from setuptools import setup


def get_version():
    v = '0.0.0'
    with open('treetime/__init__.py') as ifile:
        for line in ifile:
            if line[:7] == 'version':
                v = line.split('=')[-1].strip()[1:-1]
                break
    return v


with open('README.md', 'r') as fh:
    long_description = fh.read()

setup(
    name='phylo-treetime',
    version=get_version(),
    author='Pavel Sagulenko, Emma Hodcroft, and Richard Neher',
    author_email='richard.neher@unibas.ch',
    description=('Maximum-likelihood phylodynamic inference'),
    long_description=long_description,
    long_description_content_type='text/markdown',
    license='MIT',
    keywords='Time-stamped phylogenies, phylogeography, virus evolution',
    url='https://github.com/neherlab/treetime',
    packages=['treetime'],
    install_requires=['biopython>=1.67,!=1.77,!=1.78', 'numpy>=1.10.4', 'pandas>=0.17.1', 'scipy>=0.16.1'],
    extras_require={
        ':python_version >= "3.6"': ['matplotlib>=2.0'],
    },
    classifiers=[
        'Development Status :: 5 - Production/Stable',
        'Topic :: Scientific/Engineering :: Bio-Informatics',
        'License :: OSI Approved :: MIT License',
        'Programming Language :: Python :: 3.8',
        'Programming Language :: Python :: 3.9',
        'Programming Language :: Python :: 3.10',
    ],
    entry_points={
        'console_scripts': [
            'treetime = treetime.__main__:main',
        ]
    },
)
