BLASTP 2.1.2 [Oct-19-2000]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|10038724|dbj|BAB12759.1| DNA-binding protein hu-alpha
[Buchnera sp. APS]
         (92 letters)

Database: mycge
           1 sequences; 607 total letters

Searchingdone

 ***** No hits found ******

  Database: mycge
    Posted date:  May 8, 2001  3:12 PM
  Number of letters in database: 607
  Number of sequences in database:  1

Lambda     K      H
   0.310    0.127    0.323

Gapped
Lambda     K      H
   0.270   0.0470    0.230


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 99
Number of Sequences: 1
Number of extensions: 4
Number of successful extensions: 0
Number of sequences better than 1.0e-15: 0
Number of HSP's better than  0.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 0
length of query: 92
length of database: 607
effective HSP length: 24
effective length of query: 68
effective length of database: 583
effective search space:    39644
effective search space used:    39644
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 42 (21.8 bits)
S2: 156 (65.2 bits)
BLASTP 2.1.2 [Oct-19-2000]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|10038744|dbj|BAB12779.1| DNA primase [Buchnera sp. APS]
         (577 letters)

Database: mycge
           1 sequences; 607 total letters

Searchingdone

                                                                   Score     E
Sequences producing significant alignments:                        (bits) 
Value

gi|12045104|ref|NP_072915.1| DNA primase (dnaE) [Mycoplasma gen...   125  7e-33

>gi|12045104|ref|NP_072915.1| DNA primase (dnaE) [Mycoplasma
           genitalium]
          Length = 607

 Score =  125 bits (310), Expect = 7e-33
 Identities = 118/461 (25%), Positives = 222/461 (47%), Gaps = 57/461 (12%)

Query: 10  ITELLSRTNIIELI-NTRLELKKYGKNYQTNCPFHHDKTPSFTVSNEKQFYYCFGCNAHG 68
           + ELL +  I E+I +  ++++  G +    CPFH DK PS ++S+ K  + C+ CNA G
Sbjct: 8   LDELLKQIKITEIIQHYGVKIQTKGNSLLALCPFHDDKNPSMSISSSKNIFKCWACNAAG 67

Query: 69  NAIDFLIQYEHLSFIESIEELALIHGVKIPFENTVQNSIYVKKQKLYLLMEKICKLY--- 125
           N I F+ +++ L +  ++++   I G+K+   N+   +    KQK Y  +      Y
Sbjct: 68  NGIAFIQKHDQLDWKTALKKAIEICGIKLENWNSNLLTKVDPKQKRYWEINNALITYYQT 127

Query: 126 --KKNINVTHLANKYLARRGINQNMIDFFLIGFSSLKWNEFYKKINISKEFEQELLINNI 183
             K+  N   + N  + +R +N+ +I+ F +G +    +++     + +  E+   IN
Sbjct: 128 RLKRETNPNGM-NYLVEKRKLNKTLIEQFQLGLAFHNEDKY-----LCESMERYPFINPK 181

Query: 184 I---------ATDKNGY-IYD------RFQGRIIFPIQDNHGRIIGFGGRSLNDMSP-KY 226
           I          T++ G   +D       FQ +I+ PI D +G  +GF  RS+++++  KY
Sbjct: 182 IKPSELYLFSKTNQQGLGFFDFNTKKATFQNQIMIPIHDFNGNPVGFSARSVDNINKLKY 241

Query: 227 LNSPETDIFYKRKQIYGLYQVIKKCSKPVYLLVVEGYIDVITLTQYNIDYAVSILGTSTT 286
            NS + + F K + ++  +++ K  ++   L +VEGY DV TLT    + AV+++G +
Sbjct: 242 KNSADHEFFKKGELLFNFHRLNKNLNQ---LFIVEGYFDVFTLTNSKFE-AVALMGLALN 297

Query: 287 TEHIQLL---FKNTDIIICCYDGDDAGKNAAWKTLKKALPYISDKKTLKFILL--PNQED 341
              I+ +   FK    ++   D D +G+NA +  ++K    +++   +  I+    N +D
Sbjct: 298 DVQIKAIKAHFKELQTLVLALDNDASGQNAVFSLIEK----LNNNNFIVEIVQWEHNYKD 353

Query: 342 PDTIIRKEGREKF----QKRIDNAITMSKFFFKNILKNINLSSDDDKFHLSVHALPLINT 397
            D +   +G E+      KR +    +  FF K  L    +++    F      L    T
Sbjct: 354 WDELYLNKGSEQVILQANKRQNLIEYLVSFFKKQQLDQRVITNKIIAF------LTKNQT 407

Query: 398 ISSD-TIRIYLRQILARMIGILDDNQFEKFLYEKETKNTQK 437
           I +D +  I+L + L +++   D    EK LYE   K+ +K
Sbjct: 408 ILNDHSFLIFLIKNLVKLLEYSD----EKTLYETVLKHKEK 444


  Database: mycge
    Posted date:  May 8, 2001  3:12 PM
  Number of letters in database: 607
  Number of sequences in database:  1

Lambda     K      H
   0.322    0.140    0.406

Gapped
Lambda     K      H
   0.270   0.0470    0.230


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 932
Number of Sequences: 1
Number of extensions: 63
Number of successful extensions: 4
Number of sequences better than 1.0e-15: 1
Number of HSP's better than  0.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 1
Number of HSP's gapped (non-prelim): 1
length of query: 577
length of database: 607
effective HSP length: 24
effective length of query: 553
effective length of database: 583
effective search space:   322399
effective search space used:   322399
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.9 bits)
S2: 164 (68.3 bits)
BLASTP 2.1.2 [Oct-19-2000]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|10038814|dbj|BAB12849.1| integration host factor
alpha-subunit [Buchnera sp. APS]
         (102 letters)

Database: mycge
           1 sequences; 607 total letters

Searchingdone

 ***** No hits found ******

  Database: mycge
    Posted date:  May 8, 2001  3:12 PM
  Number of letters in database: 607
  Number of sequences in database:  1

Lambda     K      H
   0.321    0.138    0.372

Gapped
Lambda     K      H
   0.270   0.0470    0.230


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 101
Number of Sequences: 1
Number of extensions: 4
Number of successful extensions: 0
Number of sequences better than 1.0e-15: 0
Number of HSP's better than  0.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 0
length of query: 102
length of database: 607
effective HSP length: 21
effective length of query: 81
effective length of database: 586
effective search space:    47466
effective search space used:    47466
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.9 bits)
S2: 157 (65.6 bits)
BLASTP 2.1.2 [Oct-19-2000]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|10038947|dbj|BAB12982.1| DNA-binding protein H-ns [Buchnera
sp. APS]
         (135 letters)

Database: mycge
           1 sequences; 607 total letters

Searchingdone

 ***** No hits found ******

  Database: mycge
    Posted date:  May 8, 2001  3:12 PM
  Number of letters in database: 607
  Number of sequences in database:  1

Lambda     K      H
   0.319    0.137    0.390

Gapped
Lambda     K      H
   0.270   0.0470    0.230


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 132
Number of Sequences: 1
Number of extensions: 3
Number of successful extensions: 0
Number of sequences better than 1.0e-15: 0
Number of HSP's better than  0.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 0
length of query: 135
length of database: 607
effective HSP length: 23
effective length of query: 112
effective length of database: 584
effective search space:    65408
effective search space used:    65408
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 158 (66.0 bits)
BLASTP 2.1.2 [Oct-19-2000]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|10038982|dbj|BAB13017.1| integration host factor
beta-subunit [Buchnera sp. APS]
         (94 letters)

Database: mycge
           1 sequences; 607 total letters

Searchingdone

 ***** No hits found ******

  Database: mycge
    Posted date:  May 8, 2001  3:12 PM
  Number of letters in database: 607
  Number of sequences in database:  1

Lambda     K      H
   0.319    0.136    0.372

Gapped
Lambda     K      H
   0.270   0.0470    0.230


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 114
Number of Sequences: 1
Number of extensions: 6
Number of successful extensions: 0
Number of sequences better than 1.0e-15: 0
Number of HSP's better than  0.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 0
length of query: 94
length of database: 607
effective HSP length: 21
effective length of query: 73
effective length of database: 586
effective search space:    42778
effective search space used:    42778
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 157 (65.6 bits)
BLASTP 2.1.2 [Oct-19-2000]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|10038996|dbj|BAB13030.1| cold shock-like protein cspC
[Buchnera sp. APS]
         (69 letters)

Database: mycge
           1 sequences; 607 total letters

Searchingdone

 ***** No hits found ******

  Database: mycge
    Posted date:  May 8, 2001  3:12 PM
  Number of letters in database: 607
  Number of sequences in database:  1

Lambda     K      H
   0.316    0.136    0.399

Gapped
Lambda     K      H
   0.270   0.0470    0.230


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 100
Number of Sequences: 1
Number of extensions: 5
Number of successful extensions: 0
Number of sequences better than 1.0e-15: 0
Number of HSP's better than  0.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 0
length of query: 69
length of database: 607
effective HSP length: 20
effective length of query: 49
effective length of database: 587
effective search space:    28763
effective search space used:    28763
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.6 bits)
S2: 155 (64.8 bits)
BLASTP 2.1.2 [Oct-19-2000]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|10039073|dbj|BAB13107.1| carbon storage regulator [Buchnera
sp. APS]
         (57 letters)

Database: mycge
           1 sequences; 607 total letters

Searchingdone

 ***** No hits found ******

  Database: mycge
    Posted date:  May 8, 2001  3:12 PM
  Number of letters in database: 607
  Number of sequences in database:  1

Lambda     K      H
   0.318    0.138    0.362

Gapped
Lambda     K      H
   0.270   0.0470    0.230


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 64
Number of Sequences: 1
Number of extensions: 2
Number of successful extensions: 0
Number of sequences better than 1.0e-15: 0
Number of HSP's better than  0.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 0
length of query: 57
length of database: 607
effective HSP length: 22
effective length of query: 35
effective length of database: 585
effective search space:    20475
effective search space used:    20475
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 154 (64.4 bits)
BLASTP 2.1.2 [Oct-19-2000]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|10039151|dbj|BAB13185.1| cold shock-like protein cspE
[Buchnera sp. APS]
         (69 letters)

Database: mycge
           1 sequences; 607 total letters

Searchingdone

 ***** No hits found ******

  Database: mycge
    Posted date:  May 8, 2001  3:12 PM
  Number of letters in database: 607
  Number of sequences in database:  1

Lambda     K      H
   0.313    0.132    0.375

Gapped
Lambda     K      H
   0.270   0.0470    0.230


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 80
Number of Sequences: 1
Number of extensions: 2
Number of successful extensions: 0
Number of sequences better than 1.0e-15: 0
Number of HSP's better than  0.0 without gapping: 0
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 0
length of query: 69
length of database: 607
effective HSP length: 21
effective length of query: 48
effective length of database: 586
effective search space:    28128
effective search space used:    28128
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 42 (21.9 bits)
S2: 155 (64.8 bits)
