AUTHORS
Changes
Doxyfile
inc/File/ShareDir/Install.pm
lib/Bio/ViennaNGS.pm
lib/Bio/ViennaNGS/AnnoC.pm
lib/Bio/ViennaNGS/Bam.pm
lib/Bio/ViennaNGS/BamStat.pm
lib/Bio/ViennaNGS/BamStatSummary.pm
lib/Bio/ViennaNGS/Bed.pm
lib/Bio/ViennaNGS/Expression.pm
lib/Bio/ViennaNGS/ExtFeature.pm
lib/Bio/ViennaNGS/Fasta.pm
lib/Bio/ViennaNGS/Feature.pm
lib/Bio/ViennaNGS/FeatureChain.pm
lib/Bio/ViennaNGS/FeatureLine.pm
lib/Bio/ViennaNGS/MinimalFeature.pm
lib/Bio/ViennaNGS/SpliceJunc.pm
lib/Bio/ViennaNGS/Tutorial.pm
lib/Bio/ViennaNGS/UCSC.pm
lib/Bio/ViennaNGS/Util.pm
Makefile.PL
MANIFEST			This list of files
README
scripts/assembly_hub_constructor.pl
scripts/bam_quality_stat.pl
scripts/bam_split.pl
scripts/bam_to_bigwig.pl
scripts/bam_uniq.pl
scripts/bed2bedGraph.pl
scripts/extend_bed.pl
scripts/gff2bed.pl
scripts/kmer_analysis.pl
scripts/MEME_xml_motif_extractor.pl
scripts/newUCSCdb.pl
scripts/normalize_multicov.pl
scripts/sj_visualizer.pl
scripts/splice_site_summary.pl
scripts/track_hub_constructor.pl
scripts/trim_fastq.pl
scripts/Tutorial_pipeline00.pl
scripts/Tutorial_pipeline01.pl
scripts/Tutorial_pipeline02.pl
scripts/Tutorial_pipeline03.pl
share/data1/NC_000913.3.30k.fa
share/data1/NC_000913.3.30k.gff
share/data1/NC_000913.3.chrom.sizes
share/data1/NC_000913.CDS.bed
share/data1/SRR794848.8k.bam
share/data2/MIOS.bed12
share/data2/MIOS_sj.bed
share/template-AssemblyHub/description.html
share/template-AssemblyHub/genome.txt
share/template-AssemblyHub/groups.txt
share/template-AssemblyHub/hub.txt
share/template-AssemblyHub/trackDb.txt
share/template-TrackHub/description.html
share/template-TrackHub/genome.txt
share/template-TrackHub/hub.txt
share/template-TrackHub/trackDb.txt
t/01-basics.t
t/02-thirdparty.t
t/04-UCSC-TrackHub.t
t/05-UCSC-AssemblyHub.t
t/06-SpliceJunc.t
META.yml                                 Module YAML meta-data (added by MakeMaker)
META.json                                Module JSON meta-data (added by MakeMaker)
