/*!

\if MANPAGES
\page cda2dcm Encapsulate CDA file into DICOM file format
\else
\page cda2dcm cda2dcm: Encapsulate CDA file into DICOM file format
\endif

\section cda2dcm_synopsis SYNOPSIS

\verbatim
cda2dcm [options] cdafile-in dcmfile-out
\endverbatim

\section cda2dcm_description DESCRIPTION

The \b cda2dcm utility reads a CDA file (\e cdafile-in), converts it to a
DICOM Encapsulated CDA Storage SOP instance and stores the converted data
to an output file (\e dcmfile-out).

\section cda2dcm_parameters PARAMETERS

\verbatim
cdafile-in   CDA input filename to be encapsulated

dcmfile-out  DICOM output filename
\endverbatim

\section cda2dcm_options OPTIONS

\subsection cda2dcm_general_options general options
\verbatim
  -h   --help
         print this help text and exit

       --version
         print version information and exit

       --arguments
         print expanded command line arguments

  -q   --quiet
         quiet mode, print no warnings and errors

  -v   --verbose
         verbose mode, print processing details

  -d   --debug
         debug mode, print debug information

  -ll  --log-level  [l]evel: string constant
         (fatal, error, warn, info, debug, trace)
         use level l for the logger

  -lc  --log-config  [f]ilename: string
         use config file f for the logger
\endverbatim

\subsection cda2dcm_dicom_document_options DICOM document options
\verbatim
document title:

  +t   --title  [t]itle: string (default: empty)
         document title

  +cn  --concept-name  [CSD] [CV] [CM]: string (default: empty)
         coded representation of document title defined by coding
         scheme designator CSD, code value CV and code meaning CM

patient data:

  +pn  --patient-name  [n]ame: string
         patient's name in DICOM PN syntax

  +pi  --patient-id  [i]d: string
         patient identifier

  +pb  --patient-birthdate  [d]ate: string (YYYYMMDD)
         patient's birth date

  +ps  --patient-sex  [s]ex: string (M, F or O)
         patient's sex

study and series:

  +sg  --generate
         generate new study and series UIDs (default)

  +st  --study-from  [f]ilename: string
         read patient/study data from DICOM file

  +se  --series-from  [f]ilename: string
         read patient/study/series data from DICOM file

instance number:

  +i1  --instance-one
         use instance number 1 (default, not with +se)

  +ii  --instance-inc
         increment instance number (only with +se)

  +is  --instance-set [i]nstance number: integer
         use instance number i

burned-in annotation:

  +an  --annotation-yes
         document contains patient identifying data (default)

  -an  --annotation-no
         document does not contain patient identifying data

override CDA file data:

  -ov  --no-override
         CDA patient and document data must match study,
         series or manually entered information (default)

  +ov  --override
         data obtained from the CDA file will be overwritten
         by study, series, or manually entered information
\endverbatim

\subsection cda2dcm_processing_options processing options
\verbatim
other processing options:

  -k   --key  [k]ey: gggg,eeee="str", path or dictionary name="str"
         add further attribute
\endverbatim

\subsection cda2dcm_output_options output options
\verbatim
output file format:

  +F   --write-file
         write file format (default)

  -F   --write-dataset
         write data set without file meta information

group length encoding:

  +g=  --group-length-recalc
         recalculate group lengths if present (default)

  +g   --group-length-create
         always write with group length elements

  -g   --group-length-remove
         always write without group length elements

length encoding in sequences and items:

  +e   --length-explicit
         write with explicit lengths (default)

  -e   --length-undefined
         write with undefined lengths

data set trailing padding (not with --write-dataset):

  -p   --padding-off
         no padding (implicit if --write-dataset)

  +p   --padding-create  [f]ile-pad [i]tem-pad: integer
         align file on multiple of f bytes
         and items on multiple of i bytes
\endverbatim

\section cda2dcm_notes NOTES

\subsection cda2dcm_attribute_sources Attribute Sources

The application may be fed with some additional input for filling mandatory (and
optional) attributes in the new DICOM file like patient, study and series
information:

\li The \e --key option can be used to add further attributes to the DICOM
    output file.

\li It is also possible to specify sequences, items and nested
    attributes using the \e --key option. In these cases, a special "path"
    notation has to be used. Details on this path notation can be found in the
    documentation of \b dcmodify.

\li The \e --key option can be present more than once.

\li The value part (after the '=') may be absent causing the attribute to be
    set with zero length.

\li Please be advised that the \e --key option is applied at the very end, just
    before saving the DICOM file, so there is no value checking whatsoever.

\section cda2dcm_logging LOGGING

The level of logging output of the various command line tools and underlying
libraries can be specified by the user.  By default, only errors and warnings
are written to the standard error stream.  Using option \e --verbose also
informational messages like processing details are reported.  Option
\e --debug can be used to get more details on the internal activity, e.g. for
debugging purposes.  Other logging levels can be selected using option
\e --log-level.  In \e --quiet mode only fatal errors are reported.  In such
very severe error events, the application will usually terminate.  For more
details on the different logging levels, see documentation of module "oflog".

In case the logging output should be written to file (optionally with logfile
rotation), to syslog (Unix) or the event log (Windows) option \e --log-config
can be used.  This configuration file also allows for directing only certain
messages to a particular output stream and for filtering certain messages
based on the module or application where they are generated.  An example
configuration file is provided in <em>\<etcdir\>/logger.cfg</em>.

\section cda2dcm_command_line COMMAND LINE

All command line tools use the following notation for parameters: square
brackets enclose optional values (0-1), three trailing dots indicate that
multiple values are allowed (1-n), a combination of both means 0 to n values.

Command line options are distinguished from parameters by a leading '+' or '-'
sign, respectively.  Usually, order and position of command line options are
arbitrary (i.e. they can appear anywhere).  However, if options are mutually
exclusive the rightmost appearance is used.  This behavior conforms to the
standard evaluation rules of common Unix shells.

In addition, one or more command files can be specified using an '@' sign as a
prefix to the filename (e.g. <em>\@command.txt</em>).  Such a command argument
is replaced by the content of the corresponding text file (multiple
whitespaces are treated as a single separator unless they appear between two
quotation marks) prior to any further evaluation.  Please note that a command
file cannot contain another command file.  This simple but effective approach
allows one to summarize common combinations of options/parameters and avoids
longish and confusing command lines (an example is provided in file
<em>\<datadir\>/dumppat.txt</em>).

\section cda2dcm_exit_codes EXIT CODES

The \b cda2dcm utility uses the following exit codes when terminating.  This
enables the user to check for the reason why the application terminated.

\subsection cda2dcm_exit_codes_general general
\verbatim
EXITCODE_NO_ERROR                 0
EXITCODE_COMMANDLINE_SYNTAX_ERROR 1
EXITCODE_MEMORY_EXHAUSTED         4
\endverbatim

\subsection cda2dcm_exit_codes_input_file_errors input file errors
\verbatim
EXITCODE_CANNOT_READ_INPUT_FILE   20
EXITCODE_NO_INPUT_FILES           21
EXITCODE_INVALID_INPUT_FILE       22
\endverbatim

\subsection cda2dcm_exit_codes_output_file_errors output file errors
\verbatim
EXITCODE_CANNOT_WRITE_OUTPUT_FILE 40
\endverbatim

\section cda2dcm_environment ENVIRONMENT

The \b cda2dcm utility will attempt to load DICOM data dictionaries specified
in the \e DCMDICTPATH environment variable.  By default, i.e. if the
\e DCMDICTPATH environment variable is not set, the file
<em>\<datadir\>/dicom.dic</em> will be loaded unless the dictionary is built
into the application (default for Windows).

The default behavior should be preferred and the \e DCMDICTPATH environment
variable only used when alternative data dictionaries are required.  The
\e DCMDICTPATH environment variable has the same format as the Unix shell
\e PATH variable in that a colon (":") separates entries.  On Windows systems,
a semicolon (";") is used as a separator.  The data dictionary code will
attempt to load each file specified in the \e DCMDICTPATH environment
variable.
It is an error if no data dictionary can be loaded.

\section cda2dcm_copyright COPYRIGHT

Copyright (C) 2018-2022 by OFFIS e.V., Escherweg 2, 26121 Oldenburg, Germany.

*/
