TBLASTX 2.1.2 [Oct-19-2000]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= HUMBETGLOA Human haplotype C4 beta-globin gene, complete cds. 
         (3002 letters)

Database: ecoli.nt
           400 sequences; 4,662,239 total letters

Searching.................................................done

                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

gb|AE000479.1|AE000479 Escherichia coli K-12 MG1655 section 369 ...    34  0.13
gb|AE000302.1|AE000302 Escherichia coli K-12 MG1655 section 192 ...    31  0.61
gb|AE000277.1|AE000277 Escherichia coli K-12 MG1655 section 167 ...    31  0.84
gb|AE000168.1|AE000168 Escherichia coli K-12 MG1655 section 58 o...    29  2.2
gb|AE000400.1|AE000400 Escherichia coli K-12 MG1655 section 290 ...    29  3.0
gb|AE000408.1|AE000408 Escherichia coli K-12 MG1655 section 298 ...    29  3.0
gb|AE000438.1|AE000438 Escherichia coli K-12 MG1655 section 328 ...    29  3.0
gb|AE000396.1|AE000396 Escherichia coli K-12 MG1655 section 286 ...    29  3.0
gb|AE000466.1|AE000466 Escherichia coli K-12 MG1655 section 356 ...    26  3.4
gb|AE000482.1|AE000482 Escherichia coli K-12 MG1655 section 372 ...    29  4.1
gb|AE000341.1|AE000341 Escherichia coli K-12 MG1655 section 231 ...    29  4.1
gb|AE000198.1|AE000198 Escherichia coli K-12 MG1655 section 88 o...    29  4.1
gb|AE000367.1|AE000367 Escherichia coli K-12 MG1655 section 257 ...    29  4.1
gb|AE000136.1|AE000136 Escherichia coli K-12 MG1655 section 26 o...    29  4.1
gb|AE000327.1|AE000327 Escherichia coli K-12 MG1655 section 217 ...    28  5.7
gb|AE000498.1|AE000498 Escherichia coli K-12 MG1655 section 388 ...    28  7.8
gb|AE000509.1|AE000509 Escherichia coli K-12 MG1655 section 399 ...    28  7.8
gb|AE000306.1|AE000306 Escherichia coli K-12 MG1655 section 196 ...    28  7.8
gb|AE000203.1|AE000203 Escherichia coli K-12 MG1655 section 93 o...    28  7.8
gb|AE000208.1|AE000208 Escherichia coli K-12 MG1655 section 98 o...    28  7.8

>gb|AE000479.1|AE000479 Escherichia coli K-12 MG1655 section 369 of 400 of the complete
            genome
          Length = 10934

 Score = 33.6 bits (67), Expect = 0.13
 Identities = 11/26 (42%), Positives = 16/26 (61%)
 Frame = +1 / -2

                                      
Query: 1057 SAYWSIFPPLGCWWSTLGPRGSLSPL 1134
            +A W++FPP+G  W  L  +   SPL
Sbjct: 5893 AAVWALFPPVGSQWGCLASQWRTSPL 5816


>gb|AE000302.1|AE000302 Escherichia coli K-12 MG1655 section 192 of 400 of the complete
            genome
          Length = 10264

 Score = 31.3 bits (62), Expect = 0.61
 Identities = 8/17 (47%), Positives = 13/17 (76%)
 Frame = +2 / +2

                             
Query: 2177 WSVCWPITLAKNSPHQC 2227
            +  CWP+ L ++SP+QC
Sbjct: 1157 YPACWPLPLRRSSPYQC 1207


>gb|AE000277.1|AE000277 Escherichia coli K-12 MG1655 section 167 of 400 of the complete
            genome
          Length = 11653

 Score = 30.8 bits (61), Expect = 0.84
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +2 / -3

                                     
Query: 2174 CWSVCWPITLAKNSPHQCRLPIRKW 2248
            CW     + L K+ P QCR+ + +W
Sbjct: 4931 CWLTASVLRLQKSLPRQCRITVVRW 4857


>gb|AE000168.1|AE000168 Escherichia coli K-12 MG1655 section 58 of 400 of the complete genome
          Length = 12663

 Score = 29.5 bits (58), Expect = 2.2
 Identities = 12/41 (29%), Positives = 24/41 (58%)
 Frame = -1 / +1

                                                     
Query: 2813 KEHFRGKVVSLSKRTEWSQG*EMQDKQMGSEKTFMRTAKTI 2691
            K H RG+ V + ++   ++  E+ D++ G+ +   RT +TI
Sbjct: 13   KRHLRGE*VKVGEKYITARRGELPDQEPGNGEASYRTMRTI 135


>gb|AE000400.1|AE000400 Escherichia coli K-12 MG1655 section 290 of 400 of the complete
            genome
          Length = 14295

 Score = 29.0 bits (57), Expect = 3.0
 Identities = 7/18 (38%), Positives = 10/18 (54%)
 Frame = +2 / +3

                              
Query: 2165 WATCWSVCWPITLAKNSP 2218
            W TCW+ CW      ++P
Sbjct: 9096 WITCWNCCWQAGWISSAP 9149


>gb|AE000408.1|AE000408 Escherichia coli K-12 MG1655 section 298 of 400 of the complete
            genome
          Length = 10944

 Score = 29.0 bits (57), Expect = 3.0
 Identities = 17/39 (43%), Positives = 20/39 (50%)
 Frame = -3 / +1

                                                   
Query: 1020 LSPHAQFLLVSLNLSCNLDTNLPRASPPTSSTFTLPHRA 904
            L+  A FLLV + +S   DT LPR    T  TF    RA
Sbjct: 7618 LTSTAAFLLV*VKISRACDTFLPRIRSATRRTF*AEERA 7734


>gb|AE000438.1|AE000438 Escherichia coli K-12 MG1655 section 328 of 400 of the complete
            genome
          Length = 10426

 Score = 29.0 bits (57), Expect = 3.0
 Identities = 10/28 (35%), Positives = 12/28 (42%)
 Frame = +2 / +3

                                        
Query: 2165 WATCWSVCWPITLAKNSPHQCRLPIRKW 2248
            WA CW  C  + +A NS    R     W
Sbjct: 750  WACCWRTCSLVVVALNSLRAVRQSSTSW 833


>gb|AE000396.1|AE000396 Escherichia coli K-12 MG1655 section 286 of 400 of the complete
           genome
          Length = 10098

 Score = 29.0 bits (57), Expect = 3.0
 Identities = 9/27 (33%), Positives = 18/27 (66%)
 Frame = -3 / -1

                                      
Query: 633 PPSKIYLLAPYHQYKLLLKTSSFASVF 553
           PP++ YLL+P H+++++   S +   F
Sbjct: 309 PPARFYLLSPVHEWRVIAS*SWYHQSF 229


>gb|AE000466.1|AE000466 Escherichia coli K-12 MG1655 section 356 of 400 of the complete
            genome
          Length = 10208

 Score = 26.3 bits (51), Expect(2) = 3.4
 Identities = 11/26 (42%), Positives = 14/26 (53%)
 Frame = +3 / +2

                                      
Query: 2796 SPEVFLPCFTARWFLLAWPLSLSCLC 2873
            S  V L C T  ++L  W L+LS  C
Sbjct: 5579 SSAVVLRCLTTVFWLPVWALTLSICC 5656


 Score = 20.3 bits (38), Expect(2) = 3.4
 Identities = 4/11 (36%), Positives = 7/11 (63%)
 Frame = +3 / +1

                       
Query: 2892 LKKEKQGSWFD 2924
            +K+  +G W D
Sbjct: 5737 MKRPFKGDWLD 5769


>gb|AE000482.1|AE000482 Escherichia coli K-12 MG1655 section 372 of 400 of the complete genome
          Length = 20906

 Score = 28.6 bits (56), Expect = 4.1
 Identities = 14/48 (29%), Positives = 19/48 (39%)
 Frame = +3 / +1

                                                             
Query: 660   SQCQKSQGQVRLSSLRPHPVEPHPRVGQSTPRSREGRSQGWA*KSGQS 803
             S+C    G  R    RP  + P       +P    GR +GW    GQ+
Sbjct: 20239 SRCALILGPARRWVHRPESLSPAASAHGQSPHVAAGRRRGWKRADGQN 20382


>gb|AE000341.1|AE000341 Escherichia coli K-12 MG1655 section 231 of 400 of the complete
            genome
          Length = 10231

 Score = 28.6 bits (56), Expect = 4.1
 Identities = 12/20 (60%), Positives = 13/20 (65%)
 Frame = -2 / +2

                                
Query: 2995 PGD*HCRFRVTVSGGGREEG 2936
            PG  H  +R TVSG GRE G
Sbjct: 7538 PGWLHAVYRETVSGSGREAG 7597


>gb|AE000198.1|AE000198 Escherichia coli K-12 MG1655 section 88 of 400 of the complete genome
          Length = 11639

 Score = 28.6 bits (56), Expect = 4.1
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = +1 / +3

                                   
Query: 2332  FPKSNY*TGGYYEGP*ASGFCL 2397
             F +S  * GGY+ GP +S FC+
Sbjct: 10947 FQRSGG*PGGYHAGPGSSPFCV 11012


>gb|AE000367.1|AE000367 Escherichia coli K-12 MG1655 section 257 of 400 of the complete
            genome
          Length = 11438

 Score = 28.6 bits (56), Expect = 4.1
 Identities = 8/27 (29%), Positives = 13/27 (47%)
 Frame = +3 / -2

                                       
Query: 1332 CFLSPSFLWLSSCHRKGISNRVQFRMG 1412
            C  + +F+W + CH+  I     F  G
Sbjct: 7990 CLFAAAFVWFAKCHQPVIGRNTTFSKG 7910


>gb|AE000136.1|AE000136 Escherichia coli K-12 MG1655 section 26 of 400 of the complete genome
          Length = 16823

 Score = 28.6 bits (56), Expect = 4.1
 Identities = 11/23 (47%), Positives = 12/23 (51%)
 Frame = -2 / +1

                                    
Query: 2860  RLSGQARRNHLAVKHGRNTSGER 2792
             RLSG+ RR   A  H    SG R
Sbjct: 13873 RLSGKVRRRGSAASHFLYLSGSR 13941


>gb|AE000327.1|AE000327 Escherichia coli K-12 MG1655 section 217 of 400 of the complete
            genome
          Length = 10048

 Score = 28.1 bits (55), Expect = 5.7
 Identities = 9/19 (47%), Positives = 12/19 (62%)
 Frame = +1 / +2

                               
Query: 1231 WTTSRAPLPH*VSCTVTSC 1287
            W  S  P+PH   C+V+SC
Sbjct: 2426 WRQSLYPIPHCYRCSVSSC 2482


>gb|AE000498.1|AE000498 Escherichia coli K-12 MG1655 section 388 of 400 of the complete
            genome
          Length = 10264

 Score = 27.6 bits (54), Expect = 7.8
 Identities = 8/18 (44%), Positives = 10/18 (55%)
 Frame = +3 / +3

                              
Query: 2670 YAVFYITYCFSCPHECLF 2723
            +   + T C SCPH C F
Sbjct: 4278 FITLHFT*CVSCPHNCSF 4331


>gb|AE000509.1|AE000509 Escherichia coli K-12 MG1655 section 399 of 400 of the complete
           genome
          Length = 10589

 Score = 27.6 bits (54), Expect = 7.8
 Identities = 8/17 (47%), Positives = 12/17 (70%)
 Frame = -2 / -3

                            
Query: 682 PWLFWHWLRSWTSNPQP 632
           P L W+W+R   S+P+P
Sbjct: 261 PSLLWYWVRRCLSSPRP 211


>gb|AE000306.1|AE000306 Escherichia coli K-12 MG1655 section 196 of 400 of the complete
            genome
          Length = 10446

 Score = 27.6 bits (54), Expect = 7.8
 Identities = 7/18 (38%), Positives = 12/18 (65%)
 Frame = +3 / +1

                              
Query: 1341 SPSFLWLSSCHRKGISNR 1394
            +P+  W+S CHR+ +  R
Sbjct: 136  TPAGCWISGCHRRSVQQR 189


>gb|AE000203.1|AE000203 Escherichia coli K-12 MG1655 section 93 of 400 of the complete genome
          Length = 10751

 Score = 27.6 bits (54), Expect = 7.8
 Identities = 13/47 (27%), Positives = 23/47 (48%)
 Frame = +1 / +3

                                                           
Query: 1156 LLWATLR*RLMARKCSVPLVMAWLTWTTSRAPLPH*VSCTVTSCTWI 1296
            +L  T R    A   +  +V +   WT S  P P  + C+++S +W+
Sbjct: 1554 ILRLTYRLPTWAEPVTWAMVSSMRVWTPSVRP*PEALICSISSGSWL 1694


>gb|AE000208.1|AE000208 Escherichia coli K-12 MG1655 section 98 of 400 of the complete genome
          Length = 10619

 Score = 27.6 bits (54), Expect = 7.8
 Identities = 10/25 (40%), Positives = 15/25 (60%)
 Frame = -3 / +3

                                     
Query: 981  LSCNLDTNLPRASPPTSSTFTLPHR 907
            ++C L      + P  ++TFTLPHR
Sbjct: 2829 VACTLTCKYRLSLPQRANTFTLPHR 2903


  Database: ecoli.nt
    Posted date:  Jun 14, 2001  3:27 PM
  Number of letters in database: 4,662,239
  Number of sequences in database:  400
  
Lambda     K      H
   0.318    0.135    0.401 


Matrix: BLOSUM62
Number of Hits to DB: 31907970
Number of Sequences: 400
Number of extensions: 491769
Number of successful extensions: 23184
Number of sequences better than 10.0: 20
length of query: 1000
length of database: 1,554,079
effective HSP length: 47
effective length of query: 953
effective length of database: 1,535,279
effective search space: 1463120887
effective search space used: 1463120887
frameshift window, decay const: 50,  0.1
T: 13
A: 40
X1: 16 ( 7.3 bits)
X2: 0 ( 0.0 bits)
S1: 41 (21.7 bits)
S2: 53 (27.2 bits)
