CaCORE::CaMOD::Availability - Perl extension for Availability.
The CaCORE::CaMOD::bean::Availability is a Perl object representation of the
caBIO generic object.
Dates on which a animal model record was entered, modified or release to the intended viewing audience.
The following are all the attributes of the Availability object and their data types:
enteredDate dateTime
visibleTo string
id long
releaseDate dateTime
modifiedDate dateTime
End Attributes
Note: Although you can also use the corresponding setter methods to set the
attribute values, it is not recommended to do so unless you absolutely have
to change the object's attributes.
The following are all the objects that are associated with the Availability:
End Associations and related methods
CaCORE::CaMOD::AbstractCancerModel - Perl extension for AbstractCancerModel.
The CaCORE::CaMOD::bean::AbstractCancerModel is a Perl object representation of the
caBIO generic object.
The following are all the attributes of the AbstractCancerModel object and their data types:
experimentDesign string
modelDescriptor string
id long
End Attributes
Note: Although you can also use the corresponding setter methods to set the
attribute values, it is not recommended to do so unless you absolutely have
to change the object's attributes.
The following are all the objects that are associated with the AbstractCancerModel:
ApprovalStatus: Many to one assoication, use getApprovalStatus to get the associated ApprovalStatus.
Availability: Many to one assoication, use getAvailability to get the associated Availability.
PartyRole: One to many assoication, use getPartyRoleCollection to get a collection of associated PartyRole.
Publication: One to many assoication, use getPublicationCollection to get a collection of associated Publication.
End Associations and related methods
CaCORE::CaMOD::TumorCode - Perl extension for TumorCode.
The CaCORE::CaMOD::bean::TumorCode is a Perl object representation of the
caBIO generic object.
A tumor code captures the tumor type and origin species used for a drug screen test.
The following are all the attributes of the TumorCode object and their data types:
code string
description string
id long
End Attributes
Note: Although you can also use the corresponding setter methods to set the
attribute values, it is not recommended to do so unless you absolutely have
to change the object's attributes.
The following are all the objects that are associated with the TumorCode:
End Associations and related methods
CaCORE::CaMOD::Xenograft - Perl extension for Xenograft.
The CaCORE::CaMOD::bean::Xenograft is a Perl object representation of the
caBIO generic object.
This object describes to xenografts (implanting tissue or cell lines from a different species) and allografts (implanting tissue or cell lines form the same species). The grafts are transplanted in immuno-compromised animals where they grow and, depending on the graft material, form tumors.
The following are all the attributes of the Xenograft object and their data types:
geneticManipulation string
administrativeSite string
type string
parentalCellLineName string
modificationDescription string
name string
End Attributes
Note: Although you can also use the corresponding setter methods to set the
attribute values, it is not recommended to do so unless you absolutely have
to change the object's attributes.
The following are all the objects that are associated with the Xenograft:
InvivoResult: One to many assoication, use getInvivoResultCollection to get a collection of associated InvivoResult.
TumorCode: Many to one assoication, use getTumorCode to get the associated TumorCode.
OriginTaxon: Many to one assoication, use getOriginTaxon to get the associated OriginTaxon.
HostTaxon: Many to one assoication, use getHostTaxon to get the associated HostTaxon.
End Associations and related methods
CaCORE::CaMOD::TreatmentSchedule - Perl extension for TreatmentSchedule.
The CaCORE::CaMOD::bean::TreatmentSchedule is a Perl object representation of the
caBIO generic object.
Treatment schedule for the pre-clinical trial / therapeutic experiment describing the dosages of the drug and the times of the treatment.
The following are all the attributes of the TreatmentSchedule object and their data types:
regimen string
dosage string
id long
End Attributes
Note: Although you can also use the corresponding setter methods to set the
attribute values, it is not recommended to do so unless you absolutely have
to change the object's attributes.
The following are all the objects that are associated with the TreatmentSchedule:
End Associations and related methods
CaCORE::CaMOD::Nomenclature - Perl extension for Nomenclature.
The CaCORE::CaMOD::bean::Nomenclature is a Perl object representation of the
caBIO generic object.
Official nomenclature name for mouse and rat models.
The following are all the attributes of the Nomenclature object and their data types:
name string
id long
End Attributes
Note: Although you can also use the corresponding setter methods to set the
attribute values, it is not recommended to do so unless you absolutely have
to change the object's attributes.
The following are all the objects that are associated with the Nomenclature:
End Associations and related methods
CaCORE::CaMOD::GenotypeSummary - Perl extension for GenotypeSummary.
The CaCORE::CaMOD::bean::GenotypeSummary is a Perl object representation of the
caBIO generic object.
Listing of the genetic changes made deliberately in order to generate the animal model.
The following are all the attributes of the GenotypeSummary object and their data types:
summary string
genotype string
id long
End Attributes
Note: Although you can also use the corresponding setter methods to set the
attribute values, it is not recommended to do so unless you absolutely have
to change the object's attributes.
The following are all the objects that are associated with the GenotypeSummary:
Nomenclature: Many to one assoication, use getNomenclature to get the associated Nomenclature.
End Associations and related methods
CaCORE::CaMOD::Conditionality - Perl extension for Conditionality.
The CaCORE::CaMOD::bean::Conditionality is a Perl object representation of the
caBIO generic object.
Indicates if a transgene or targeted modification is done conditionally (time or tissue specific).
The following are all the attributes of the Conditionality object and their data types:
description string
conditionedBy string
id long
End Attributes
Note: Although you can also use the corresponding setter methods to set the
attribute values, it is not recommended to do so unless you absolutely have
to change the object's attributes.
The following are all the objects that are associated with the Conditionality:
End Associations and related methods
CaCORE::CaMOD::Image - Perl extension for Image.
The CaCORE::CaMOD::bean::Image is a Perl object representation of the
caBIO generic object.
Images related to the animal model e.g. histology images, blots, and graphics.
The following are all the attributes of the Image object and their data types:
description string
title string
id long
staining string
End Attributes
Note: Although you can also use the corresponding setter methods to set the
attribute values, it is not recommended to do so unless you absolutely have
to change the object's attributes.
The following are all the objects that are associated with the Image:
Availability: Many to one assoication, use getAvailability to get the associated Availability.
End Associations and related methods
CaCORE::CaMOD::EngineeredGene - Perl extension for EngineeredGene.
The CaCORE::CaMOD::bean::EngineeredGene is a Perl object representation of the
caBIO generic object.
Manipulated Gene introduced in the animal model.
The following are all the attributes of the EngineeredGene object and their data types:
cabioId long
name string
id long
End Attributes
Note: Although you can also use the corresponding setter methods to set the
attribute values, it is not recommended to do so unless you absolutely have
to change the object's attributes.
The following are all the objects that are associated with the EngineeredGene:
Gene: One to many assoication, use getGeneCollection to get a collection of associated Gene.
DatabaseCrossReference: One to many assoication, use getDatabaseCrossReferenceCollection to get a collection of associated DatabaseCrossReference.
GenotypeSummary: Many to one assoication, use getGenotypeSummary to get the associated GenotypeSummary.
ExpressionFeature: One to many assoication, use getExpressionFeatureCollection to get a collection of associated ExpressionFeature.
Conditionality: Many to one assoication, use getConditionality to get the associated Conditionality.
Image: Many to one assoication, use getImage to get the associated Image.
End Associations and related methods
CaCORE::CaMOD::IntegrationType - Perl extension for IntegrationType.
The CaCORE::CaMOD::bean::IntegrationType is a Perl object representation of the
caBIO generic object.
Location of the integration of the engineered gene e.g. random or targeted.
The following are all the attributes of the IntegrationType object and their data types:
name string
id long
End Attributes
Note: Although you can also use the corresponding setter methods to set the
attribute values, it is not recommended to do so unless you absolutely have
to change the object's attributes.
The following are all the objects that are associated with the IntegrationType:
GenomicSegment: One to many assoication, use getGenomicSegmentCollection to get a collection of associated GenomicSegment.
Transgene: One to many assoication, use getTransgeneCollection to get a collection of associated Transgene.
End Associations and related methods
CaCORE::CaMOD::Transgene - Perl extension for Transgene.
The CaCORE::CaMOD::bean::Transgene is a Perl object representation of the
caBIO generic object.
A transgene is an engineered gene consisting at least of a regulatory element and a coding sequence; regulatory element and coding sequence can come from different species.
The following are all the attributes of the Transgene object and their data types:
locationOfIntegration string
engineeredGeneId long
End Attributes
Note: Although you can also use the corresponding setter methods to set the
attribute values, it is not recommended to do so unless you absolutely have
to change the object's attributes.
The following are all the objects that are associated with the Transgene:
RegulatoryElement: One to many assoication, use getRegulatoryElementCollection to get a collection of associated RegulatoryElement.
IntegrationType: Many to one assoication, use getIntegrationType to get the associated IntegrationType.
End Associations and related methods
CaCORE::CaMOD::Therapy - Perl extension for Therapy.
The CaCORE::CaMOD::bean::Therapy is a Perl object representation of the
caBIO generic object.
Pre-clinical trials experiment conducted on the animal model with the goal to reduce cancer burden.
The following are all the attributes of the Therapy object and their data types:
experiment string
comments string
id long
results string
End Attributes
Note: Although you can also use the corresponding setter methods to set the
attribute values, it is not recommended to do so unless you absolutely have
to change the object's attributes.
The following are all the objects that are associated with the Therapy:
TreatmentSchedule: Many to one assoication, use getTreatmentSchedule to get the associated TreatmentSchedule.
Agent: Many to one assoication, use getAgent to get the associated Agent.
Publication: One to many assoication, use getPublicationCollection to get a collection of associated Publication.
End Associations and related methods
CaCORE::CaMOD::YeastModel - Perl extension for YeastModel.
The CaCORE::CaMOD::bean::YeastModel is a Perl object representation of the
caBIO generic object.
A yeast model captures the yeast strains altered in the NCI Yeast Anticancer Drug Screen.
The following are all the attributes of the YeastModel object and their data types:
End Attributes
Note: Although you can also use the corresponding setter methods to set the
attribute values, it is not recommended to do so unless you absolutely have
to change the object's attributes.
The following are all the objects that are associated with the YeastModel:
TargetedModification: One to many assoication, use getTargetedModificationCollection to get a collection of associated TargetedModification.
ScreeningResult: One to many assoication, use getScreeningResultCollection to get a collection of associated ScreeningResult.
End Associations and related methods
CaCORE::CaMOD::TargetedModification - Perl extension for TargetedModification.
The CaCORE::CaMOD::bean::TargetedModification is a Perl object representation of the
caBIO generic object.
Modification targeted to a specific gene or a specific part of the gene to either suppress the function of the gene or insert marker sequences like loxP sites.
The following are all the attributes of the TargetedModification object and their data types:
esCellLineName string
blastocystName string
id long
End Attributes
Note: Although you can also use the corresponding setter methods to set the
attribute values, it is not recommended to do so unless you absolutely have
to change the object's attributes.
The following are all the objects that are associated with the TargetedModification:
ModificationType: One to many assoication, use getModificationTypeCollection to get a collection of associated ModificationType.
YeastModel: Many to one assoication, use getYeastModel to get the associated YeastModel.
EngineeredGene: Many to one assoication, use getEngineeredGene to get the associated EngineeredGene.
End Associations and related methods
CaCORE::CaMOD::SexDistribution - Perl extension for SexDistribution.
The CaCORE::CaMOD::bean::SexDistribution is a Perl object representation of the
caBIO generic object.
Object indicated if the phenotype was observed in both sexes or only in one.
The following are all the attributes of the SexDistribution object and their data types:
type string
id long
End Attributes
Note: Although you can also use the corresponding setter methods to set the
attribute values, it is not recommended to do so unless you absolutely have
to change the object's attributes.
The following are all the objects that are associated with the SexDistribution:
End Associations and related methods
CaCORE::CaMOD::SegmentType - Perl extension for SegmentType.
The CaCORE::CaMOD::bean::SegmentType is a Perl object representation of the
caBIO generic object.
specifies the type of library that the genomic segment was retrieved from such as BAC or YAC.
The following are all the attributes of the SegmentType object and their data types:
name string
id long
End Attributes
Note: Although you can also use the corresponding setter methods to set the
attribute values, it is not recommended to do so unless you absolutely have
to change the object's attributes.
The following are all the objects that are associated with the SegmentType:
End Associations and related methods
CaCORE::CaMOD::Role - Perl extension for Role.
The CaCORE::CaMOD::bean::Role is a Perl object representation of the
caBIO generic object.
Role that a person or organization plays e.g. public user, reviewer.
The following are all the attributes of the Role object and their data types:
name string
id long
End Attributes
Note: Although you can also use the corresponding setter methods to set the
attribute values, it is not recommended to do so unless you absolutely have
to change the object's attributes.
The following are all the objects that are associated with the Role:
PartyRole: One to many assoication, use getPartyRoleCollection to get a collection of associated PartyRole.
End Associations and related methods
CaCORE::CaMOD::RepositoryInfo - Perl extension for RepositoryInfo.
The CaCORE::CaMOD::bean::RepositoryInfo is a Perl object representation of the
caBIO generic object.
Some animal models are distributed by the MMHCC mouse repository. Object contains information about the availability of a particular model from the repository. A submitter of data to the cancer models database can also indicate if their model should be submitted to the repository.
The following are all the attributes of the RepositoryInfo object and their data types:
inTheRepository long
sentEmailContent string
id long
suggestSubmission long
End Attributes
Note: Although you can also use the corresponding setter methods to set the
attribute values, it is not recommended to do so unless you absolutely have
to change the object's attributes.
The following are all the objects that are associated with the RepositoryInfo:
End Associations and related methods
CaCORE::CaMOD::RegulatoryElementType - Perl extension for RegulatoryElementType.
The CaCORE::CaMOD::bean::RegulatoryElementType is a Perl object representation of the
caBIO generic object.
Type of the regulatory element e.g. promoter, polyA signal.
The following are all the attributes of the RegulatoryElementType object and their data types:
name string
id long
End Attributes
Note: Although you can also use the corresponding setter methods to set the
attribute values, it is not recommended to do so unless you absolutely have
to change the object's attributes.
The following are all the objects that are associated with the RegulatoryElementType:
End Associations and related methods
CaCORE::CaMOD::RegulatoryElement - Perl extension for RegulatoryElement.
The CaCORE::CaMOD::bean::RegulatoryElement is a Perl object representation of the
caBIO generic object.
A regulatory element controls the expression of a gene and/or and engineered gene.
The following are all the attributes of the RegulatoryElement object and their data types:
name string
id long
End Attributes
Note: Although you can also use the corresponding setter methods to set the
attribute values, it is not recommended to do so unless you absolutely have
to change the object's attributes.
The following are all the objects that are associated with the RegulatoryElement:
Promoter: One to many assoication, use getPromoterCollection to get a collection of associated Promoter.
Taxon: Many to one assoication, use getTaxon to get the associated Taxon.
RegulatoryElementType: Many to one assoication, use getRegulatoryElementType to get the associated RegulatoryElementType.
End Associations and related methods
CaCORE::CaMOD::PublicationStatus - Perl extension for PublicationStatus.
The CaCORE::CaMOD::bean::PublicationStatus is a Perl object representation of the
caBIO generic object.
Status of the publication e.g. published, submitted.
The following are all the attributes of the PublicationStatus object and their data types:
name string
id long
End Attributes
Note: Although you can also use the corresponding setter methods to set the
attribute values, it is not recommended to do so unless you absolutely have
to change the object's attributes.
The following are all the objects that are associated with the PublicationStatus:
End Associations and related methods
CaCORE::CaMOD::Publication - Perl extension for Publication.
The CaCORE::CaMOD::bean::Publication is a Perl object representation of the
caBIO generic object.
Publications describing the animal model itself or experiments in which the animal model was used.
The following are all the attributes of the Publication object and their data types:
volume string
endPage long
year long
title string
pmid long
startPage long
journal string
authors string
id long
End Attributes
Note: Although you can also use the corresponding setter methods to set the
attribute values, it is not recommended to do so unless you absolutely have
to change the object's attributes.
The following are all the objects that are associated with the Publication:
PublicationStatus: Many to one assoication, use getPublicationStatus to get the associated PublicationStatus.
End Associations and related methods
CaCORE::CaMOD::Promoter - Perl extension for Promoter.
The CaCORE::CaMOD::bean::Promoter is a Perl object representation of the
caBIO generic object.
Promoter is a subcategory of the regulatory element.
The following are all the attributes of the Promoter object and their data types:
id long
End Attributes
Note: Although you can also use the corresponding setter methods to set the
attribute values, it is not recommended to do so unless you absolutely have
to change the object's attributes.
The following are all the objects that are associated with the Promoter:
Gene: Many to one assoication, use getGene to get the associated Gene.
RegulatoryElement: Many to one assoication, use getRegulatoryElement to get the associated RegulatoryElement.
End Associations and related methods
CaCORE::CaMOD::Phenotype - Perl extension for Phenotype.
The CaCORE::CaMOD::bean::Phenotype is a Perl object representation of the
caBIO generic object.
Phenotype displayed by the animal model such as neoplastic lesions, other diseases, behavioral problem.
The following are all the attributes of the Phenotype object and their data types:
description string
breedingNotes string
id long
End Attributes
Note: Although you can also use the corresponding setter methods to set the
attribute values, it is not recommended to do so unless you absolutely have
to change the object's attributes.
The following are all the objects that are associated with the Phenotype:
SexDistribution: Many to one assoication, use getSexDistribution to get the associated SexDistribution.
End Associations and related methods
CaCORE::CaMOD::Party - Perl extension for Party.
The CaCORE::CaMOD::bean::Party is a Perl object representation of the
caBIO generic object.
Entity that has access to the data, either a person or an organization.
The following are all the attributes of the Party object and their data types:
id long
End Attributes
Note: Although you can also use the corresponding setter methods to set the
attribute values, it is not recommended to do so unless you absolutely have
to change the object's attributes.
The following are all the objects that are associated with the Party:
PartyRole: One to many assoication, use getPartyRoleCollection to get a collection of associated PartyRole.
ContactInfo: One to many assoication, use getContactInfoCollection to get a collection of associated ContactInfo.
End Associations and related methods
CaCORE::CaMOD::Person - Perl extension for Person.
The CaCORE::CaMOD::bean::Person is a Perl object representation of the
caBIO generic object.
Person's first and last name and the connection to the party.
The following are all the attributes of the Person object and their data types:
partyId long
firstName string
lastName string
End Attributes
Note: Although you can also use the corresponding setter methods to set the
attribute values, it is not recommended to do so unless you absolutely have
to change the object's attributes.
The following are all the objects that are associated with the Person:
End Associations and related methods
CaCORE::CaMOD::PartyRole - Perl extension for PartyRole.
The CaCORE::CaMOD::bean::PartyRole is a Perl object representation of the
caBIO generic object.
Object connects the party (organization or person) with the animal model.
The following are all the attributes of the PartyRole object and their data types:
id long
End Attributes
Note: Although you can also use the corresponding setter methods to set the
attribute values, it is not recommended to do so unless you absolutely have
to change the object's attributes.
The following are all the objects that are associated with the PartyRole:
Role: Many to one assoication, use getRole to get the associated Role.
AnimalModel: One to many assoication, use getAnimalModelCollection to get a collection of associated AnimalModel.
Party: Many to one assoication, use getParty to get the associated Party.
End Associations and related methods
CaCORE::CaMOD::Organization - Perl extension for Organization.
The CaCORE::CaMOD::bean::Organization is a Perl object representation of the
caBIO generic object.
Organizational unit like a laboratory, institute or consortium.
The following are all the attributes of the Organization object and their data types:
partyId long
name string
id long
End Attributes
Note: Although you can also use the corresponding setter methods to set the
attribute values, it is not recommended to do so unless you absolutely have
to change the object's attributes.
The following are all the objects that are associated with the Organization:
End Associations and related methods
CaCORE::CaMOD::MicroArrayData - Perl extension for MicroArrayData.
The CaCORE::CaMOD::bean::MicroArrayData is a Perl object representation of the
caBIO generic object.
Data of microarray experiments generated from the animal model.
The following are all the attributes of the MicroArrayData object and their data types:
experimentName string
id long
experimentId long
End Attributes
Note: Although you can also use the corresponding setter methods to set the
attribute values, it is not recommended to do so unless you absolutely have
to change the object's attributes.
The following are all the objects that are associated with the MicroArrayData:
Availability: Many to one assoication, use getAvailability to get the associated Availability.
End Associations and related methods
CaCORE::CaMOD::JaxInfo - Perl extension for JaxInfo.
The CaCORE::CaMOD::bean::JaxInfo is a Perl object representation of the
caBIO generic object.
Identification number (stock number) of strain at the Jackson Laboratory, number can be used for ordering the strain; http://www.jax.org.
The following are all the attributes of the JaxInfo object and their data types:
jaxStockNo long
id long
End Attributes
Note: Although you can also use the corresponding setter methods to set the
attribute values, it is not recommended to do so unless you absolutely have
to change the object's attributes.
The following are all the objects that are associated with the JaxInfo:
End Associations and related methods
CaCORE::CaMOD::EnvironmentalFactor - Perl extension for EnvironmentalFactor.
The CaCORE::CaMOD::bean::EnvironmentalFactor is a Perl object representation of the
caBIO generic object.
Chemical, radiation, hormone treatment or other environmental factor that initiates or supports development of neoplasias.
The following are all the attributes of the EnvironmentalFactor object and their data types:
name string
type string
id long
End Attributes
Note: Although you can also use the corresponding setter methods to set the
attribute values, it is not recommended to do so unless you absolutely have
to change the object's attributes.
The following are all the objects that are associated with the EnvironmentalFactor:
InducedMutation: One to many assoication, use getInducedMutationCollection to get a collection of associated InducedMutation.
End Associations and related methods
CaCORE::CaMOD::InducedMutation - Perl extension for InducedMutation.
The CaCORE::CaMOD::bean::InducedMutation is a Perl object representation of the
caBIO generic object.
Induced mutations are defined as mutations triggered by radiation, chemicals or other means. Progeny of the treated animal inherits the mutation.
The following are all the attributes of the InducedMutation object and their data types:
id long
End Attributes
Note: Although you can also use the corresponding setter methods to set the
attribute values, it is not recommended to do so unless you absolutely have
to change the object's attributes.
The following are all the objects that are associated with the InducedMutation:
EnvironmentalFactor: Many to one assoication, use getEnvironmentalFactor to get the associated EnvironmentalFactor.
EngineeredGene: One to many assoication, use getEngineeredGeneCollection to get a collection of associated EngineeredGene.
End Associations and related methods
CaCORE::CaMOD::GenomicSegment - Perl extension for GenomicSegment.
The CaCORE::CaMOD::bean::GenomicSegment is a Perl object representation of the
caBIO generic object.
Genomic segment extracted from a library e.g. BAC or YAC library to be used in the genetic manipulation of the animal model.
The following are all the attributes of the GenomicSegment object and their data types:
locationOfIntegration string
segmentSize string
id long
cloneDesignator string
End Attributes
Note: Although you can also use the corresponding setter methods to set the
attribute values, it is not recommended to do so unless you absolutely have
to change the object's attributes.
The following are all the objects that are associated with the GenomicSegment:
SegmentType: Many to one assoication, use getSegmentType to get the associated SegmentType.
EngineeredGene: One to many assoication, use getEngineeredGeneCollection to get a collection of associated EngineeredGene.
End Associations and related methods
CaCORE::CaMOD::GeneticAlteration - Perl extension for GeneticAlteration.
The CaCORE::CaMOD::bean::GeneticAlteration is a Perl object representation of the
caBIO generic object.
Genetic alterations found in the neoplastic lesions of the animal model. These alterations are not made intentionally.
The following are all the attributes of the GeneticAlteration object and their data types:
observation string
methodOfObservation string
id long
End Attributes
Note: Although you can also use the corresponding setter methods to set the
attribute values, it is not recommended to do so unless you absolutely have
to change the object's attributes.
The following are all the objects that are associated with the GeneticAlteration:
End Associations and related methods
CaCORE::CaMOD::GeneFunction - Perl extension for GeneFunction.
The CaCORE::CaMOD::bean::GeneFunction is a Perl object representation of the
caBIO generic object.
Functions of the engineered genes.
The following are all the attributes of the GeneFunction object and their data types:
function string
id long
End Attributes
Note: Although you can also use the corresponding setter methods to set the
attribute values, it is not recommended to do so unless you absolutely have
to change the object's attributes.
The following are all the objects that are associated with the GeneFunction:
EngineeredGene: Many to one assoication, use getEngineeredGene to get the associated EngineeredGene.
End Associations and related methods
CaCORE::CaMOD::GeneDelivery - Perl extension for GeneDelivery.
The CaCORE::CaMOD::bean::GeneDelivery is a Perl object representation of the
caBIO generic object.
Gene is delivered to specific organs or specific receptors within the animal model. using viral vectors
The following are all the attributes of the GeneDelivery object and their data types:
viralVector string
id long
End Attributes
Note: Although you can also use the corresponding setter methods to set the
attribute values, it is not recommended to do so unless you absolutely have
to change the object's attributes.
The following are all the objects that are associated with the GeneDelivery:
EngineeredGene: Many to one assoication, use getEngineeredGene to get the associated EngineeredGene.
End Associations and related methods
CaCORE::CaMOD::ContactInfo - Perl extension for ContactInfo.
The CaCORE::CaMOD::bean::ContactInfo is a Perl object representation of the
caBIO generic object.
Information regarding the person who submitted the data.
The following are all the attributes of the ContactInfo object and their data types:
faxNumber string
zipCode string
street string
institute string
state string
email string
phoneNumber string
labName string
id long
city string
End Attributes
Note: Although you can also use the corresponding setter methods to set the
attribute values, it is not recommended to do so unless you absolutely have
to change the object's attributes.
The following are all the objects that are associated with the ContactInfo:
Party: One to many assoication, use getPartyCollection to get a collection of associated Party.
End Associations and related methods
CaCORE::CaMOD::CellLine - Perl extension for CellLine.
The CaCORE::CaMOD::bean::CellLine is a Perl object representation of the
caBIO generic object.
Cell lines generated from the animal model.
The following are all the attributes of the CellLine object and their data types:
experiment string
comments string
name string
results string
id long
End Attributes
Note: Although you can also use the corresponding setter methods to set the
attribute values, it is not recommended to do so unless you absolutely have
to change the object's attributes.
The following are all the objects that are associated with the CellLine:
Publication: One to many assoication, use getPublicationCollection to get a collection of associated Publication.
End Associations and related methods
CaCORE::CaMOD::CarcinogenicIntervention - Perl extension for CarcinogenicIntervention.
The CaCORE::CaMOD::bean::CarcinogenicIntervention is a Perl object representation of the
caBIO generic object.
Treatment or procedure that the animal model was exposed to in order to initiate or support the development of neoplastic lesions.
The following are all the attributes of the CarcinogenicIntervention object and their data types:
id long
End Attributes
Note: Although you can also use the corresponding setter methods to set the
attribute values, it is not recommended to do so unless you absolutely have
to change the object's attributes.
The following are all the objects that are associated with the CarcinogenicIntervention:
EnvironmentalFactor: Many to one assoication, use getEnvironmentalFactor to get the associated EnvironmentalFactor.
TreatmentSchedule: Many to one assoication, use getTreatmentSchedule to get the associated TreatmentSchedule.
End Associations and related methods
CaCORE::CaMOD::AnimalModel - Perl extension for AnimalModel.
The CaCORE::CaMOD::bean::AnimalModel is a Perl object representation of the
caBIO generic object.
An animal model which develops cancer or can be used to generate a model that develops cancer.
The following are all the attributes of the AnimalModel object and their data types:
url string
End Attributes
Note: Although you can also use the corresponding setter methods to set the
attribute values, it is not recommended to do so unless you absolutely have
to change the object's attributes.
The following are all the objects that are associated with the AnimalModel:
Phenotype: Many to one assoication, use getPhenotype to get the associated Phenotype.
CarcinogenicIntervention: One to many assoication, use getCarcinogenicInterventionCollection to get a collection of associated CarcinogenicIntervention.
Therapy: One to many assoication, use getTherapyCollection to get a collection of associated Therapy.
Image: One to many assoication, use getImageCollection to get a collection of associated Image.
Xenograft: One to many assoication, use getXenograftCollection to get a collection of associated Xenograft.
MicroArrayData: One to many assoication, use getMicroArrayDataCollection to get a collection of associated MicroArrayData.
TargetedModification: One to many assoication, use getTargetedModificationCollection to get a collection of associated TargetedModification.
GenomicSegment: One to many assoication, use getGenomicSegmentCollection to get a collection of associated GenomicSegment.
RepositoryInfo: Many to one assoication, use getRepositoryInfo to get the associated RepositoryInfo.
Histopathology: One to many assoication, use getHistopathologyCollection to get a collection of associated Histopathology.
CellLine: One to many assoication, use getCellLineCollection to get a collection of associated CellLine.
Transgene: One to many assoication, use getTransgeneCollection to get a collection of associated Transgene.
JaxInfo: Many to one assoication, use getJaxInfo to get the associated JaxInfo.
InducedMutation: One to many assoication, use getInducedMutationCollection to get a collection of associated InducedMutation.
End Associations and related methods
CaCORE::CaMOD::EndpointCode - Perl extension for EndpointCode.
The CaCORE::CaMOD::bean::EndpointCode is a Perl object representation of the
caBIO generic object.
A endpoint code captures the parameter for measuring success of anti-drug screen test; mean tumor weightm median survival time, etc.
The following are all the attributes of the EndpointCode object and their data types:
code string
description string
id long
End Attributes
Note: Although you can also use the corresponding setter methods to set the
attribute values, it is not recommended to do so unless you absolutely have
to change the object's attributes.
The following are all the objects that are associated with the EndpointCode:
End Associations and related methods
CaCORE::CaMOD::ScreeningResult - Perl extension for ScreeningResult.
The CaCORE::CaMOD::bean::ScreeningResult is a Perl object representation of the
caBIO generic object.
A Screening Result captures the results of the tens of thousands of compounds screened for their ability to inhibit the growth of selected yeast strains altered in DNA damage repair or cell cycle control.
The following are all the attributes of the ScreeningResult object and their data types:
diffinh float
aveinh float
stage string
id long
inhibitionRate float
End Attributes
Note: Although you can also use the corresponding setter methods to set the
attribute values, it is not recommended to do so unless you absolutely have
to change the object's attributes.
The following are all the objects that are associated with the ScreeningResult:
TreatmentSchedule: Many to one assoication, use getTreatmentSchedule to get the associated TreatmentSchedule.
Agent: Many to one assoication, use getAgent to get the associated Agent.
End Associations and related methods
CaCORE::CaMOD::InvivoResult - Perl extension for InvivoResult.
The CaCORE::CaMOD::bean::InvivoResult is a Perl object representation of the
caBIO generic object.
An Invivo Result captures the results of anti-tumor drug screening.
The following are all the attributes of the InvivoResult object and their data types:
toxicityEvalDay string
evaluationDay string
toxicitySurvivors string
id long
End Attributes
Note: Although you can also use the corresponding setter methods to set the
attribute values, it is not recommended to do so unless you absolutely have
to change the object's attributes.
The following are all the objects that are associated with the InvivoResult:
TreatmentSchedule: Many to one assoication, use getTreatmentSchedule to get the associated TreatmentSchedule.
Agent: Many to one assoication, use getAgent to get the associated Agent.
EndpointCode: Many to one assoication, use getEndpointCode to get the associated EndpointCode.
End Associations and related methods
CaCORE::CaMOD::ModificationType - Perl extension for ModificationType.
The CaCORE::CaMOD::bean::ModificationType is a Perl object representation of the
caBIO generic object.
The following are all the attributes of the ModificationType object and their data types:
name string
id long
End Attributes
Note: Although you can also use the corresponding setter methods to set the
attribute values, it is not recommended to do so unless you absolutely have
to change the object's attributes.
The following are all the objects that are associated with the ModificationType:
TargetedModification: One to many assoication, use getTargetedModificationCollection to get a collection of associated TargetedModification.
End Associations and related methods
CaCORE::CaMOD::ExpressionFeature - Perl extension for ExpressionFeature.
The CaCORE::CaMOD::bean::ExpressionFeature is a Perl object representation of the
caBIO generic object.
The expression feature object describes expression pattern of the engineered gene in the cancer model.
The following are all the attributes of the ExpressionFeature object and their data types:
id long
End Attributes
Note: Although you can also use the corresponding setter methods to set the
attribute values, it is not recommended to do so unless you absolutely have
to change the object's attributes.
The following are all the objects that are associated with the ExpressionFeature:
OrganOntology: One to many assoication, use getOrganOntologyCollection to get a collection of associated OrganOntology.
End Associations and related methods
CaCORE::CaMOD::CancerModel - Perl extension for CancerModel.
The CaCORE::CaMOD::bean::CancerModel is a Perl object representation of the
caBIO generic object.
The following are all the attributes of the CancerModel object and their data types:
id long
End Attributes
Note: Although you can also use the corresponding setter methods to set the
attribute values, it is not recommended to do so unless you absolutely have
to change the object's attributes.
The following are all the objects that are associated with the CancerModel:
End Associations and related methods