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Gnatholepis anjerensis Bleeker, 1874
- Gobius anjerensis Bleeker, 1851; (valid as)
- Gobius cauerensis Bleeker, 1853; (synonym)
- Gobius ophthalmotaenia Bleeker, 1854; (synonym)
- Gobius capistratus Peters, 1855; (synonym)
- Gnatholepis knighti Jordan & Evermann, 1903; (synonym)
- Acentrogobius cauerensis Goren, 1979; (synonym)
- Gnatholepis cauerensis Goren, 1981; (synonym)
- Gnatholepis anjerensis Yoshino, 1984
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?Gnatholepis calliurus Jordan & Seale, 1905
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?Gnatholepis corlettei Herre, 1935
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?Gnatholepis davaoensis Seale, 1910
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Gnatholepis deltoides Yoshino, 1984
- Gobius deltoides Seale, 1901; (valid as)
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?Gnatholepis gemmeus Herre, 1927
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Gnatholepis inconsequens Whitley, 1958
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?Gnatholepis mingi Herre, 1936
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Gnatholepis scapulostigma Herre, 1953
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Gnatholepis thompsoni Jordan, 1904
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?Gnatholepis turneri Roxas & Ablan, 1940
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Gnatholepis volcanus Herre, 1927