format-version: 1.2
idspace: rdf http://www.w3.org/1999/02/22-rdf-syntax-ns# ""
idspace: rdfs http://www.w3.org/2000/01/rdf-schema# ""
idspace: owl http://www.w3.org/2002/07/owl# ""
idspace: xsd http://www.w3.org/2001/XMLSchema# ""
idspace: dc http://purl.org/dc/elements/1.1/ ""
idspace: eor http://dublincore.org/2000/03/13/eor# ""
idspace: serql http://www.openrdf.org/schema/serql# ""
idspace: obd http://www.bioontology.org/obd/obd-ontology# ""
idspace: oboInOwl http://www.bioontology.org/oboInOwl# ""
idspace: ncithesaurus http://ncicb.nci.nih.gov/xml/owl/EVS/Thesaurus.owl# ""
idspace: biopax1 http://www.biopax.org/release/biopax-level1.owl# ""
idspace: mged http://mged.sourceforge.net/ontologies/MGEDOntology.owl# ""
idspace: bfo http://www.ifomis.org/bfo/1.0# ""
idspace: snap http://www.ifomis.org/bfo/1.0/snap# ""
idspace: span http://www.ifomis.org/bfo/1.0/span# ""
idspace: oban http://www.berkeleybop.org/ontologies/oban/alpha# ""
idspace: obi http://obi.sourceforge.net/ontology/OBI.owl# ""
idspace: galen http://www.co-ode.org/ontologies/galen# ""
idspace: propreo http://lsdis.cs.uga.edu/projects/glycomics/propreo# ""
idspace: swrl http://www.w3.org/2003/11/swrl# ""
idspace: p2 http://www.owl-ontologies.com/assert.owl# ""
idspace: daml http://www.daml.org/2001/03/daml+oil# ""
idspace: protege http://protege.stanford.edu/plugins/owl/protege# ""

[Term]
id: mged:Action
comment: Procedures used during treatment.
is_a: mged:BiologicalFactorCategory
is_a: mged:BioMaterialPackage
property_value: mged:class_role "abstract" xsd:string
property_value: mged:unique_identifier "MO_193" xsd:string
property_value: mged:class_source "ontology" xsd:string

[Term]
id: mged:Age
comment: The time period elapsed since an identifiable point in the life cycle of an organism. If a developmental stage is specified, the identifiable point would be the beginning of that stage. Otherwise the identifiable point must be specified such as planting (e.g. 3 days post planting).
is_a: mged:BioMaterialCharacteristics
relationship: mged:has_initial_time_point mged:InitialTimePoint
relationship: mged:has_measurement mged:Measurement
relationship: mged:has_maximum_measurement mged:Measurement
property_value: mged:class_role "abstract" xsd:string
property_value: mged:unique_identifier "MO_178" xsd:string
property_value: mged:class_source "ontology" xsd:string

[Term]
id: mged:Allele
comment: One of two or more alternative forms of a gene or marker sequence and differing from other alleles at one or more mutational sites based on phenotype or sequence. Polymorphisms are included in this definition.
is_a: mged:IndividualGeneticCharacteristics
property_value: mged:class_source "ontology" xsd:string
property_value: mged:unique_identifier "MO_58" xsd:string
property_value: mged:class_role "concrete" xsd:string

[Term]
id: mged:ArrayDesignPackage
comment: MAGE package that describes the array layout and design. The array may be physical or  virtual.
is_a: mged:MGEDCoreOntology
property_value: mged:unique_identifier "MO_33" xsd:string
property_value: mged:class_role "abstract" xsd:string
property_value: mged:class_source "mage" xsd:string

[Term]
id: mged:ArrayGroup
comment: An array group is a physical platform that contains one or more arrays that are separately addressable or a virtual grouping of arrays. 
is_a: mged:ArrayPackage
relationship: mged:has_fiducials mged:Fiducial
relationship: mged:has_type mged:SubstrateType
property_value: mged:class_role "concrete" xsd:string
property_value: mged:unique_identifier "MO_34" xsd:string
property_value: mged:class_source "mage" xsd:string

[Term]
id: mged:ArrayPackage
comment: MAGE package for describing the process by which arrays were manufactured.
is_a: mged:MGEDCoreOntology
property_value: mged:class_role "abstract" xsd:string
property_value: mged:unique_identifier "MO_107" xsd:string
property_value: mged:class_source "mage" xsd:string

[Term]
id: mged:Atmosphere
comment: The atmospheric conditions used to culture or grow an organism.
is_a: mged:GrowthCondition
relationship: mged:has_atmospheric_component mged:Compound
property_value: mged:class_role "abstract" xsd:string
property_value: mged:unique_identifier "MO_219" xsd:string
property_value: mged:class_source "ontology" xsd:string

[Term]
id: mged:AtomicAction
comment: An atomic action  is a single step process on the biomaterial, e.g. mix by inversion, wait, add
is_a: mged:Action
property_value: mged:unique_identifier "MO_68" xsd:string
property_value: mged:class_role "concrete" xsd:string
property_value: mged:class_source "ontology" xsd:string

[Term]
id: mged:AuditAndSecurityPackage
comment: MAGE package for contacts including organizations and people.
is_a: mged:MGEDCoreOntology
property_value: mged:class_role "abstract" xsd:string
property_value: mged:unique_identifier "MO_172" xsd:string
property_value: mged:class_source "mage" xsd:string

[Term]
id: mged:BarrierFacility
comment: Rating of containment system for the protection of organisms from infectious agents.
is_a: mged:GrowthCondition
property_value: mged:class_source "ontology" xsd:string
property_value: mged:class_role "abstract" xsd:string
property_value: mged:unique_identifier "MO_97" xsd:string

[Term]
id: mged:Bedding
comment: Refers to the bedding material present in an animals housing.
is_a: mged:EnvironmentalHistory
property_value: mged:unique_identifier "MO_154" xsd:string
property_value: mged:class_role "place_holder" xsd:string
property_value: mged:class_source "ontology" xsd:string

[Term]
id: mged:BibliographicReference
comment: A bibliographic reference is a published citation in a journal, book, other format e.g. web resource
is_a: mged:DescriptionPackage
relationship: mged:has_volume xsd:string
relationship: mged:has_issue xsd:string
relationship: mged:has_type mged:PublicationType
relationship: mged:has_pages xsd:string
relationship: mged:has_publisher xsd:string
relationship: mged:has_URI mged:URI
relationship: mged:has_title xsd:string
relationship: mged:has_editor xsd:string
relationship: mged:has_year xsd:date
relationship: mged:has_authors xsd:string
relationship: mged:has_publication xsd:string
property_value: mged:class_source "mage" xsd:string
property_value: mged:unique_identifier "MO_201" xsd:string
property_value: mged:class_role "concrete" xsd:string

[Term]
id: mged:BioAssay
comment: A bioassay is an abstract class representing physical and computational groupings of biomaterials and arrays.
is_a: mged:BioAssayPackage
property_value: mged:class_source "mage" xsd:string
property_value: mged:unique_identifier "MO_56" xsd:string
property_value: mged:class_role "abstract" xsd:string

[Term]
id: mged:BioAssayData
comment: BioAssayData refers to the data files including images generated from one or more BioAssays.
is_a: mged:BioAssayDataPackage
property_value: mged:unique_identifier "MO_40" xsd:string

[Term]
id: mged:BioAssayDataCluster
comment: A grouping of bioassay data that has been organized by one or more mathematical functions into nodes.
is_a: mged:HigherLevelAnalysisPackage
relationship: mged:has_nodes mged:Node
property_value: mged:class_source "mage" xsd:string
property_value: mged:unique_identifier "MO_116" xsd:string
property_value: mged:class_role "concrete" xsd:string

[Term]
id: mged:BioAssayDataPackage
comment: MAGE package for BioAssayData.
is_a: mged:MGEDExtendedOntology
property_value: mged:unique_identifier "MO_186" xsd:string

[Term]
id: mged:BioAssayPackage
comment: MAGE package for bioassay.
is_a: mged:MGEDCoreOntology
property_value: mged:class_source "mage" xsd:string
property_value: mged:unique_identifier "MO_0" xsd:string
property_value: mged:class_role "abstract" xsd:string

[Term]
id: mged:BioMaterial
comment: Description of the processing state of the biomaterial for use in the microarray hybridization.
is_a: mged:BioMaterialPackage
relationship: mged:has_type mged:MaterialType
relationship: mged:has_biomaterial_characteristics mged:BioMaterialCharacteristics
property_value: mged:unique_identifier "MO_226" xsd:string
property_value: mged:class_source "mage" xsd:string
property_value: mged:class_role "abstract" xsd:string

[Term]
id: mged:BioMaterialCharacteristicCategory
comment: General descriptor of a BioMaterialCharacteristic category.  Such as strain or line where the name of the strain or line is encoded in the FactorValue.  
is_a: mged:BiologicalFactorCategory
property_value: mged:unique_identifier "MO_100" xsd:string

[Term]
id: mged:BioMaterialCharacteristics
comment: Properties of the biomaterial before treated in any manner for the purposes of the experiment.
is_a: mged:BiologicalFactorCategory
is_a: mged:BioMaterialPackage
property_value: mged:class_source "ontology" xsd:string
property_value: mged:class_role "abstract" xsd:string
property_value: mged:unique_identifier "MO_5" xsd:string

[Term]
id: mged:BioMaterialPackage
comment: Description of the source of the nucleic acid used to generate labeled material for the microarray experiment. 
is_a: mged:MGEDCoreOntology
property_value: mged:class_role "abstract" xsd:string
property_value: mged:unique_identifier "MO_182" xsd:string
property_value: mged:class_source "mage" xsd:string

[Term]
id: mged:BioMaterialPurity
comment: A measure of homogeneity of a biomaterial. For example, an expression of the  percentage of a tumor biopsy that is tumor cells.
is_a: mged:BioMaterialCharacteristics
property_value: mged:class_source "ontology" xsd:string
property_value: mged:class_role "abstract" xsd:string
property_value: mged:unique_identifier "MO_20" xsd:string

[Term]
id: mged:BioMolecularAnnotation
comment: BioMolecularAnnotation experiment design types are those which are designed to investigate functions, processes, locations and identity at the molecular level e.g. binding site identification, genotyping.
is_a: mged:ExperimentDesignType
property_value: mged:class_role "concrete" xsd:string
property_value: mged:class_source "ontology" xsd:string
property_value: mged:unique_identifier "MO_213" xsd:string

[Term]
id: mged:BioSample
comment: The BioSource after any treatment.
is_a: mged:BioMaterial
relationship: mged:has_been_treated mged:Treatment
relationship: mged:has_type mged:BioSampleType
property_value: mged:class_role "concrete" xsd:string
property_value: mged:class_source "mage" xsd:string
property_value: mged:unique_identifier "MO_93" xsd:string

[Term]
id: mged:BioSampleType
comment: Used to tell when the BioSample is an extract or not.
is_a: mged:BioMaterialPackage
property_value: mged:class_role "concrete" xsd:string
property_value: mged:unique_identifier "MO_161" xsd:string
property_value: mged:class_source "ontology" xsd:string

[Term]
id: mged:BioSequence
comment: A representation of a DNA, RNA, or protein sequence. 
is_a: mged:BioSequencePackage
relationship: mged:has_species mged:Organism
relationship: mged:has_type mged:BioSequenceType
relationship: mged:has_type mged:PolymerType
property_value: mged:unique_identifier "MO_163" xsd:string
property_value: mged:class_source "mage" xsd:string
property_value: mged:class_role "concrete" xsd:string

[Term]
id: mged:BioSequencePackage
comment: MAGE package for biological sequences (biosequence).
is_a: mged:MGEDCoreOntology
property_value: mged:class_role "abstract" xsd:string
property_value: mged:unique_identifier "MO_191" xsd:string
property_value: mged:class_source "mage" xsd:string

[Term]
id: mged:BioSequenceType
comment: Controlled terms for descriptors indicating the type of biosequence. Types may be physical (e.g. BAC, cDNA clone), or  computational (e.g. unigene cluster, consensus).
is_a: mged:BioSequencePackage
property_value: mged:unique_identifier "MO_152" xsd:string
property_value: mged:class_role "abstract" xsd:string
property_value: mged:class_source "ontology" xsd:string

[Term]
id: mged:BioSource
comment: The BioSource is the original source material before any treatment events. 
is_a: mged:BioMaterial
property_value: mged:unique_identifier "MO_77" xsd:string
property_value: mged:class_role "concrete" xsd:string
property_value: mged:class_source "mage" xsd:string

[Term]
id: mged:BioSourceProvider
comment: The resource (e.g. company, hospital, geographical location) used to obtain or purchase the biomaterial. 
is_a: mged:BioMaterialCharacteristics
relationship: mged:has_owner mged:Person
relationship: mged:has_donor mged:Organization
property_value: mged:class_source "ontology" xsd:string
property_value: mged:class_role "abstract" xsd:string
property_value: mged:unique_identifier "MO_230" xsd:string

[Term]
id: mged:BioSourceType
comment: The form in which the BioMaterial was obtained/maintained e.g. frozen, fresh etc. Note can be used to describe BioSamples as well as BioSources.
is_a: mged:BioMaterialCharacteristics
property_value: mged:class_role "concrete" xsd:string
property_value: mged:unique_identifier "MO_95" xsd:string
property_value: mged:class_source "ontology" xsd:string

[Term]
id: mged:BiologicalFactorCategory
comment: Factors that relate to properties of the biomaterial, its treatment, or \n    its growth.
is_a: mged:ExperimentalFactorCategory
property_value: mged:unique_identifier "MO_190" xsd:string
property_value: mged:class_role "abstract" xsd:string
property_value: mged:class_source "ontology" xsd:string

[Term]
id: mged:BiologicalProperty
comment: A biological property experiment design type is where an intrinsic characteristic of an organism(s) or biological system is examined.
is_a: mged:ExperimentDesignType
property_value: mged:class_source "ontology" xsd:string
property_value: mged:class_role "concrete" xsd:string
property_value: mged:unique_identifier "MO_224" xsd:string

[Term]
id: mged:Biometrics
comment: Physical properties of the BioMaterial e. g. mass or height
is_a: mged:BioMaterialCharacteristics
relationship: mged:has_individual mged:Individual
relationship: mged:has_length mged:Measurement
relationship: mged:has_cubic_volume mged:Measurement
relationship: mged:has_mass mged:Measurement
relationship: mged:has_diameter mged:Measurement
relationship: mged:has_height mged:Measurement
relationship: mged:has_organism_part mged:OrganismPart
property_value: mged:class_source "ontology" xsd:string
property_value: mged:class_role "abstract" xsd:string
property_value: mged:unique_identifier "MO_129" xsd:string

[Term]
id: mged:CancerSite
comment: class to hold instances used as the filler for the property has_cancer_site
is_a: mged:MGEDCoreOntology
property_value: mged:unique_identifier "MO_26" xsd:string
property_value: mged:class_source "ontology" xsd:string
property_value: mged:class_role "concrete" xsd:string

[Term]
id: mged:CellLine
comment: The identifier for the established culture of a metazoan cell if one was used as a biomaterial.\n
is_a: mged:BioMaterialCharacteristics
is_a: mged:OntologyEntry
relationship: mged:has_database mged:CellLineDatabase
property_value: mged:unique_identifier "MO_49" xsd:string
property_value: mged:class_source "ontology" xsd:string
property_value: mged:class_role "abstract" xsd:string

[Term]
id: mged:CellLineDatabase
comment: Database of cell line information.
is_a: mged:Database
property_value: mged:class_source "ontology" xsd:string
property_value: mged:class_role "concrete" xsd:string
property_value: mged:unique_identifier "MO_145" xsd:string

[Term]
id: mged:CellType
comment: CellType, the type of cell used in the experiment if non mixed, if mixed the TargetedCellType should be used, example of instances, epithelial, glial etc.
is_a: mged:OntologyEntry
is_a: mged:BioMaterialCharacteristics
relationship: mged:has_database mged:CellTypeDatabase
property_value: mged:class_source "ontology" xsd:string
property_value: mged:unique_identifier "MO_135" xsd:string
property_value: mged:class_role "abstract" xsd:string

[Term]
id: mged:CellTypeDatabase
comment: Database of cell type information.
is_a: mged:Database
property_value: mged:unique_identifier "MO_141" xsd:string
property_value: mged:class_role "concrete" xsd:string
property_value: mged:class_source "ontology" xsd:string

[Term]
id: mged:ChromosomalAberration
comment: An abnormality of a chromosome's number or structure, which excludes simple changes in sequence and is usually detectable by cytogenetic and microscopic techniques such as FISH.
is_a: mged:DeprecatedTerms
relationship: mged:has_chromosomal_aberration_classification mged:ChromosomalAberrationClassification
property_value: mged:class_role "abstract" xsd:string
property_value: mged:class_source "ontology" xsd:string
property_value: mged:unique_identifier "MO_78" xsd:string
property_value: mged:deprecation_in_version "1.1.7" xsd:string
property_value: mged:deprecation_reason "deleted_term" xsd:string
property_value: mged:deprecation_old_restriction "some|has_chromosomal_aberration_classification|ChromosomalAberrationClassification" xsd:string

[Term]
id: mged:ChromosomalAberrationClassification
comment: An irregularity in the number or structure of chromosomes, usually in the form of a gain (duplication), loss (deletion), exchange (translocation), or alteration in sequence (inversion) of genetic material. Excludes simple changes in sequence such as mutations, and is usually detectable by cytogenetic and microscopic techniques such as FISH.
is_a: mged:BioMaterialCharacteristics
property_value: mged:class_role "concrete" xsd:string
property_value: mged:unique_identifier "MO_6" xsd:string
property_value: mged:class_source "ontology" xsd:string

[Term]
id: mged:ClinicalHistory
comment: The BioMaterial's (i.e., the patient's) medical record as background information relevant to the experiment.
is_a: mged:EnvironmentalHistory
relationship: mged:has_clinical_record mged:OntologyEntry
relationship: mged:has_clinical_treatment mged:ClinicalTreatment
relationship: mged:has_test_type mged:TestType
relationship: mged:has_prior_disease_state mged:DiseaseState
relationship: mged:has_clinical_finding mged:TestResult
property_value: mged:unique_identifier "MO_189" xsd:string
property_value: mged:class_source "ontology" xsd:string
property_value: mged:class_role "abstract" xsd:string

[Term]
id: mged:ClinicalTreatment
comment: The current clinical treatment(s) of the patient from which the biosource is derived.
is_a: mged:OntologyEntry
is_a: mged:BioMaterialCharacteristics
relationship: mged:has_database mged:ClinicalTreatmentDatabase
property_value: mged:class_role "abstract" xsd:string
property_value: mged:class_source "ontology" xsd:string
property_value: mged:unique_identifier "MO_69" xsd:string

[Term]
id: mged:ClinicalTreatmentDatabase
comment: Database of clinical treatment information
is_a: mged:Database
property_value: mged:class_role "concrete" xsd:string
property_value: mged:class_source "ontology" xsd:string
property_value: mged:unique_identifier "MO_114" xsd:string

[Term]
id: mged:ComplexAction
comment: Complex actions are composed of multiple steps (as opposed to AtomicAction) e.g. mRNA labeling, protein purification.
is_a: mged:Action
property_value: mged:class_source "ontology" xsd:string
property_value: mged:unique_identifier "MO_90" xsd:string
property_value: mged:class_role "concrete" xsd:string

[Term]
id: mged:Compound
comment: A drug, solvent, chemical, etc., with a property that can be measured such as concentration.
is_a: mged:BiologicalFactorCategory
is_a: mged:OntologyEntry
relationship: mged:has_database mged:CompoundDatabase
relationship: mged:is_solvent xsd:boolean
property_value: mged:unique_identifier "MO_70" xsd:string
property_value: mged:class_source "ontology" xsd:string
property_value: mged:class_role "abstract" xsd:string

[Term]
id: mged:CompoundDatabase
comment: Database of compound information.
is_a: mged:Database
property_value: mged:class_role "concrete" xsd:string
property_value: mged:unique_identifier "MO_151" xsd:string
property_value: mged:class_source "ontology" xsd:string

[Term]
id: mged:ConcentrationUnit
comment: Units used for concentration measurements.
is_a: mged:Unit
property_value: mged:class_source "ontology" xsd:string
property_value: mged:unique_identifier "MO_61" xsd:string
property_value: mged:class_role "concrete" xsd:string

[Term]
id: mged:ConcentrationUnitOther
comment: Concentration units not specified in MAGE.
is_a: mged:ConcentrationUnit
property_value: mged:class_source "ontology" xsd:string
property_value: mged:unique_identifier "MO_86" xsd:string
property_value: mged:class_role "concrete" xsd:string

[Term]
id: mged:Contact
comment: Organizations or individuals that may be contacted.
is_a: mged:AuditAndSecurityPackage
relationship: mged:has_type mged:Roles
relationship: mged:has_email xsd:string
relationship: mged:has_toll_free_phone xsd:string
relationship: mged:has_fax xsd:string
relationship: mged:has_phone xsd:string
relationship: mged:has_address xsd:string
relationship: mged:has_URI mged:URI
property_value: mged:unique_identifier "MO_147" xsd:string
property_value: mged:class_role "abstract" xsd:string
property_value: mged:class_source "mage" xsd:string

[Term]
id: mged:ControlType
comment: Controlled terms for descriptors for the type of control design element.
is_a: mged:DesignElementPackage
property_value: mged:class_role "concrete" xsd:string
property_value: mged:class_source "ontology" xsd:string
property_value: mged:unique_identifier "MO_50" xsd:string

[Term]
id: mged:Cultivar
comment:  a plant variety obtained in agriculture in horticulture
is_a: mged:StrainOrLine
relationship: mged:has_database mged:StrainOrLineDatabase
property_value: mged:class_role "abstract" xsd:string
property_value: mged:unique_identifier "MO_124" xsd:string
property_value: mged:class_source "ontology" xsd:string

[Term]
id: mged:DataTransformationProtocolType
comment: The process by which derived BioAssays are created from measured BioAssays and/or derived BioAssays.
is_a: mged:ProtocolType
property_value: mged:class_role "concrete" xsd:string
property_value: mged:unique_identifier "MO_165" xsd:string
property_value: mged:class_source "ontology" xsd:string

[Term]
id: mged:DataType
comment: Primitive data types found in computing languages such as float, boolean, etc. 
is_a: mged:MGEDCoreOntology
property_value: mged:unique_identifier "MO_125" xsd:string
property_value: mged:class_source "ontology" xsd:string
property_value: mged:class_role "concrete" xsd:string

[Term]
id: mged:Database
comment: Identifiable resource containing data or external ontologies or controlled vocabularies which has uniquely identifiable records.
is_a: mged:DescriptionPackage
relationship: mged:has_version xsd:string
relationship: mged:has_URI mged:URI
property_value: mged:class_source "ontology" xsd:string
property_value: mged:unique_identifier "MO_118" xsd:string
property_value: mged:class_role "abstract" xsd:string

[Term]
id: mged:DatabaseEntryType
comment: Controlled set of descriptors for the type of database record such as a protein record (in SWISS-PROT) or a gene object (in SGD).
is_a: mged:DescriptionPackage
property_value: mged:unique_identifier "MO_157" xsd:string
property_value: mged:class_role "concrete" xsd:string
property_value: mged:class_source "ontology" xsd:string

[Term]
id: mged:DefectType
comment: Defects associated with features or zones such as those that are missing or moved. 
is_a: mged:ArrayPackage
property_value: mged:class_source "ontology" xsd:string
property_value: mged:unique_identifier "MO_16" xsd:string
property_value: mged:class_role "concrete" xsd:string

[Term]
id: mged:DeliveryMethod
comment: Method used to deliver a compound for treatment.
is_a: mged:MGEDExtendedOntology
property_value: mged:unique_identifier "MO_223" xsd:string

[Term]
id: mged:DeprecatedTerms
comment: Class to hold deprecated instances and classes.
is_a: mged:MGEDCoreOntology
relationship: mged:has_reason_for_deprecation mged:DeprecationReason
property_value: mged:class_source "ontology" xsd:string
property_value: mged:class_role "concrete" xsd:string
property_value: mged:unique_identifier "MO_206" xsd:string

[Term]
id: mged:DeprecationReason
comment: class to hold instances used as the filler for the property has_reason_for_deprecation
is_a: mged:MGEDCoreOntology
property_value: mged:unique_identifier "MO_94" xsd:string
property_value: mged:class_source "ontology" xsd:string
property_value: mged:class_role "concrete" xsd:string

[Term]
id: mged:DerivedBioAssay
comment: A BioAssay that is created by the transformation of measured or derived BioAssays.
is_a: mged:BioAssay
relationship: mged:has_type mged:DerivedBioAssayType
property_value: mged:unique_identifier "MO_209" xsd:string
property_value: mged:class_source "mage" xsd:string
property_value: mged:class_role "concrete" xsd:string

[Term]
id: mged:DerivedBioAssayType
comment: Controlled set of descriptors for the type of derivation of the BioAssay such as averaging features, taking ratios of signal QuantitationTypes, and normalizing BioAssay data. 
is_a: mged:BioAssayPackage
property_value: mged:class_role "concrete" xsd:string
property_value: mged:unique_identifier "MO_111" xsd:string
property_value: mged:class_source "ontology" xsd:string

[Term]
id: mged:DescriptionPackage
comment: MAGE package for description of annotations and references to annotations.
is_a: mged:MGEDCoreOntology
property_value: mged:class_role "abstract" xsd:string
property_value: mged:class_source "mage" xsd:string
property_value: mged:unique_identifier "MO_167" xsd:string

[Term]
id: mged:DesignElement
comment: Design elements are reporters, features, and composite elements as defined by MAGE.
is_a: mged:DesignElementPackage
relationship: mged:has_type mged:ControlType
property_value: mged:class_role "concrete" xsd:string
property_value: mged:unique_identifier "MO_173" xsd:string
property_value: mged:class_source "ontology" xsd:string

[Term]
id: mged:DesignElementGroup
comment: A DesignElementGroup holds information on Features, Reporters, or CompositeSequences.
is_a: mged:ArrayDesignPackage
relationship: mged:has_type mged:DesignElementGroupType
relationship: mged:has_species mged:Organism
property_value: mged:unique_identifier "MO_128" xsd:string
property_value: mged:class_role "abstract" xsd:string
property_value: mged:class_source "mage" xsd:string

[Term]
id: mged:DesignElementGroupType
comment: Controlled set of descriptors for indicating the specific type of a Feature, Reporter, or CompositeSequence. 
is_a: mged:ArrayDesignPackage
property_value: mged:class_source "ontology" xsd:string
property_value: mged:class_role "concrete" xsd:string
property_value: mged:unique_identifier "MO_14" xsd:string

[Term]
id: mged:DesignElementPackage
comment: The MAGE package for describing the elements located on the array.
is_a: mged:MGEDCoreOntology
property_value: mged:class_role "abstract" xsd:string
property_value: mged:class_source "mage" xsd:string
property_value: mged:unique_identifier "MO_15" xsd:string

[Term]
id: mged:DevelopmentalStage
comment: The developmental stage of the organism's life cycle during which the biomaterial was extracted. 
is_a: mged:BioMaterialCharacteristics
is_a: mged:OntologyEntry
relationship: mged:has_database mged:DevelopmentalStageDatabase
property_value: mged:unique_identifier "MO_120" xsd:string
property_value: mged:class_role "abstract" xsd:string
property_value: mged:class_source "ontology" xsd:string

[Term]
id: mged:DevelopmentalStageDatabase
comment: Database of developmental stage information.
is_a: mged:Database
property_value: mged:class_source "ontology" xsd:string
property_value: mged:class_role "concrete" xsd:string
property_value: mged:unique_identifier "MO_215" xsd:string

[Term]
id: mged:DiseaseLocation
comment: Anatomical location(s) of disease.
is_a: mged:OrganismPart
relationship: mged:has_cancer_site mged:CancerSite
property_value: mged:class_source "ontology" xsd:string
property_value: mged:unique_identifier "MO_37" xsd:string
property_value: mged:class_role "concrete" xsd:string

[Term]
id: mged:DiseaseStaging
comment: The stage or progression of a disease in an organism. Includes pathological staging of cancers and other disease progression. 
is_a: mged:OntologyEntry
is_a: mged:BioMaterialCharacteristics
relationship: mged:has_database mged:DiseaseStagingDatabase
property_value: mged:class_role "abstract" xsd:string
property_value: mged:unique_identifier "MO_133" xsd:string
property_value: mged:class_source "ontology" xsd:string

[Term]
id: mged:DiseaseStagingDatabase
comment: Database of disease staging information
is_a: mged:Database
property_value: mged:unique_identifier "MO_225" xsd:string
property_value: mged:class_source "ontology" xsd:string
property_value: mged:class_role "concrete" xsd:string

[Term]
id: mged:DiseaseState
comment: The name of the pathology diagnosed in the organism from which the biomaterial was derived. The disease state is normal if no disease has been diagnosed. 
is_a: mged:OntologyEntry
is_a: mged:BioMaterialCharacteristics
relationship: mged:has_database mged:DiseaseStateDatabase
relationship: mged:has_disease_staging mged:DiseaseStaging
relationship: mged:has_disease_location mged:DiseaseLocation
property_value: mged:unique_identifier "MO_126" xsd:string
property_value: mged:class_role "abstract" xsd:string
property_value: mged:class_source "ontology" xsd:string

[Term]
id: mged:DiseaseStateDatabase
comment: Database of disease state information.
is_a: mged:Database
property_value: mged:unique_identifier "MO_181" xsd:string
property_value: mged:class_source "ontology" xsd:string
property_value: mged:class_role "concrete" xsd:string

[Term]
id: mged:DistanceUnit
comment: Units used for distance measurements.
is_a: mged:Unit
property_value: mged:class_role "concrete" xsd:string
property_value: mged:unique_identifier "MO_4" xsd:string
property_value: mged:class_source "ontology" xsd:string

[Term]
id: mged:DistanceUnitOther
comment: Distance units not specified in MAGE.
is_a: mged:DistanceUnit
property_value: mged:class_source "ontology" xsd:string
property_value: mged:class_role "place_holder" xsd:string
property_value: mged:unique_identifier "MO_143" xsd:string

[Term]
id: mged:Ecotype
comment: a biotype resulting from selection in a particular habitat, e.g. the A. thaliana Ecotype Ler
is_a: mged:StrainOrLine
relationship: mged:has_database mged:StrainOrLineDatabase
property_value: mged:unique_identifier "MO_71" xsd:string
property_value: mged:class_role "abstract" xsd:string
property_value: mged:class_source "ontology" xsd:string

[Term]
id: mged:EnvironmentalFactorCategory
comment: Factors that relate to properties of the environmental history of the biomaterial, its treatment, or its growth.
is_a: mged:ExperimentalFactorCategory
property_value: mged:class_role "concrete" xsd:string
property_value: mged:class_source "ontology" xsd:string
property_value: mged:unique_identifier "MO_117" xsd:string

[Term]
id: mged:EnvironmentalHistory
comment: A description of the conditions the organism has been exposed to that are not one of the variables under study. 
is_a: mged:BioMaterialCharacteristics
property_value: mged:class_source "ontology" xsd:string
property_value: mged:unique_identifier "MO_55" xsd:string
property_value: mged:class_role "abstract" xsd:string

[Term]
id: mged:EnvironmentalStress
comment: Environmental stress is a treatment where some aspect of the environment is perturbed in order to stress the organism or culture, e.g. temperature shock, osmotic shock
is_a: mged:MGEDExtendedOntology
relationship: mged:has_measurement mged:Measurement
property_value: mged:unique_identifier "MO_227" xsd:string

[Term]
id: mged:EpidemiologicalDesign
comment: An epidemiological experiment design type is where the biosource history is studied e.g. environmental, clinical and family history.
is_a: mged:ExperimentDesignType
property_value: mged:unique_identifier "MO_142" xsd:string
property_value: mged:class_role "concrete" xsd:string
property_value: mged:class_source "ontology" xsd:string

[Term]
id: mged:Experiment
comment: The complete set of bioassays (hybridizations) and their descriptions performed as an experiment for a common purpose. Here we take experiment to mean an observational or perturbing study. An experiment will be often equivalent to a publication.
is_a: mged:ExperimentPackage
relationship: mged:has_bioassays mged:BioAssay
relationship: mged:has_citation mged:BibliographicReference
relationship: mged:has_experiment_design mged:ExperimentDesign
relationship: mged:has_providers mged:Contact
relationship: mged:has_bioassay_data mged:BioAssayData
property_value: mged:class_role "concrete" xsd:string
property_value: mged:unique_identifier "MO_112" xsd:string
property_value: mged:class_source "mage" xsd:string

[Term]
id: mged:ExperimentDesign
comment: ExperimentDesign refers to both observational and experimental (perturbational) studies. The organizing principles of the study including the relationships between assays and the steps taken to interpret the data. 
is_a: mged:ExperimentPackage
relationship: mged:has_bioassays mged:BioAssay
relationship: mged:has_description xsd:string
relationship: mged:has_MAGE_description mged:ReplicateDescription
relationship: mged:has_experiment_design_type mged:ExperimentDesignType
relationship: mged:has_MAGE_description mged:NormalizationDescription
relationship: mged:has_MAGE_description mged:QualityControlDescription
relationship: mged:has_experiment_factors mged:ExperimentalFactor
property_value: mged:unique_identifier "MO_170" xsd:string
property_value: mged:class_source "mage" xsd:string
property_value: mged:class_role "concrete" xsd:string

[Term]
id: mged:ExperimentDesignType
comment: The ExperimentDesignType is the high level description for studies such as \"time series\", \"dose response\", etc.  
is_a: mged:ExperimentPackage
property_value: mged:class_source "ontology" xsd:string
property_value: mged:unique_identifier "MO_158" xsd:string
property_value: mged:class_role "abstract" xsd:string

[Term]
id: mged:ExperimentPackage
comment: The descriptions associated with the Experiment package of MAGE
is_a: mged:MGEDCoreOntology
property_value: mged:class_role "abstract" xsd:string
property_value: mged:class_source "mage" xsd:string
property_value: mged:unique_identifier "MO_31" xsd:string

[Term]
id: mged:ExperimentalFactor
comment: The factors in the study that are experimental parameters or regarded as influencing the experimental results.
is_a: mged:ExperimentPackage
relationship: mged:has_category mged:MethodologicalFactorCategory
relationship: mged:has_factor_value mged:FactorValue
relationship: mged:has_category mged:BiologicalFactorCategory
property_value: mged:class_source "mage" xsd:string
property_value: mged:class_role "concrete" xsd:string
property_value: mged:unique_identifier "MO_10" xsd:string

[Term]
id: mged:ExperimentalFactorCategory
comment: A factor category describes factors which are examined in the experiment,  e.g. disease_state, where the factor values are ALL and AML.
is_a: mged:ExperimentPackage
property_value: mged:unique_identifier "MO_205" xsd:string
property_value: mged:class_source "ontology" xsd:string
property_value: mged:class_role "abstract" xsd:string

[Term]
id: mged:ExperimentalProtocolType
comment: All protocols which involve treatment of a biomaterial or an array during the course of a microarray experiment.
is_a: mged:ProtocolType
property_value: mged:class_source "ontology" xsd:string
property_value: mged:class_role "concrete" xsd:string
property_value: mged:unique_identifier "MO_75" xsd:string

[Term]
id: mged:FactorValue
comment: The value of an ExperimentFactor.
is_a: mged:ExperimentPackage
relationship: mged:has_factor_value_ontology_entry mged:ExperimentalFactorCategory
relationship: mged:has_property_set mged:FactorValueSet
relationship: mged:has_property_set mged:FactorValueDependency
relationship: mged:has_measurement mged:Measurement
property_value: mged:class_role "concrete" xsd:string
property_value: mged:class_source "mage" xsd:string
property_value: mged:unique_identifier "MO_203" xsd:string

[Term]
id: mged:FactorValueDependency
comment: A group of FactorValues which refer to the same condition used to treat or describe a BioMaterial, e.g. 10% glucose, 1 hour OR larval stage, age 24 hours. 
is_a: mged:ExperimentPackage
is_a: mged:DeprecatedTerms
relationship: mged:has_value xsd:string
property_value: mged:deprecation_in_version "1.1.9" xsd:string
property_value: mged:unique_identifier "MO_148" xsd:string
property_value: mged:deprecation_old_restriction "some|has_value|string" xsd:string
property_value: mged:deprecation_reason "deleted_term" xsd:string
property_value: mged:class_role "place_holder" xsd:string
property_value: mged:class_source "ontology" xsd:string

[Term]
id: mged:FactorValueSet
comment: A super grouping of FactorValueDependencies or FactorValues which describes combinations of conditions used to treat or describe a BioMaterial applied to a BioAssay, typically separating things on the basis of channels or the concepts of measured and reference samples e.g. 10% glucose, 1 hour AND 10mm NaCl, 2 hours in channel 1. 
is_a: mged:ExperimentPackage
is_a: mged:DeprecatedTerms
relationship: mged:has_value xsd:string
property_value: mged:class_source "ontology" xsd:string
property_value: mged:deprecation_old_restriction "some|has_value|string" xsd:string
property_value: mged:deprecation_reason "deleted_term" xsd:string
property_value: mged:deprecation_in_version "1.1.9" xsd:string
property_value: mged:class_role "place_holder" xsd:string
property_value: mged:unique_identifier "MO_217" xsd:string

[Term]
id: mged:FailType
comment: Controlled terms for descriptors of failures (as in PCR) associated with reporters.
is_a: mged:DesignElementPackage
property_value: mged:class_role "concrete" xsd:string
property_value: mged:unique_identifier "MO_98" xsd:string
property_value: mged:class_source "ontology" xsd:string

[Term]
id: mged:FamilyHistory
comment: Relevant aspects of genetic preconditions or family member's clinical history.
is_a: mged:EnvironmentalHistory
relationship: mged:has_family_member mged:FamilyMember
property_value: mged:class_role "abstract" xsd:string
property_value: mged:unique_identifier "MO_59" xsd:string
property_value: mged:class_source "ontology" xsd:string

[Term]
id: mged:FamilyMember
comment: Member of the biosource's family.
is_a: mged:BioMaterialPackage
relationship: mged:has_individual_genetic_characteristics mged:IndividualGeneticCharacteristics
relationship: mged:has_clinical_record mged:OntologyEntry
relationship: mged:has_disease_state mged:DiseaseState
relationship: mged:has_family_relationship mged:FamilyRelationship
property_value: mged:class_source "ontology" xsd:string
property_value: mged:unique_identifier "MO_188" xsd:string
property_value: mged:class_role "abstract" xsd:string

[Term]
id: mged:FamilyRelationship
comment: A type of relationship applicable to mammals to describe the genetic relatedness of the individual under study.  E.g. brother or mother.
is_a: mged:BioMaterialPackage
property_value: mged:class_role "concrete" xsd:string
property_value: mged:class_source "ontology" xsd:string
property_value: mged:unique_identifier "MO_36" xsd:string

[Term]
id: mged:FeatureDefect
comment: A technical manufacturer described defect for features.
is_a: mged:ArrayPackage
relationship: mged:has_type mged:DefectType
property_value: mged:class_role "concrete" xsd:string
property_value: mged:unique_identifier "MO_138" xsd:string
property_value: mged:class_source "mage" xsd:string

[Term]
id: mged:FeatureGroup
comment: Technology-based grouping of features representing individual locations on the array. 
is_a: mged:DesignElementGroup
relationship: mged:has_feature_shape mged:FeatureShape
relationship: mged:has_type mged:TechnologyType
property_value: mged:unique_identifier "MO_54" xsd:string
property_value: mged:class_source "mage" xsd:string
property_value: mged:class_role "concrete" xsd:string

[Term]
id: mged:FeatureShape
comment: The expected shape of the feature on the array.
is_a: mged:ArrayDesignPackage
property_value: mged:unique_identifier "MO_8" xsd:string
property_value: mged:class_role "concrete" xsd:string
property_value: mged:class_source "ontology" xsd:string

[Term]
id: mged:Fiducial
comment: A marking on the surface of the array that can be used to identify the origin of the array.
is_a: mged:ArrayPackage
relationship: mged:has_type mged:FiducialType
property_value: mged:class_role "concrete" xsd:string
property_value: mged:unique_identifier "MO_136" xsd:string
property_value: mged:class_source "mage" xsd:string

[Term]
id: mged:FiducialType
comment: A descriptor that indicates the type of the fiducial such as chrome border of an Affymetrix array or a laser ablation mark.
is_a: mged:ArrayPackage
property_value: mged:unique_identifier "MO_17" xsd:string
property_value: mged:class_source "ontology" xsd:string
property_value: mged:class_role "concrete" xsd:string

[Term]
id: mged:Generation
comment: The number of cell passages if the organism or organism part that is cultured is unicellular or a cell culture otherwise the number of generations.
is_a: mged:EnvironmentalHistory
property_value: mged:class_role "place_holder" xsd:string
property_value: mged:unique_identifier "MO_43" xsd:string
property_value: mged:class_source "ontology" xsd:string

[Term]
id: mged:GeneticMaterial
comment: Genetic material may be DNA or RNA and identifiable as an entry in a public external database such as EMBL/DDBJ/GenBank or one of the model organism databases.
is_a: mged:MGEDExtendedOntology
property_value: mged:unique_identifier "MO_137" xsd:string

[Term]
id: mged:GeneticModification
comment: The genetic modification introduced into the organism from which the biomaterial was derived. Examples of genetic modification include specification of a transgene or the gene knocked-out or details of transient transfection.
is_a: mged:BioMaterialCharacteristics
property_value: mged:unique_identifier "MO_122" xsd:string
property_value: mged:class_role "concrete" xsd:string
property_value: mged:class_source "ontology" xsd:string

[Term]
id: mged:Genotype
comment: The total sum of the genetic information of an organism that is known and relevant to the experiment being performed, including chromosomal, plasmid, viral or other genetic material which has been introduced into the organism\neither prior to or during the experiment.
is_a: mged:IndividualGeneticCharacteristics
property_value: mged:unique_identifier "MO_51" xsd:string
property_value: mged:class_source "ontology" xsd:string
property_value: mged:class_role "concrete" xsd:string

[Term]
id: mged:GeographicLocation
comment: A descriptor of the location from which a BioMaterial was obtained, e.g. country, region, grid reference.
is_a: mged:OntologyEntry
is_a: mged:EnvironmentalHistory
relationship: mged:has_database mged:GeographicLocationDatabase
property_value: mged:unique_identifier "MO_132" xsd:string
property_value: mged:class_role "abstract" xsd:string
property_value: mged:class_source "ontology" xsd:string

[Term]
id: mged:GeographicLocationDatabase
comment: Database of geographic locations.
is_a: mged:Database
property_value: mged:unique_identifier "MO_35" xsd:string
property_value: mged:class_source "ontology" xsd:string
property_value: mged:class_role "concrete" xsd:string

[Term]
id: mged:GrowthCondition
comment: A description of the conditions used to grow organisms or parts of the organism. This includes isolated environments such as cultures and open environments such as field studies.
is_a: mged:EnvironmentalHistory
relationship: mged:has_value xsd:string
relationship: mged:has_maximum_measurement mged:Measurement
relationship: mged:has_measurement mged:Measurement
property_value: mged:unique_identifier "MO_183" xsd:string
property_value: mged:class_source "ontology" xsd:string
property_value: mged:class_role "abstract" xsd:string

[Term]
id: mged:Haplotype
comment: The genotype of a single chromosome (i.e., the haploid genotype) that is known and relevant to the experiment being performed. 
is_a: mged:IndividualGeneticCharacteristics
property_value: mged:unique_identifier "MO_146" xsd:string
property_value: mged:class_role "place_holder" xsd:string
property_value: mged:class_source "ontology" xsd:string

[Term]
id: mged:Hardware
comment: The machine or instrument used.
is_a: mged:ProtocolPackage
relationship: mged:has_model xsd:string
relationship: mged:has_type mged:HardwareType
relationship: mged:has_manufacturer mged:Contact
relationship: mged:has_software mged:Software
relationship: mged:has_make xsd:string
property_value: mged:class_source "mage" xsd:string
property_value: mged:unique_identifier "MO_134" xsd:string
property_value: mged:class_role "concrete" xsd:string

[Term]
id: mged:HardwareType
comment: Controlled terms for descriptors of types of hardware.
is_a: mged:ProtocolPackage
property_value: mged:class_source "ontology" xsd:string
property_value: mged:class_role "concrete" xsd:string
property_value: mged:unique_identifier "MO_113" xsd:string

[Term]
id: mged:HardwareVariation
comment: The effects of different hardware, types of hardware, or models of hardware on experimental results are studied.
is_a: mged:MethodologicalFactorCategory
property_value: mged:class_source "ontology" xsd:string
property_value: mged:unique_identifier "MO_81" xsd:string
property_value: mged:class_role "place_holder" xsd:string

[Term]
id: mged:HigherLevelAnalysisPackage
comment: MAGE package for HigherLevelAnalysis
is_a: mged:MGEDCoreOntology
property_value: mged:class_role "abstract" xsd:string
property_value: mged:unique_identifier "MO_228" xsd:string
property_value: mged:class_source "mage" xsd:string

[Term]
id: mged:HigherLevelAnalysisProtocolType
comment: A protocol which yields a dataset(s) from which biological conclusions can be derived. E.g. clustering (not normalization or averaging).
is_a: mged:ProtocolType
property_value: mged:class_source "ontology" xsd:string
property_value: mged:unique_identifier "MO_47" xsd:string
property_value: mged:class_role "concrete" xsd:string

[Term]
id: mged:Histology
comment: Microscopic morphology of tissues.
is_a: mged:OntologyEntry
is_a: mged:BioMaterialCharacteristics
relationship: mged:has_organism_part mged:OrganismPart
relationship: mged:has_database mged:HistologyDatabase
relationship: mged:has_performer mged:Contact
property_value: mged:class_source "ontology" xsd:string
property_value: mged:class_role "abstract" xsd:string
property_value: mged:unique_identifier "MO_194" xsd:string

[Term]
id: mged:HistologyDatabase
comment: Database of histology information.
is_a: mged:Database
property_value: mged:class_role "concrete" xsd:string
property_value: mged:unique_identifier "MO_175" xsd:string
property_value: mged:class_source "ontology" xsd:string

[Term]
id: mged:HistoryFactor
comment: Factors that are measured or observed parts of the study but not induced or under the control of the experiment. These factors do not have protocols (e.g., epidemiology factors).
is_a: mged:MGEDExtendedOntology
property_value: mged:unique_identifier "MO_82" xsd:string

[Term]
id: mged:Host
comment: Organisms or organism parts used as a designed part of the culture (e.g., red blood cells, stromal cells). 
is_a: mged:EnvironmentalHistory
relationship: mged:has_host_part mged:OrganismPart
relationship: mged:has_host mged:Organism
property_value: mged:unique_identifier "MO_101" xsd:string
property_value: mged:class_source "ontology" xsd:string
property_value: mged:class_role "abstract" xsd:string

[Term]
id: mged:Humidity
comment: The humidity that the biosource is exposed to.
is_a: mged:GrowthCondition
property_value: mged:class_source "ontology" xsd:string
property_value: mged:class_role "abstract" xsd:string
property_value: mged:unique_identifier "MO_29" xsd:string

[Term]
id: mged:Image
is_a: mged:DescriptionPackage
relationship: mged:has_image_format mged:ImageFormat
relationship: mged:has_URI mged:URI
relationship: mged:has_database mged:Database
property_value: mged:unique_identifier "MO_22" xsd:string
property_value: mged:class_role "concrete" xsd:string
property_value: mged:class_source "mage" xsd:string

[Term]
id: mged:ImageFormat
comment: Controlled terms for descriptors of the image file format (TIFF, JPEG, GIF, etc.)
is_a: mged:BioAssayPackage
property_value: mged:class_role "concrete" xsd:string
property_value: mged:unique_identifier "MO_211" xsd:string
property_value: mged:class_source "ontology" xsd:string

[Term]
id: mged:Individual
comment: Identifier or name of the individual organism from which the biomaterial was derived. 
is_a: mged:BioMaterialCharacteristics
property_value: mged:unique_identifier "MO_169" xsd:string
property_value: mged:class_source "ontology" xsd:string
property_value: mged:class_role "place_holder" xsd:string

[Term]
id: mged:IndividualChromosomalAbnormality
comment: An abnormality in the number or structure of chromosomes in the biomaterial from an individual organism, detected by karyotyping or other methods. E.g., a B-cell lymphoma from a patient has an abnormal karyotype 48,XY,t(1;2)(p22;p11),+3,+12.
is_a: mged:DeprecatedTerms
is_a: mged:IndividualGeneticCharacteristics
property_value: mged:unique_identifier "MO_185" xsd:string
property_value: mged:class_role "place_holder" xsd:string
property_value: mged:deprecation_in_version "1.2.0" xsd:string
property_value: mged:deprecation_reason "deleted_term" xsd:string
property_value: mged:class_source "ontology" xsd:string

[Term]
id: mged:IndividualGeneticCharacteristics
comment: The genotype of the individual organism from which the biomaterial was derived. Individual genetic characteristics include polymorphisms, disease alleles, and haplotypes.
is_a: mged:BioMaterialCharacteristics
relationship: mged:has_value xsd:string
property_value: mged:class_source "ontology" xsd:string
property_value: mged:unique_identifier "MO_66" xsd:string
property_value: mged:class_role "abstract" xsd:string

[Term]
id: mged:InitialTimePoint
comment: The point from which measurements of age were taken.
is_a: mged:BioMaterialPackage
property_value: mged:unique_identifier "MO_80" xsd:string
property_value: mged:class_source "ontology" xsd:string
property_value: mged:class_role "concrete" xsd:string

[Term]
id: mged:LabelCompound
comment: Compounds that are used for labeling extracts.
is_a: mged:Compound
property_value: mged:class_source "ontology" xsd:string
property_value: mged:unique_identifier "MO_13" xsd:string
property_value: mged:class_role "concrete" xsd:string

[Term]
id: mged:LabeledExtract
comment: The BioSample after labeling for detection of the nucleic acids. 
is_a: mged:BioMaterial
relationship: mged:has_been_treated mged:Treatment
relationship: mged:has_compound mged:LabelCompound
property_value: mged:class_source "mage" xsd:string
property_value: mged:class_role "concrete" xsd:string
property_value: mged:unique_identifier "MO_221" xsd:string

[Term]
id: mged:Light
comment: The photoperiod and type (e.g., natural, restricted wavelength) of light exposure. 
is_a: mged:GrowthCondition
property_value: mged:unique_identifier "MO_60" xsd:string
property_value: mged:class_source "ontology" xsd:string
property_value: mged:class_role "abstract" xsd:string

[Term]
id: mged:LightUnit
comment: Units for measuring the intensity of light.
is_a: mged:OtherUnit
property_value: mged:class_source "ontology" xsd:string
property_value: mged:unique_identifier "MO_119" xsd:string
property_value: mged:class_role "concrete" xsd:string

[Term]
id: mged:MGEDCoreOntology
comment: An ontology developed by the Microarray Gene Expression Data (MGED) Society to provide descriptors required for MAGE v.1 documents. 
is_a: mged:MGEDOntology
relationship: mged:has_ID xsd:string
property_value: mged:unique_identifier "MO_57" xsd:string
property_value: mged:class_source "ontology" xsd:string
property_value: mged:class_role "abstract" xsd:string

[Term]
id: mged:MGEDExtendedOntology
comment: Location for those classes that are not in the Core ontology as they do are not containable in MAGE. It is not yet structured to work with the Core ontology 
is_a: mged:MGEDOntology
property_value: mged:unique_identifier "MO_196" xsd:string

[Term]
id: mged:MGEDOntology
comment: The MGED Ontology is a top level container for the MGEDCoreOntology and the MGEDExtendedOntology. The MGED ontology describes microarray experiments and is split into the MGEDCoreOntology, which supports MAGE-OM v1.0 and is organized consistently with MAGE, and the MGEDExtendedOntology, which expands MAGE v1.0 and contains concepts and relationships which are not included in MAGE. 
relationship: mged:is_user_defined mged:Contact
relationship: mged:is_user_defined mged:BibliographicReference
property_value: mged:unique_identifier "MO_174" xsd:string
property_value: mged:class_role "abstract" xsd:string
property_value: mged:class_source "ontology" xsd:string

[Term]
id: mged:MGEDOntologyVersion
comment: The version of the MGED Ontology.
is_a: mged:MGEDCoreOntology
property_value: mged:class_role "concrete" xsd:string
property_value: mged:class_source "ontology" xsd:string
property_value: mged:unique_identifier "MO_115" xsd:string

[Term]
id: mged:MassUnit
comment: Units used for mass measurements.
is_a: mged:Unit
property_value: mged:class_role "concrete" xsd:string
property_value: mged:unique_identifier "MO_149" xsd:string
property_value: mged:class_source "ontology" xsd:string

[Term]
id: mged:MassUnitOther
comment: Mass units not specified in MAGE.
is_a: mged:MassUnit
property_value: mged:unique_identifier "MO_11" xsd:string
property_value: mged:class_role "place_holder" xsd:string
property_value: mged:class_source "ontology" xsd:string

[Term]
id: mged:MaterialType
comment: Controlled terms for the state of the BioMaterial. Each state (BioSource, different BioSamples, and LabeledExtract) have MaterialTypes. Examples are population of an organism, organism, organism part, cell, etc.  
is_a: mged:BioMaterialPackage
property_value: mged:class_source "ontology" xsd:string
property_value: mged:class_role "concrete" xsd:string
property_value: mged:unique_identifier "MO_32" xsd:string

[Term]
id: mged:Measurement
comment: Measured values and units.
is_a: mged:MeasurementPackage
relationship: mged:has_value xsd:string
relationship: mged:has_units mged:Unit
relationship: mged:has_measurement_type mged:MeasurementType
property_value: mged:unique_identifier "MO_144" xsd:string
property_value: mged:class_role "concrete" xsd:string
property_value: mged:class_source "mage" xsd:string

[Term]
id: mged:MeasurementPackage
comment: MAGE package for measurement. 
is_a: mged:MGEDCoreOntology
property_value: mged:unique_identifier "MO_89" xsd:string
property_value: mged:class_role "abstract" xsd:string
property_value: mged:class_source "mage" xsd:string

[Term]
id: mged:MeasurementType
comment: class to hold instances used as the filler for the property has_measurement_type
is_a: mged:MGEDCoreOntology
property_value: mged:unique_identifier "MO_72" xsd:string
property_value: mged:class_source "ontology" xsd:string
property_value: mged:class_role "concrete" xsd:string

[Term]
id: mged:Media
comment: The physical state or matrix used to provide nutrients to the organism (e.g., liquid, agar, soil) .
is_a: mged:GrowthCondition
property_value: mged:unique_identifier "MO_19" xsd:string
property_value: mged:class_source "ontology" xsd:string
property_value: mged:class_role "concrete" xsd:string

[Term]
id: mged:MethodologicalDesign
comment: A methodological experiment design type investigates differences caused by application of protocols, hardware, software and bioassay relationships, e.g. quality control, replicates, loop.
is_a: mged:ExperimentDesignType
property_value: mged:class_source "ontology" xsd:string
property_value: mged:unique_identifier "MO_2" xsd:string
property_value: mged:class_role "concrete" xsd:string

[Term]
id: mged:MethodologicalFactorCategory
comment: The effects on results of changing protocols, hardware, software, or people performing the experiments are studied Examples are comparison of data across different labeling protocols, scanners, image quantification software, or laboratories. 
is_a: mged:ExperimentalFactorCategory
property_value: mged:class_role "abstract" xsd:string
property_value: mged:unique_identifier "MO_85" xsd:string
property_value: mged:class_source "ontology" xsd:string

[Term]
id: mged:Node
comment: A node is an individual component of BioAssayDataCluster that groups design elements, quantitation types, and BioAssays together. A node may contain other nodes.
is_a: mged:HigherLevelAnalysisPackage
relationship: mged:has_node_value mged:NodeValue
property_value: mged:class_role "concrete" xsd:string
property_value: mged:unique_identifier "MO_73" xsd:string
property_value: mged:class_source "mage" xsd:string

[Term]
id: mged:NodeValue
comment: Node values allow the organization of the nodes in relation to other nodes produced by mathematical functions such as a clustering algorithm.
is_a: mged:HigherLevelAnalysisPackage
relationship: mged:has_node_value_type mged:NodeValueType
relationship: mged:has_type mged:DataType
relationship: mged:has_scale mged:Scale
property_value: mged:unique_identifier "MO_104" xsd:string
property_value: mged:class_role "concrete" xsd:string
property_value: mged:class_source "mage" xsd:string

[Term]
id: mged:NodeValueType
comment: Controlled set of terms for describing the type of values (e.g., Euclidean distance).
is_a: mged:HigherLevelAnalysisPackage
property_value: mged:class_role "concrete" xsd:string
property_value: mged:class_source "ontology" xsd:string
property_value: mged:unique_identifier "MO_160" xsd:string

[Term]
id: mged:NormalizationDescription
comment: NormalizationDescription provides details of the normalization strategy for the experiment.
is_a: mged:ExperimentPackage
relationship: mged:has_type mged:NormalizationDescriptionType
property_value: mged:unique_identifier "MO_131" xsd:string
property_value: mged:class_role "abstract" xsd:string
property_value: mged:class_source "ontology" xsd:string

[Term]
id: mged:NormalizationDescriptionType
comment: Controlled descriptors for the normalization strategy used for the experiment.
is_a: mged:ExperimentPackage
property_value: mged:class_role "concrete" xsd:string
property_value: mged:class_source "ontology" xsd:string
property_value: mged:unique_identifier "MO_27" xsd:string

[Term]
id: mged:Nutrients
comment: The food provided to the organism (e.g., chow, fertilizer, DEMM 10%FBS, etc.).
is_a: mged:GrowthCondition
relationship: mged:has_nutrient_component mged:Compound
property_value: mged:class_role "abstract" xsd:string
property_value: mged:class_source "ontology" xsd:string
property_value: mged:unique_identifier "MO_127" xsd:string

[Term]
id: mged:Observation
comment: Observation will record the macroscopic examination of the biomaterial.
is_a: mged:BioMaterialCharacteristics
relationship: mged:has_performer mged:Contact
relationship: mged:has_database mged:ObservationDatabase
property_value: mged:unique_identifier "MO_53" xsd:string
property_value: mged:class_role "abstract" xsd:string
property_value: mged:class_source "ontology" xsd:string

[Term]
id: mged:ObservationDatabase
comment: Database of terms for observations such as 'abnormal coat', 'skin pigment abnormality' describing macroscopic examinations.
is_a: mged:Database
property_value: mged:unique_identifier "MO_91" xsd:string
property_value: mged:class_source "ontology" xsd:string
property_value: mged:class_role "concrete" xsd:string

[Term]
id: mged:OntologyEntry
comment: External (to the MGED ontology) controlled vocabulary or ontology that can be referred such as ICD-9 or Gene Ontology.
is_a: mged:DescriptionPackage
relationship: mged:has_description xsd:string
relationship: mged:has_accession xsd:string
relationship: mged:has_value xsd:string
relationship: mged:has_accession_version xsd:string
relationship: mged:has_database_entry_type mged:DatabaseEntryType
relationship: mged:has_database mged:Database
property_value: mged:unique_identifier "MO_87" xsd:string
property_value: mged:class_source "ontology" xsd:string
property_value: mged:class_role "abstract" xsd:string

[Term]
id: mged:OperatorVariation
comment: The effects of different investigators, laboratories, or organizations on experimental results are studied.
is_a: mged:MethodologicalFactorCategory
property_value: mged:unique_identifier "MO_38" xsd:string
property_value: mged:class_role "place_holder" xsd:string
property_value: mged:class_source "ontology" xsd:string

[Term]
id: mged:Organism
comment: The genus and species (and subspecies) of the organism from which the biomaterial is derived from. 
is_a: mged:OntologyEntry
is_a: mged:BioMaterialCharacteristics
relationship: mged:has_database mged:OrganismDatabase
property_value: mged:unique_identifier "MO_229" xsd:string
property_value: mged:class_source "ontology" xsd:string
property_value: mged:class_role "abstract" xsd:string

[Term]
id: mged:OrganismDatabase
comment: Database of taxonomic information.
is_a: mged:Database
property_value: mged:class_role "concrete" xsd:string
property_value: mged:class_source "ontology" xsd:string
property_value: mged:unique_identifier "MO_64" xsd:string

[Term]
id: mged:OrganismPart
comment: The part of organism's anatomy or substance arising from an organism from which the biomaterial was derived, excludes cells. E.g. tissue, organ, system, sperm, blood or body location (arm).
is_a: mged:OntologyEntry
is_a: mged:BioMaterialCharacteristics
relationship: mged:has_database mged:OrganismPartDatabase
property_value: mged:class_source "ontology" xsd:string
property_value: mged:unique_identifier "MO_1" xsd:string
property_value: mged:class_role "abstract" xsd:string

[Term]
id: mged:OrganismPartDatabase
comment: Database of organism part information.
is_a: mged:Database
property_value: mged:class_source "ontology" xsd:string
property_value: mged:unique_identifier "MO_200" xsd:string
property_value: mged:class_role "concrete" xsd:string

[Term]
id: mged:OrganismStatus
comment: The stage premortem or postmortem at which the sample was processed for extraction of biomaterials. 
is_a: mged:BioMaterialCharacteristics
property_value: mged:class_role "concrete" xsd:string
property_value: mged:unique_identifier "MO_84" xsd:string
property_value: mged:class_source "ontology" xsd:string

[Term]
id: mged:Organization
comment: The organization (e.g. company, hospital) to contact to obtain or purchase something.
is_a: mged:Contact
relationship: mged:has_parent_organization mged:Organization
relationship: mged:has_name xsd:string
property_value: mged:class_role "concrete" xsd:string
property_value: mged:unique_identifier "MO_177" xsd:string
property_value: mged:class_source "mage" xsd:string

[Term]
id: mged:OtherUnit
comment: Other units are those types not specified in MAGE such as lumens, radioactivity, etc.
is_a: mged:Unit
property_value: mged:class_role "concrete" xsd:string
property_value: mged:unique_identifier "MO_199" xsd:string
property_value: mged:class_source "ontology" xsd:string

[Term]
id: mged:Parameter
comment: A parameter is a variable within a protocol. 
is_a: mged:ProtocolPackage
relationship: mged:has_type mged:DataType
relationship: mged:has_units mged:Unit
property_value: mged:class_role "concrete" xsd:string
property_value: mged:class_source "mage" xsd:string
property_value: mged:unique_identifier "MO_110" xsd:string

[Term]
id: mged:PathogenTest
comment: Tests and results for pathogens infecting organism from which the biosource is derived
is_a: mged:EnvironmentalHistory
relationship: mged:was_tested_for mged:Organism
relationship: mged:has_result mged:Result
property_value: mged:unique_identifier "MO_184" xsd:string
property_value: mged:class_role "abstract" xsd:string
property_value: mged:class_source "ontology" xsd:string

[Term]
id: mged:Person
comment: The individual to contact regarding something provided such as a biomaterial.
is_a: mged:Contact
relationship: mged:has_last_name xsd:string
relationship: mged:has_mid_initials xsd:string
relationship: mged:has_affiliation mged:Organization
relationship: mged:has_first_name xsd:string
property_value: mged:unique_identifier "MO_24" xsd:string
property_value: mged:class_role "concrete" xsd:string
property_value: mged:class_source "mage" xsd:string

[Term]
id: mged:PerturbationalDesign
comment: A perturbational design type is where the organism(s) are treated or manipulated or modified, for example a genetic modification, somatic modification 
is_a: mged:ExperimentDesignType
property_value: mged:class_role "concrete" xsd:string
property_value: mged:class_source "ontology" xsd:string
property_value: mged:unique_identifier "MO_106" xsd:string

[Term]
id: mged:Phenotype
comment: The observable form taken by some character (or group of characters) in an individual or an organism, excluding pathology and disease.  The detectable outward manifestations of a specific genotype.
is_a: mged:BioMaterialCharacteristics
is_a: mged:OntologyEntry
relationship: mged:has_database mged:PhenotypeDatabase
property_value: mged:unique_identifier "MO_192" xsd:string
property_value: mged:class_role "abstract" xsd:string
property_value: mged:class_source "ontology" xsd:string

[Term]
id: mged:PhenotypeDatabase
comment: Database of phenotype information
is_a: mged:Database
property_value: mged:class_role "concrete" xsd:string
property_value: mged:unique_identifier "MO_39" xsd:string
property_value: mged:class_source "ontology" xsd:string

[Term]
id: mged:PhysicalArrayDesign
comment: Descriptions pertaining to the array.
is_a: mged:ArrayDesignPackage
relationship: mged:has_type mged:SurfaceType
property_value: mged:class_role "concrete" xsd:string
property_value: mged:class_source "mage" xsd:string
property_value: mged:unique_identifier "MO_212" xsd:string

[Term]
id: mged:PhysicalBioAssay
comment: A physical bioassay is the combination of arrays and biomaterials as in a hybridization.
is_a: mged:BioAssay
relationship: mged:has_image_format mged:ImageFormat
property_value: mged:class_role "concrete" xsd:string
property_value: mged:unique_identifier "MO_99" xsd:string
property_value: mged:class_source "mage" xsd:string

[Term]
id: mged:PhysicalBioSequenceType
comment: A physical biosequence type represents biological sequence that can be physically placed (spotted or synthesized) on an array e.g. BAC, PAC.
is_a: mged:BioSequenceType
property_value: mged:class_role "concrete" xsd:string
property_value: mged:class_source "ontology" xsd:string
property_value: mged:unique_identifier "MO_92" xsd:string

[Term]
id: mged:Ploidy
comment: The number of single sets of chromosomes in the cell or an organism e.g., haploid, diploid, triploid, etc.
is_a: mged:IndividualGeneticCharacteristics
property_value: mged:unique_identifier "MO_220" xsd:string
property_value: mged:class_source "ontology" xsd:string
property_value: mged:class_role "concrete" xsd:string

[Term]
id: mged:PolymerType
comment: Controlled terms for descriptors of the type of polymer (RNA, DNA, protein) of the biosequence.
is_a: mged:BioSequencePackage
property_value: mged:unique_identifier "MO_102" xsd:string
property_value: mged:class_role "concrete" xsd:string
property_value: mged:class_source "ontology" xsd:string

[Term]
id: mged:PopulationDensity
comment: The concentration range of the organism.
is_a: mged:GrowthCondition
property_value: mged:class_source "ontology" xsd:string
property_value: mged:class_role "abstract" xsd:string
property_value: mged:unique_identifier "MO_46" xsd:string

[Term]
id: mged:Preservation
comment: Method and type of preserving the organism or biosource (i.e. keeping it in stasis).
is_a: mged:MGEDExtendedOntology
relationship: mged:has_type mged:PreservationType
relationship: mged:has_protocol mged:Protocol
property_value: mged:unique_identifier "MO_176" xsd:string

[Term]
id: mged:PreservationType
comment: The type of method used to preserve (keep in stasis) the organism or biosource.  
is_a: mged:MGEDExtendedOntology
property_value: mged:unique_identifier "MO_195" xsd:string

[Term]
id: mged:Protocol
comment: Documentation of the set of steps taken in a procedure.
is_a: mged:ProtocolPackage
relationship: mged:has_URI mged:URI
relationship: mged:has_software mged:Software
relationship: mged:has_type mged:ProtocolType
relationship: mged:has_citation mged:BibliographicReference
relationship: mged:has_text xsd:string
relationship: mged:has_hardware mged:Hardware
relationship: mged:has_title xsd:string
relationship: mged:has_description xsd:string
property_value: mged:class_source "mage" xsd:string
property_value: mged:class_role "concrete" xsd:string
property_value: mged:unique_identifier "MO_214" xsd:string

[Term]
id: mged:ProtocolPackage
comment: The MAGE package for protocols.
is_a: mged:MGEDCoreOntology
property_value: mged:class_source "mage" xsd:string
property_value: mged:class_role "abstract" xsd:string
property_value: mged:unique_identifier "MO_63" xsd:string

[Term]
id: mged:ProtocolParameterType
comment: Descriptors for protocol parameter types, e.g. compound concentration, media type. 
is_a: mged:MGEDExtendedOntology
property_value: mged:unique_identifier "MO_164" xsd:string

[Term]
id: mged:ProtocolType
comment: A controlled set of terms to provide a descriptor for the type of protocol.
is_a: mged:MethodologicalFactorCategory
is_a: mged:ProtocolPackage
property_value: mged:class_role "abstract" xsd:string
property_value: mged:class_source "ontology" xsd:string
property_value: mged:unique_identifier "MO_150" xsd:string

[Term]
id: mged:ProtocolVariation
comment: The effects of different protocols or changes in protocols on experimental results are studied.
is_a: mged:MGEDExtendedOntology
property_value: mged:unique_identifier "MO_140" xsd:string

[Term]
id: mged:PublicationType
comment: Controlled terms for descriptors of the type of publication such as those used by Medline (review, book, etc.).
is_a: mged:DescriptionPackage
property_value: mged:class_role "concrete" xsd:string
property_value: mged:class_source "ontology" xsd:string
property_value: mged:unique_identifier "MO_208" xsd:string

[Term]
id: mged:QualityControlDescription
comment: QualityControlDescription provides details of the quality control aspects of the experiment.
is_a: mged:ExperimentPackage
relationship: mged:has_type mged:QualityControlDescriptionType
property_value: mged:class_source "ontology" xsd:string
property_value: mged:unique_identifier "MO_88" xsd:string
property_value: mged:class_role "abstract" xsd:string

[Term]
id: mged:QualityControlDescriptionType
comment: Controlled descriptors for the quality control strategy for an experiment. 
is_a: mged:ExperimentPackage
property_value: mged:unique_identifier "MO_121" xsd:string
property_value: mged:class_role "concrete" xsd:string
property_value: mged:class_source "ontology" xsd:string

[Term]
id: mged:QuantitationType
comment: The QuantitationType provides a method for calculating a single datum of the BioAssayData matrix.
is_a: mged:QuantitationTypePackage
relationship: mged:has_scale mged:Scale
relationship: mged:has_type mged:DataType
property_value: mged:class_source "mage" xsd:string
property_value: mged:class_role "abstract" xsd:string
property_value: mged:unique_identifier "MO_67" xsd:string

[Term]
id: mged:QuantitationTypePackage
comment: The MAGE package for defining classes for quantitation.
is_a: mged:MGEDCoreOntology
property_value: mged:class_source "mage" xsd:string
property_value: mged:class_role "abstract" xsd:string
property_value: mged:unique_identifier "MO_130" xsd:string

[Term]
id: mged:QuantityUnit
comment: Units used for quantity measurements.
is_a: mged:Unit
property_value: mged:unique_identifier "MO_210" xsd:string
property_value: mged:class_role "concrete" xsd:string
property_value: mged:class_source "ontology" xsd:string

[Term]
id: mged:QuantityUnitOther
comment: Quantity units not specified in MAGE.
is_a: mged:QuantityUnit
property_value: mged:class_role "concrete" xsd:string
property_value: mged:class_source "ontology" xsd:string
property_value: mged:unique_identifier "MO_156" xsd:string

[Term]
id: mged:RadiationUnit
comment: Units for measuring decay of a radioactive isotope over time.
is_a: mged:OtherUnit
property_value: mged:unique_identifier "MO_204" xsd:string
property_value: mged:class_source "ontology" xsd:string
property_value: mged:class_role "concrete" xsd:string

[Term]
id: mged:ReplicateDescription
comment: ReplicateDescription provides details about the type of replication used in the experiment.
is_a: mged:ExperimentPackage
relationship: mged:has_type mged:ReplicateDescriptionType
property_value: mged:class_source "ontology" xsd:string
property_value: mged:unique_identifier "MO_162" xsd:string
property_value: mged:class_role "abstract" xsd:string

[Term]
id: mged:ReplicateDescriptionType
comment: Controlled descriptors for the type of replication.
is_a: mged:ExperimentPackage
property_value: mged:unique_identifier "MO_52" xsd:string
property_value: mged:class_source "ontology" xsd:string
property_value: mged:class_role "concrete" xsd:string

[Term]
id: mged:Reporter
comment: Description of the material placed on a feature (spot).
is_a: mged:DesignElement
relationship: mged:has_type mged:FailType
relationship: mged:has_type mged:WarningType
property_value: mged:class_role "concrete" xsd:string
property_value: mged:class_source "mage" xsd:string
property_value: mged:unique_identifier "MO_74" xsd:string

[Term]
id: mged:Result
comment: class to hold instances used as the filler for the property has_result
is_a: mged:MGEDCoreOntology
property_value: mged:unique_identifier "MO_65" xsd:string
property_value: mged:class_source "ontology" xsd:string
property_value: mged:class_role "concrete" xsd:string

[Term]
id: mged:Roles
comment: Controlled terms for descriptors of the role of contact, e.g. submitter, biosource_provider.
is_a: mged:AuditAndSecurityPackage
property_value: mged:class_role "concrete" xsd:string
property_value: mged:class_source "ontology" xsd:string
property_value: mged:unique_identifier "MO_180" xsd:string

[Term]
id: mged:SamplingTimePoint
comment: A descriptor of the time point that a sample was taken. Not to be used \n    where the sample is part of a time course. SamplingTimePoint is not \n    related to age. An instance could be summer, a date, a time, or a range \n    value.
is_a: mged:EnvironmentalHistory
property_value: mged:class_source "ontology" xsd:string
property_value: mged:unique_identifier "MO_139" xsd:string
property_value: mged:class_role "abstract" xsd:string

[Term]
id: mged:Scale
comment: The scale (linear, log10, ln, etc) used to represent the value.
is_a: mged:MGEDCoreOntology
property_value: mged:unique_identifier "MO_108" xsd:string
property_value: mged:class_source "ontology" xsd:string
property_value: mged:class_role "concrete" xsd:string

[Term]
id: mged:SeqFeatureBasis
comment: Controlled terms for how the sequence features were determined (e.g., experimental, computational, etc.)
is_a: mged:BioSequencePackage
property_value: mged:class_role "concrete" xsd:string
property_value: mged:unique_identifier "MO_207" xsd:string
property_value: mged:class_source "ontology" xsd:string

[Term]
id: mged:SequenceOntologyBioSequenceType
comment: Descriptors of biosequence based on the Sequence Ontology (SO) project.
is_a: mged:TheoreticalBioSequenceType
is_a: mged:PhysicalBioSequenceType
is_a: mged:OntologyEntry
relationship: mged:has_database mged:SequenceOntologyDatabase
property_value: mged:class_source "ontology" xsd:string
property_value: mged:class_role "abstract" xsd:string
property_value: mged:unique_identifier "MO_25" xsd:string

[Term]
id: mged:SequenceOntologyDatabase
comment: Database for sequence annotation information.
is_a: mged:Database
property_value: mged:class_source "ontology" xsd:string
property_value: mged:unique_identifier "MO_83" xsd:string
property_value: mged:class_role "concrete" xsd:string

[Term]
id: mged:Serotype
comment: An antigenic property of a cell (e.g. bacteria, RBC) or virus identified by serological methods
is_a: mged:BioMaterialCharacteristics
property_value: mged:class_source "ontology" xsd:string
property_value: mged:unique_identifier "MO_159" xsd:string
property_value: mged:class_role "place_holder" xsd:string

[Term]
id: mged:Sex
comment: Term applied to any organism able to undergo sexual reproduction in order to differentiate the individuals or types involved. Sexual reproduction is defined as the ability to exchange genetic material with the potential of recombinant progeny.
is_a: mged:BioMaterialCharacteristics
property_value: mged:unique_identifier "MO_168" xsd:string
property_value: mged:class_source "ontology" xsd:string
property_value: mged:class_role "concrete" xsd:string

[Term]
id: mged:Software
comment: The software application used.
is_a: mged:ProtocolPackage
relationship: mged:has_software mged:Software
relationship: mged:has_hardware mged:Hardware
relationship: mged:has_manufacturer mged:Contact
relationship: mged:has_type mged:SoftwareType
property_value: mged:class_role "concrete" xsd:string
property_value: mged:class_source "mage" xsd:string
property_value: mged:unique_identifier "MO_109" xsd:string

[Term]
id: mged:SoftwareType
comment: Controlled terms that provide descriptors for the type of software.
is_a: mged:ProtocolPackage
property_value: mged:class_source "ontology" xsd:string
property_value: mged:unique_identifier "MO_202" xsd:string
property_value: mged:class_role "concrete" xsd:string

[Term]
id: mged:SoftwareVariation
comment: The effects of different software, software packages, or software versions on experimental results are studied.
is_a: mged:MethodologicalFactorCategory
property_value: mged:class_role "place_holder" xsd:string
property_value: mged:unique_identifier "MO_222" xsd:string
property_value: mged:class_source "ontology" xsd:string

[Term]
id: mged:SomaticModification
comment: The organism has had non-genetic parts removed, added, or rearranged.
is_a: mged:MGEDExtendedOntology
relationship: mged:has_part_modified mged:OrganismPart
property_value: mged:unique_identifier "MO_44" xsd:string

[Term]
id: mged:StrainOrLine
comment: A strain or line is an animal or plant offspring that has a single ancestral breeding pair or parent as a result of brother x sister or parent x offspring matings. This class is extended to include F1 offspring and established breeding lines. For microbes, these are isolates derived from nature or in the laboratory.
is_a: mged:BioMaterialCharacteristics
is_a: mged:OntologyEntry
relationship: mged:has_species mged:Organism
relationship: mged:has_database mged:StrainOrLineDatabase
property_value: mged:class_role "abstract" xsd:string
property_value: mged:unique_identifier "MO_9" xsd:string
property_value: mged:class_source "ontology" xsd:string

[Term]
id: mged:StrainOrLineDatabase
comment: Database of strain, line, cultivar or ecotype information.
is_a: mged:Database
property_value: mged:class_role "concrete" xsd:string
property_value: mged:class_source "ontology" xsd:string
property_value: mged:unique_identifier "MO_30" xsd:string

[Term]
id: mged:StrandType
comment: A descriptor of the strand type the sequence feature belongs to. e.g. forward, reverse
is_a: mged:MGEDExtendedOntology
property_value: mged:unique_identifier "MO_7" xsd:string

[Term]
id: mged:SubstrateType
comment: Controlled terms for descriptors of types of array substrates.
is_a: mged:ArrayPackage
property_value: mged:class_source "ontology" xsd:string
property_value: mged:class_role "concrete" xsd:string
property_value: mged:unique_identifier "MO_79" xsd:string

[Term]
id: mged:SurfaceType
comment: Controlled terms for descriptors for coating of the substrate.
is_a: mged:ArrayDesignPackage
property_value: mged:unique_identifier "MO_198" xsd:string
property_value: mged:class_role "concrete" xsd:string
property_value: mged:class_source "ontology" xsd:string

[Term]
id: mged:TargetedCellType
comment: The target cell type is the cell of primary interest. The biomaterial may be derived from a mixed population of cells although only one cell type is of interest. 
is_a: mged:BioMaterialCharacteristics
is_a: mged:OntologyEntry
property_value: mged:class_role "abstract" xsd:string
property_value: mged:class_source "ontology" xsd:string
property_value: mged:unique_identifier "MO_123" xsd:string

[Term]
id: mged:TargetedCellTypeDatabase
comment: Database of targeted cell type information.
is_a: mged:Database
property_value: mged:class_role "concrete" xsd:string
property_value: mged:class_source "ontology" xsd:string
property_value: mged:unique_identifier "MO_45" xsd:string

[Term]
id: mged:TechnologicalDesign
comment: The purpose(s) for which the array is used within an experiment, e.g. to \n    assess the transcriptome, the genomic content, or to identify \n    transcription factor binding sites.
is_a: mged:ExperimentDesignType
property_value: mged:class_role "concrete" xsd:string
property_value: mged:class_source "ontology" xsd:string
property_value: mged:unique_identifier "MO_21" xsd:string

[Term]
id: mged:TechnologyType
comment: The technology type or platform of the reporters on the array.
is_a: mged:ArrayDesignPackage
property_value: mged:class_role "concrete" xsd:string
property_value: mged:unique_identifier "MO_18" xsd:string
property_value: mged:class_source "ontology" xsd:string

[Term]
id: mged:Temperature
comment: The temperature that a biosource is exposed to.
is_a: mged:GrowthCondition
property_value: mged:unique_identifier "MO_171" xsd:string
property_value: mged:class_role "abstract" xsd:string
property_value: mged:class_source "ontology" xsd:string

[Term]
id: mged:TemperatureUnit
comment: Units used for temperature measurements.
is_a: mged:Unit
property_value: mged:unique_identifier "MO_48" xsd:string
property_value: mged:class_source "ontology" xsd:string
property_value: mged:class_role "concrete" xsd:string

[Term]
id: mged:Test
comment: An assay performed on a biomaterial for the purposes of determining one or more biomaterial characteristics e.g. clinical chemistry.
is_a: mged:BioMaterialCharacteristics
relationship: mged:has_performer mged:Contact
relationship: mged:has_test_type mged:TestType
relationship: mged:has_test_result mged:TestResult
property_value: mged:unique_identifier "MO_197" xsd:string
property_value: mged:class_role "abstract" xsd:string
property_value: mged:class_source "ontology" xsd:string

[Term]
id: mged:TestResult
comment: TestResult is the recorded value of the test outcome.
is_a: mged:BioMaterialCharacteristics
relationship: mged:has_measurement mged:Measurement
property_value: mged:class_role "abstract" xsd:string
property_value: mged:class_source "ontology" xsd:string
property_value: mged:unique_identifier "MO_96" xsd:string

[Term]
id: mged:TestType
comment: Descriptor of the Test performed e.g. Leukocyte count
is_a: mged:OntologyEntry
is_a: mged:BioMaterialCharacteristics
relationship: mged:has_database mged:TestTypeDatabase
property_value: mged:class_source "ontology" xsd:string
property_value: mged:unique_identifier "MO_218" xsd:string
property_value: mged:class_role "abstract" xsd:string

[Term]
id: mged:TestTypeDatabase
comment: Database of codes for clinical findings.
is_a: mged:Database
property_value: mged:unique_identifier "MO_76" xsd:string
property_value: mged:class_source "ontology" xsd:string
property_value: mged:class_role "concrete" xsd:string

[Term]
id: mged:TheoreticalBioSequenceType
comment: A theoretical biosequence type is an abstraction used for annotation design of elements, e.g. gene, intron.
is_a: mged:BioSequenceType
property_value: mged:unique_identifier "MO_42" xsd:string
property_value: mged:class_role "concrete" xsd:string
property_value: mged:class_source "ontology" xsd:string

[Term]
id: mged:TimeUnit
comment: Units used for time measurements.
is_a: mged:Unit
property_value: mged:unique_identifier "MO_166" xsd:string
property_value: mged:class_role "concrete" xsd:string
property_value: mged:class_source "ontology" xsd:string

[Term]
id: mged:TimeUnitOther
comment: Time units not specified in MAGE.
is_a: mged:TimeUnit
property_value: mged:class_role "concrete" xsd:string
property_value: mged:class_source "ontology" xsd:string
property_value: mged:unique_identifier "MO_103" xsd:string

[Term]
id: mged:Transformation
comment: The process by which BioAssays (data, elements, quantitation types) are averaged normalized, selected, filtered, or otherwise changed into a new set of BioAssay data.
is_a: mged:BioAssayDataPackage
relationship: mged:has_protocol mged:Protocol
property_value: mged:unique_identifier "MO_216" xsd:string

[Term]
id: mged:Treatment
comment: A treatment is the process or action by which a biomaterial is created from an input biomaterial.
is_a: mged:BioMaterialPackage
relationship: mged:has_action mged:Action
relationship: mged:has_protocol mged:Protocol
relationship: mged:has_order xsd:int
property_value: mged:class_role "concrete" xsd:string
property_value: mged:class_source "mage" xsd:string
property_value: mged:unique_identifier "MO_23" xsd:string

[Term]
id: mged:TumorGrading
comment: A descriptor used in cancer biology to describe abnormalities of tumor cells. E.g. an instance from NCI Thesaurus. 
is_a: mged:OntologyEntry
is_a: mged:BioMaterialCharacteristics
relationship: mged:has_database mged:TumorGradingDatabase
property_value: mged:unique_identifier "MO_28" xsd:string
property_value: mged:class_role "abstract" xsd:string
property_value: mged:class_source "ontology" xsd:string

[Term]
id: mged:TumorGradingDatabase
comment: Database of tumor grading information
is_a: mged:Database
property_value: mged:class_source "ontology" xsd:string
property_value: mged:class_role "concrete" xsd:string
property_value: mged:unique_identifier "MO_187" xsd:string

[Term]
id: mged:URI
comment: Uniform Resource Identifier
is_a: mged:MGEDCoreOntology
property_value: mged:class_role "abstract" xsd:string
property_value: mged:class_source "ontology" xsd:string
property_value: mged:unique_identifier "MO_12" xsd:string

[Term]
id: mged:Unit
comment: Units of measure.
is_a: mged:MeasurementPackage
property_value: mged:class_role "abstract" xsd:string
property_value: mged:class_source "ontology" xsd:string
property_value: mged:unique_identifier "MO_3" xsd:string

[Term]
id: mged:User
comment: User is a way to id a person in a database
is_a: mged:MGEDExtendedOntology
relationship: mged:has_ID xsd:string
property_value: mged:unique_identifier "MO_62" xsd:string

[Term]
id: mged:VolumeUnit
comment: Units used for volume measurements.
is_a: mged:Unit
property_value: mged:unique_identifier "MO_179" xsd:string
property_value: mged:class_role "concrete" xsd:string
property_value: mged:class_source "ontology" xsd:string

[Term]
id: mged:VolumeUnitOther
comment: Volume units not specified in MAGE.
is_a: mged:VolumeUnit
property_value: mged:class_source "ontology" xsd:string
property_value: mged:class_role "place_holder" xsd:string
property_value: mged:unique_identifier "MO_155" xsd:string

[Term]
id: mged:WarningType
comment: Controlled terms for descriptors of the warnings associated with reporters.
is_a: mged:DesignElementPackage
property_value: mged:class_source "ontology" xsd:string
property_value: mged:class_role "concrete" xsd:string
property_value: mged:unique_identifier "MO_41" xsd:string

[Term]
id: mged:Water
comment: Water consumed by or enveloping the organism that the biosource is derived from. 
is_a: mged:GrowthCondition
relationship: mged:has_additive mged:Compound
relationship: mged:has_treatment mged:Protocol
property_value: mged:class_role "abstract" xsd:string
property_value: mged:unique_identifier "MO_153" xsd:string
property_value: mged:class_source "ontology" xsd:string

[Term]
id: mged:ZoneDefect
comment: A technical manufactured described defect for zones.
is_a: mged:ArrayPackage
relationship: mged:has_type mged:DefectType
property_value: mged:class_source "mage" xsd:string
property_value: mged:class_role "concrete" xsd:string
property_value: mged:unique_identifier "MO_105" xsd:string

[Typedef]
id: mged:class_role
comment: This property is used to identify the type of class of the term. The value \"abstract\" indicates that the class is used for organizational purposes.  The value \"instantiated\" indicates that the class contains Individuals that can be used as annotation terms. The value \"abstract\" indicates that the class is used to provide organization within the MGED Ontology. The value \"place_holder\" indicates that this class represents the location in the ontology where terms of this class would be located.
range: __file:///Users/cjm/obo-utils/obo-all/mged/mged.owl#__Description194
property_value: rdfs:comment "This property is used to identify the type of class of the term. The value \"abstract\" indicates that the class is used for organizational purposes.  The value \"instantiated\" indicates that the class contains Individuals that can be used as annotation terms. The value \"abstract\" indicates that the class is used to provide organization within the MGED Ontology. The value \"place_holder\" indicates that this class represents the location in the ontology where terms of this class would be located." xsd:string
property_value: mged:unique_identifier "MO_338" xsd:string

[Typedef]
id: mged:class_role
comment: This property is used to identify the type of class of the term. The value \"abstract\" indicates that the class is used for organizational purposes.  The value \"instantiated\" indicates that the class contains Individuals that can be used as annotation terms. The value \"abstract\" indicates that the class is used to provide organization within the MGED Ontology. The value \"place_holder\" indicates that this class represents the location in the ontology where terms of this class would be located.
range: __file:///Users/cjm/obo-utils/obo-all/mged/mged.owl#__Description194
property_value: rdfs:comment "This property is used to identify the type of class of the term. The value \"abstract\" indicates that the class is used for organizational purposes.  The value \"instantiated\" indicates that the class contains Individuals that can be used as annotation terms. The value \"abstract\" indicates that the class is used to provide organization within the MGED Ontology. The value \"place_holder\" indicates that this class represents the location in the ontology where terms of this class would be located." xsd:string
property_value: mged:unique_identifier "MO_338" xsd:string

[Typedef]
id: mged:class_source
comment: The property indicates the derivation of the class. A value of \"mage\" means that the class is derived from the MAGE-OM and the value \"ontology\" indicates that the class is derived from the ontology. This property is being added since the MGED Ontology was developed in such a way to include classes that exist in the MAGE-OM as well as classes that exist only in the MGED Ontology.
range: __file:///Users/cjm/obo-utils/obo-all/mged/mged.owl#__Description198
property_value: mged:unique_identifier "MO_343" xsd:string
property_value: rdfs:comment "The property indicates the derivation of the class. A value of \"mage\" means that the class is derived from the MAGE-OM and the value \"ontology\" indicates that the class is derived from the ontology. This property is being added since the MGED Ontology was developed in such a way to include classes that exist in the MAGE-OM as well as classes that exist only in the MGED Ontology." xsd:string

[Typedef]
id: mged:class_source
comment: The property indicates the derivation of the class. A value of \"mage\" means that the class is derived from the MAGE-OM and the value \"ontology\" indicates that the class is derived from the ontology. This property is being added since the MGED Ontology was developed in such a way to include classes that exist in the MAGE-OM as well as classes that exist only in the MGED Ontology.
range: __file:///Users/cjm/obo-utils/obo-all/mged/mged.owl#__Description198
property_value: mged:unique_identifier "MO_343" xsd:string
property_value: rdfs:comment "The property indicates the derivation of the class. A value of \"mage\" means that the class is derived from the MAGE-OM and the value \"ontology\" indicates that the class is derived from the ontology. This property is being added since the MGED Ontology was developed in such a way to include classes that exist in the MAGE-OM as well as classes that exist only in the MGED Ontology." xsd:string

[Typedef]
id: mged:deprecated_from_version
comment: property indicating the version of the MGED Ontology that the term was deprecated from
property_value: mged:unique_identifier "MO_299" xsd:string
property_value: rdfs:comment "property indicating the version of the MGED Ontology that the term was deprecated from" xsd:string

[Typedef]
id: mged:deprecation_in_version
comment: The value of the property indicates what version of the ontology the term was deprecated from.
range: __file:///Users/cjm/obo-utils/obo-all/mged/mged.owl#__Description188
property_value: rdfs:comment "The value of the property indicates what version of the ontology the term was deprecated from." xsd:string
property_value: mged:unique_identifier "MO_1014" xsd:string

[Typedef]
id: mged:deprecation_in_version
comment: The value of the property indicates what version of the ontology the term was deprecated from.
range: __file:///Users/cjm/obo-utils/obo-all/mged/mged.owl#__Description188
property_value: rdfs:comment "The value of the property indicates what version of the ontology the term was deprecated from." xsd:string
property_value: mged:unique_identifier "MO_1014" xsd:string

[Typedef]
id: mged:deprecation_old_parent
comment: The value indicates the parent of the term before the term was deprecated.
property_value: rdfs:comment "The value indicates the parent of the term before the term was deprecated." xsd:string
property_value: mged:unique_identifier "MO_1016" xsd:string

[Typedef]
id: mged:deprecation_old_parent
comment: The value indicates the parent of the term before the term was deprecated.
property_value: rdfs:comment "The value indicates the parent of the term before the term was deprecated." xsd:string
property_value: mged:unique_identifier "MO_1016" xsd:string

[Typedef]
id: mged:deprecation_old_restriction
comment: The value of the property indicates the restriction that was applied to the class at the time it was deprecated. The value is in the form of: some|property|filler, e.g. some|has_species|Organism.
property_value: rdfs:comment "The value of the property indicates the restriction that was applied to the class at the time it was deprecated. The value is in the form of: some|property|filler, e.g. some|has_species|Organism." xsd:string
property_value: mged:unique_identifier "MO_1015" xsd:string

[Typedef]
id: mged:deprecation_old_restriction
comment: The value of the property indicates the restriction that was applied to the class at the time it was deprecated. The value is in the form of: some|property|filler, e.g. some|has_species|Organism.
property_value: rdfs:comment "The value of the property indicates the restriction that was applied to the class at the time it was deprecated. The value is in the form of: some|property|filler, e.g. some|has_species|Organism." xsd:string
property_value: mged:unique_identifier "MO_1015" xsd:string

[Typedef]
id: mged:deprecation_reason
comment: Indicates the why the term was deprecated. The possible values are: deleted_term, split_term, merged_term, replaced_term.
range: __file:///Users/cjm/obo-utils/obo-all/mged/mged.owl#__Description202
property_value: rdfs:comment "Indicates the why the term was deprecated. The possible values are: deleted_term, split_term, merged_term, replaced_term." xsd:string
property_value: mged:unique_identifier "MO_1013" xsd:string

[Typedef]
id: mged:deprecation_reason
comment: Indicates the why the term was deprecated. The possible values are: deleted_term, split_term, merged_term, replaced_term.
range: __file:///Users/cjm/obo-utils/obo-all/mged/mged.owl#__Description202
property_value: rdfs:comment "Indicates the why the term was deprecated. The possible values are: deleted_term, split_term, merged_term, replaced_term." xsd:string
property_value: mged:unique_identifier "MO_1013" xsd:string

[Typedef]
id: mged:deprecation_replacement_term
comment: The value of the property indicates the replacement term for the deprecated term. If the term is deprecated without replacement, the value of the property will be the same as the deprecated term itself.
property_value: mged:unique_identifier "MO_1012" xsd:string
property_value: rdfs:comment "The value of the property indicates the replacement term for the deprecated term. If the term is deprecated without replacement, the value of the property will be the same as the deprecated term itself." xsd:string

[Typedef]
id: mged:deprecation_replacement_term
comment: The value of the property indicates the replacement term for the deprecated term. If the term is deprecated without replacement, the value of the property will be the same as the deprecated term itself.
property_value: mged:unique_identifier "MO_1012" xsd:string
property_value: rdfs:comment "The value of the property indicates the replacement term for the deprecated term. If the term is deprecated without replacement, the value of the property will be the same as the deprecated term itself." xsd:string

[Typedef]
id: mged:has_ID
comment: property indicating that the class has an identifier
property_value: mged:unique_identifier "MO_323" xsd:string
property_value: rdfs:comment "property indicating that the class has an identifier" xsd:string

[Typedef]
id: mged:has_MAGE_description
comment: property indicating that the class has an association to a MAGE description
property_value: mged:unique_identifier "MO_260" xsd:string
property_value: rdfs:comment "property indicating that the class has an association to a MAGE description" xsd:string

[Typedef]
id: mged:has_URI
comment: property indicating that the class has a URI
property_value: rdfs:comment "property indicating that the class has a URI" xsd:string
property_value: mged:unique_identifier "MO_340" xsd:string

[Typedef]
id: mged:has_accession
comment: property indicating that the class has an accession number
property_value: mged:unique_identifier "MO_231" xsd:string
property_value: rdfs:comment "property indicating that the class has an accession number" xsd:string

[Typedef]
id: mged:has_accession_version
comment: property indicating that the class has an accession number version
property_value: mged:unique_identifier "MO_339" xsd:string
property_value: rdfs:comment "property indicating that the class has an accession number version" xsd:string

[Typedef]
id: mged:has_action
comment: property indicating that the class has an action
property_value: rdfs:comment "property indicating that the class has an action" xsd:string
property_value: mged:unique_identifier "MO_312" xsd:string

[Typedef]
id: mged:has_additive
comment: property indicating that the class has an additive
property_value: rdfs:comment "property indicating that the class has an additive" xsd:string
property_value: mged:unique_identifier "MO_314" xsd:string

[Typedef]
id: mged:has_address
comment: property indicating that the class has an address
property_value: rdfs:comment "property indicating that the class has an address" xsd:string
property_value: mged:unique_identifier "MO_277" xsd:string

[Typedef]
id: mged:has_affiliation
comment: property indicating that the class has an affiliation to an institution
property_value: mged:unique_identifier "MO_309" xsd:string
property_value: rdfs:comment "property indicating that the class has an affiliation to an institution" xsd:string

[Typedef]
id: mged:has_atmospheric_component
comment: property indicating that the class has an atmospheric component
property_value: rdfs:comment "property indicating that the class has an atmospheric component" xsd:string
property_value: mged:unique_identifier "MO_259" xsd:string

[Typedef]
id: mged:has_authors
comment: property indicating that the class has authors
property_value: rdfs:comment "property indicating that the class has authors" xsd:string
property_value: mged:unique_identifier "MO_318" xsd:string

[Typedef]
id: mged:has_been_treated
comment: property indicating that the class has been treated
property_value: mged:unique_identifier "MO_341" xsd:string
property_value: rdfs:comment "property indicating that the class has been treated" xsd:string

[Typedef]
id: mged:has_bioassay_data
comment: property indicating that the class has bioassaydata
property_value: rdfs:comment "property indicating that the class has bioassaydata" xsd:string
property_value: mged:unique_identifier "MO_252" xsd:string

[Typedef]
id: mged:has_bioassays
comment: property indicating that the class has bioassays
property_value: rdfs:comment "property indicating that the class has bioassays" xsd:string
property_value: mged:unique_identifier "MO_238" xsd:string

[Typedef]
id: mged:has_biomaterial_characteristics
comment: property indicating that the class has biomaterial characteristics
property_value: rdfs:comment "property indicating that the class has biomaterial characteristics" xsd:string
property_value: mged:unique_identifier "MO_272" xsd:string

[Typedef]
id: mged:has_biosource_type
comment: property indicating that the class has a biosource type
domain: mged:BioSourceProvider
property_value: mged:unique_identifier "MO_315" xsd:string
property_value: rdfs:comment "property indicating that the class has a biosource type" xsd:string

[Typedef]
id: mged:has_cancer_site
comment: property indicating that the class has a cancer site
property_value: mged:unique_identifier "MO_248" xsd:string
property_value: rdfs:comment "property indicating that the class has a cancer site" xsd:string

[Typedef]
id: mged:has_category
comment: property indicating that the class has a category
property_value: rdfs:comment "property indicating that the class has a category" xsd:string
property_value: mged:unique_identifier "MO_249" xsd:string

[Typedef]
id: mged:has_chromosomal_aberration_classification
comment: property indicating that the class has a chromosomal aberration classification
property_value: rdfs:comment "property indicating that the class has a chromosomal aberration classification" xsd:string
property_value: mged:unique_identifier "MO_253" xsd:string

[Typedef]
id: mged:has_citation
comment: property indicating that the class has a citation
property_value: mged:unique_identifier "MO_274" xsd:string
property_value: rdfs:comment "property indicating that the class has a citation" xsd:string

[Typedef]
id: mged:has_clinical_finding
comment: property indicating that the class has a clinical finding
property_value: rdfs:comment "property indicating that the class has a clinical finding" xsd:string
property_value: mged:unique_identifier "MO_316" xsd:string

[Typedef]
id: mged:has_clinical_record
comment: property indicating that the class has a clinical record
property_value: mged:unique_identifier "MO_247" xsd:string
property_value: rdfs:comment "property indicating that the class has a clinical record" xsd:string

[Typedef]
id: mged:has_clinical_treatment
comment: property indicating that the class has a clinical treatment
property_value: mged:unique_identifier "MO_282" xsd:string
property_value: rdfs:comment "property indicating that the class has a clinical treatment" xsd:string

[Typedef]
id: mged:has_compound
comment: property indicating that the class has a compound
property_value: mged:unique_identifier "MO_302" xsd:string
property_value: rdfs:comment "property indicating that the class has a compound" xsd:string

[Typedef]
id: mged:has_cubic_volume
comment: property indicating that the class contains a cubic volume measurement
property_value: rdfs:comment "property indicating that the class contains a cubic volume measurement" xsd:string
property_value: mged:unique_identifier "MO_245" xsd:string

[Typedef]
id: mged:has_database
comment: property indicating that the class has a database
property_value: mged:unique_identifier "MO_233" xsd:string
property_value: rdfs:comment "property indicating that the class has a database" xsd:string

[Typedef]
id: mged:has_database_entry_type
comment: property indicating that the class has a database entry type
property_value: mged:unique_identifier "MO_240" xsd:string
property_value: rdfs:comment "property indicating that the class has a database entry type" xsd:string

[Typedef]
id: mged:has_description
comment: property indicating that the class has a description
property_value: rdfs:comment "property indicating that the class has a description" xsd:string
property_value: mged:unique_identifier "MO_334" xsd:string

[Typedef]
id: mged:has_diameter
comment: property indicating that the class has a diameter
property_value: rdfs:comment "property indicating that the class has a diameter" xsd:string
property_value: mged:unique_identifier "MO_301" xsd:string

[Typedef]
id: mged:has_disease_location
comment: property indicating the location of the disease.
property_value: rdfs:comment "property indicating the location of the disease." xsd:string
property_value: mged:unique_identifier "MO_290" xsd:string

[Typedef]
id: mged:has_disease_staging
comment: property indicating that the class has disease staging
property_value: mged:unique_identifier "MO_275" xsd:string
property_value: rdfs:comment "property indicating that the class has disease staging" xsd:string

[Typedef]
id: mged:has_disease_state
comment: property indicating that the class has a disease state
property_value: rdfs:comment "property indicating that the class has a disease state" xsd:string
property_value: mged:unique_identifier "MO_305" xsd:string

[Typedef]
id: mged:has_donor
comment: property indicating that the class has a donor
property_value: rdfs:comment "property indicating that the class has a donor" xsd:string
property_value: mged:unique_identifier "MO_342" xsd:string

[Typedef]
id: mged:has_editor
comment: property indicating that the class has an editor
property_value: rdfs:comment "property indicating that the class has an editor" xsd:string
property_value: mged:unique_identifier "MO_256" xsd:string

[Typedef]
id: mged:has_email
comment: property indicating that the class has an email address
property_value: mged:unique_identifier "MO_293" xsd:string
property_value: rdfs:comment "property indicating that the class has an email address" xsd:string

[Typedef]
id: mged:has_experiment_design
comment: property indicating that the class has an experiment design
property_value: rdfs:comment "property indicating that the class has an experiment design" xsd:string
property_value: mged:unique_identifier "MO_291" xsd:string

[Typedef]
id: mged:has_experiment_design_type
comment: property indicating that the class has an experiment design type
property_value: rdfs:comment "property indicating that the class has an experiment design type" xsd:string
property_value: mged:unique_identifier "MO_288" xsd:string

[Typedef]
id: mged:has_experiment_factors
comment: property indicating that the class has experiment factors
property_value: mged:unique_identifier "MO_328" xsd:string
property_value: rdfs:comment "property indicating that the class has experiment factors" xsd:string

[Typedef]
id: mged:has_factor_value
comment: property indicating that the class has a factor value
property_value: rdfs:comment "property indicating that the class has a factor value" xsd:string
property_value: mged:unique_identifier "MO_236" xsd:string

[Typedef]
id: mged:has_factor_value_ontology_entry
comment: property indicating that the class has an ontology entry
property_value: rdfs:comment "property indicating that the class has an ontology entry" xsd:string
property_value: mged:unique_identifier "MO_263" xsd:string

[Typedef]
id: mged:has_family_member
comment: property indicating that the class has a family member
property_value: mged:unique_identifier "MO_243" xsd:string
property_value: rdfs:comment "property indicating that the class has a family member" xsd:string

[Typedef]
id: mged:has_family_relationship
comment: property indicating that the class has a family relationship
property_value: mged:unique_identifier "MO_250" xsd:string
property_value: rdfs:comment "property indicating that the class has a family relationship" xsd:string

[Typedef]
id: mged:has_fax
comment: property indicating that the class has a fax
property_value: rdfs:comment "property indicating that the class has a fax" xsd:string
property_value: mged:unique_identifier "MO_289" xsd:string

[Typedef]
id: mged:has_feature_shape
comment: property indicating that the class has a feature shape
property_value: mged:unique_identifier "MO_268" xsd:string
property_value: rdfs:comment "property indicating that the class has a feature shape" xsd:string

[Typedef]
id: mged:has_fiducials
comment: property indicating that the class has fiducials
property_value: rdfs:comment "property indicating that the class has fiducials" xsd:string
property_value: mged:unique_identifier "MO_267" xsd:string

[Typedef]
id: mged:has_first_name
comment: property indicating that the class has a first name
property_value: mged:unique_identifier "MO_258" xsd:string
property_value: rdfs:comment "property indicating that the class has a first name" xsd:string

[Typedef]
id: mged:has_hardware
comment: property indicating that the class has hardware
property_value: mged:unique_identifier "MO_286" xsd:string
property_value: rdfs:comment "property indicating that the class has hardware" xsd:string

[Typedef]
id: mged:has_height
comment: property indicating that the class has a height
property_value: mged:unique_identifier "MO_317" xsd:string
property_value: rdfs:comment "property indicating that the class has a height" xsd:string

[Typedef]
id: mged:has_host
comment: property indicating that the class has a host
domain: mged:Host
property_value: rdfs:comment "property indicating that the class has a host" xsd:string
property_value: mged:unique_identifier "MO_313" xsd:string

[Typedef]
id: mged:has_host_part
comment: property indicating that the class has a host part
domain: mged:Host
property_value: mged:unique_identifier "MO_283" xsd:string
property_value: rdfs:comment "property indicating that the class has a host part" xsd:string

[Typedef]
id: mged:has_human_readable_URI
comment: property indicating that the contents found at this uri are human readable
property_value: mged:unique_identifier "MO_330" xsd:string
property_value: rdfs:comment "property indicating that the contents found at this uri are human readable" xsd:string

[Typedef]
id: mged:has_image_format
comment: property indicating that the class has an image format
domain: mged:PhysicalBioAssay
property_value: rdfs:comment "property indicating that the class has an image format" xsd:string
property_value: mged:unique_identifier "MO_234" xsd:string

[Typedef]
id: mged:has_individual
comment: property indicating that the class has an individual
property_value: mged:unique_identifier "MO_327" xsd:string
property_value: rdfs:comment "property indicating that the class has an individual" xsd:string

[Typedef]
id: mged:has_individual_genetic_characteristics
comment: property indicating that the class has individual genetic characteristics
property_value: mged:unique_identifier "MO_254" xsd:string
property_value: rdfs:comment "property indicating that the class has individual genetic characteristics" xsd:string

[Typedef]
id: mged:has_initial_time_point
comment: property indicating that the class has an individual time point
domain: mged:Age
property_value: rdfs:comment "property indicating that the class has an individual time point" xsd:string
property_value: mged:unique_identifier "MO_292" xsd:string

[Typedef]
id: mged:has_issue
comment: property indicating that the class has an issue
domain: mged:BibliographicReference
property_value: mged:unique_identifier "MO_294" xsd:string
property_value: rdfs:comment "property indicating that the class has an issue" xsd:string

[Typedef]
id: mged:has_laboratory_test
comment: property indicating that the class has a laboratory test
property_value: mged:unique_identifier "MO_281" xsd:string
property_value: rdfs:comment "property indicating that the class has a laboratory test" xsd:string

[Typedef]
id: mged:has_last_name
comment: property indicating that the class has a last name
property_value: rdfs:comment "property indicating that the class has a last name" xsd:string
property_value: mged:unique_identifier "MO_255" xsd:string

[Typedef]
id: mged:has_length

[Typedef]
id: mged:has_machine_readable_URI
comment: property indicating that the contents found at this uri are machine readable (i.e. in a standard format)
property_value: rdfs:comment "property indicating that the contents found at this uri are machine readable (i.e. in a standard format)" xsd:string
property_value: mged:unique_identifier "MO_336" xsd:string

[Typedef]
id: mged:has_make
comment: property indicating that the class has a make
domain: mged:Hardware
property_value: mged:unique_identifier "MO_271" xsd:string
property_value: rdfs:comment "property indicating that the class has a make" xsd:string

[Typedef]
id: mged:has_manufacturer
comment: property indicating that the class has a manufacturer
property_value: mged:unique_identifier "MO_232" xsd:string
property_value: rdfs:comment "property indicating that the class has a manufacturer" xsd:string

[Typedef]
id: mged:has_mass
comment: property indicating that the class has a mass
property_value: rdfs:comment "property indicating that the class has a mass" xsd:string
property_value: mged:unique_identifier "MO_280" xsd:string

[Typedef]
id: mged:has_maximum_measurement
comment: property indicating that the class has a maximum measurement
domain: mged:Age
property_value: rdfs:comment "property indicating that the class has a maximum measurement" xsd:string
property_value: mged:unique_identifier "MO_297" xsd:string

[Typedef]
id: mged:has_measurement
comment: property indicating that the class has a measurement
property_value: mged:unique_identifier "MO_325" xsd:string
property_value: rdfs:comment "property indicating that the class has a measurement" xsd:string

[Typedef]
id: mged:has_measurement_type
comment: property indicating that the class has a measurement type
domain: mged:Measurement
property_value: rdfs:comment "property indicating that the class has a measurement type" xsd:string
property_value: mged:unique_identifier "MO_242" xsd:string

[Typedef]
id: mged:has_mid_initials
comment: property indicating that the class has a middle initials
property_value: mged:unique_identifier "MO_237" xsd:string
property_value: rdfs:comment "property indicating that the class has a middle initials" xsd:string

[Typedef]
id: mged:has_model
comment: property indicating that the class has a model
domain: mged:Hardware
property_value: rdfs:comment "property indicating that the class has a model" xsd:string
property_value: mged:unique_identifier "MO_270" xsd:string

[Typedef]
id: mged:has_name
comment: property indicating that the class has a name
property_value: mged:unique_identifier "MO_296" xsd:string
property_value: rdfs:comment "property indicating that the class has a name" xsd:string

[Typedef]
id: mged:has_node_value
comment: property indicating that the class has a node value
property_value: mged:unique_identifier "MO_310" xsd:string
property_value: rdfs:comment "property indicating that the class has a node value" xsd:string

[Typedef]
id: mged:has_node_value_type
comment: property indicating that the class has a node value type
property_value: mged:unique_identifier "MO_264" xsd:string
property_value: rdfs:comment "property indicating that the class has a node value type" xsd:string

[Typedef]
id: mged:has_nodes
comment: property indicating that the class has a node
property_value: mged:unique_identifier "MO_307" xsd:string
property_value: rdfs:comment "property indicating that the class has a node" xsd:string

[Typedef]
id: mged:has_nutrient_component
comment: property indicating that the class has a nutrient component
property_value: rdfs:comment "property indicating that the class has a nutrient component" xsd:string
property_value: mged:unique_identifier "MO_321" xsd:string

[Typedef]
id: mged:has_order
comment: property indicating that the class has an order
property_value: rdfs:comment "property indicating that the class has an order" xsd:string
property_value: mged:unique_identifier "MO_335" xsd:string

[Typedef]
id: mged:has_organism_part
comment: property indicating that the class has an organism part
property_value: rdfs:comment "property indicating that the class has an organism part" xsd:string
property_value: mged:unique_identifier "MO_285" xsd:string

[Typedef]
id: mged:has_owner
comment: property indicating that the class has an owner
property_value: rdfs:comment "property indicating that the class has an owner" xsd:string
property_value: mged:unique_identifier "MO_278" xsd:string

[Typedef]
id: mged:has_pages
comment: property indicating that the class has pages
domain: mged:BibliographicReference
property_value: rdfs:comment "property indicating that the class has pages" xsd:string
property_value: mged:unique_identifier "MO_246" xsd:string

[Typedef]
id: mged:has_parent_organization
comment: property indicating that the class has a parent organization
property_value: rdfs:comment "property indicating that the class has a parent organization" xsd:string
property_value: mged:unique_identifier "MO_257" xsd:string

[Typedef]
id: mged:has_part_modified
comment: property indicating that the class has a modified part
property_value: rdfs:comment "property indicating that the class has a modified part" xsd:string
property_value: mged:unique_identifier "MO_241" xsd:string

[Typedef]
id: mged:has_performer
comment: property indicating that the protocol has a performer or contact person
property_value: rdfs:comment "property indicating that the protocol has a performer or contact person" xsd:string
property_value: mged:unique_identifier "MO_273" xsd:string

[Typedef]
id: mged:has_phone
comment: property indicating that the class has a phone
property_value: rdfs:comment "property indicating that the class has a phone" xsd:string
property_value: mged:unique_identifier "MO_235" xsd:string

[Typedef]
id: mged:has_prior_disease_state
comment: property indicating that the class has a prior disease state
property_value: mged:unique_identifier "MO_276" xsd:string
property_value: rdfs:comment "property indicating that the class has a prior disease state" xsd:string

[Typedef]
id: mged:has_property_set
comment: property indicating that the class has a property set
property_value: rdfs:comment "property indicating that the class has a property set" xsd:string
property_value: mged:unique_identifier "MO_266" xsd:string

[Typedef]
id: mged:has_protocol
comment: property indicating that the class has a protocol
property_value: rdfs:comment "property indicating that the class has a protocol" xsd:string
property_value: mged:unique_identifier "MO_300" xsd:string

[Typedef]
id: mged:has_providers
comment: property indicating that the class has providers
property_value: mged:unique_identifier "MO_303" xsd:string
property_value: rdfs:comment "property indicating that the class has providers" xsd:string

[Typedef]
id: mged:has_publication
comment: property indicating that the class has a publication
property_value: mged:unique_identifier "MO_251" xsd:string
property_value: rdfs:comment "property indicating that the class has a publication" xsd:string

[Typedef]
id: mged:has_publisher
comment: property indicating that the class has a publisher
property_value: rdfs:comment "property indicating that the class has a publisher" xsd:string
property_value: mged:unique_identifier "MO_295" xsd:string

[Typedef]
id: mged:has_reason_for_deprecation
comment: property to indicate the reason for deprecating a term
property_value: rdfs:comment "property to indicate the reason for deprecating a term" xsd:string
property_value: mged:unique_identifier "MO_306" xsd:string

[Typedef]
id: mged:has_result
comment: property indicating the class has a result
property_value: mged:unique_identifier "MO_324" xsd:string
property_value: rdfs:comment "property indicating the class has a result" xsd:string

[Typedef]
id: mged:has_scale
comment: property indicating that the class has a scale
property_value: mged:unique_identifier "MO_287" xsd:string
property_value: rdfs:comment "property indicating that the class has a scale" xsd:string

[Typedef]
id: mged:has_software
comment: property indicating that the class has software
property_value: mged:unique_identifier "MO_284" xsd:string
property_value: rdfs:comment "property indicating that the class has software" xsd:string

[Typedef]
id: mged:has_species
comment: property indicating that the class has species
property_value: rdfs:comment "property indicating that the class has species" xsd:string
property_value: mged:unique_identifier "MO_320" xsd:string

[Typedef]
id: mged:has_test_protocol
comment: property indicating that the test has a test protocol
property_value: rdfs:comment "property indicating that the test has a test protocol" xsd:string
property_value: mged:unique_identifier "MO_244" xsd:string

[Typedef]
id: mged:has_test_result
comment: property indicating that the test has a test result
property_value: rdfs:comment "property indicating that the test has a test result" xsd:string
property_value: mged:unique_identifier "MO_261" xsd:string

[Typedef]
id: mged:has_test_type
comment: property indicating that the class has a clinical test
property_value: rdfs:comment "property indicating that the class has a clinical test" xsd:string
property_value: mged:unique_identifier "MO_311" xsd:string

[Typedef]
id: mged:has_text
comment: property indicating that the class has text
property_value: mged:unique_identifier "MO_298" xsd:string
property_value: rdfs:comment "property indicating that the class has text" xsd:string

[Typedef]
id: mged:has_title
comment: property indicating that the class has a title
property_value: mged:unique_identifier "MO_337" xsd:string
property_value: rdfs:comment "property indicating that the class has a title" xsd:string

[Typedef]
id: mged:has_toll_free_phone
comment: property indicating that the class has a toll free phone
property_value: mged:unique_identifier "MO_329" xsd:string
property_value: rdfs:comment "property indicating that the class has a toll free phone" xsd:string

[Typedef]
id: mged:has_treatment
comment: property indicating that the class has a treatment
property_value: mged:unique_identifier "MO_262" xsd:string
property_value: rdfs:comment "property indicating that the class has a treatment" xsd:string

[Typedef]
id: mged:has_type
comment: property indicating that the class has a type
property_value: mged:unique_identifier "MO_319" xsd:string
property_value: rdfs:comment "property indicating that the class has a type" xsd:string

[Typedef]
id: mged:has_units
comment: property indicating that the class has units
property_value: mged:unique_identifier "MO_269" xsd:string
property_value: rdfs:comment "property indicating that the class has units" xsd:string

[Typedef]
id: mged:has_value
comment: property indicating that the class has a value
property_value: rdfs:comment "property indicating that the class has a value" xsd:string
property_value: mged:unique_identifier "MO_326" xsd:string

[Typedef]
id: mged:has_version
comment: property indicating that the class has a version
property_value: rdfs:comment "property indicating that the class has a version" xsd:string
property_value: mged:unique_identifier "MO_239" xsd:string

[Typedef]
id: mged:has_volume
comment: property indicating that the class has a volume
domain: mged:BibliographicReference
property_value: rdfs:comment "property indicating that the class has a volume" xsd:string
property_value: mged:unique_identifier "MO_308" xsd:string

[Typedef]
id: mged:has_year
comment: property indicating that the class has a year
property_value: rdfs:comment "property indicating that the class has a year" xsd:string
property_value: mged:unique_identifier "MO_322" xsd:string

[Typedef]
id: mged:is_solvent
comment: property indicating that the class is a solvent
property_value: rdfs:comment "property indicating that the class is a solvent" xsd:string
property_value: mged:unique_identifier "MO_332" xsd:string

[Typedef]
id: mged:is_user_defined
comment: property indicating that the class is user defined
property_value: mged:unique_identifier "MO_279" xsd:string
property_value: rdfs:comment "property indicating that the class is user defined" xsd:string

[Typedef]
id: mged:replaced_with_term
comment: The value of the property indicates the replacement term.
property_value: mged:unique_identifier "MO_1018" xsd:string
property_value: rdfs:comment "The value of the property indicates the replacement term." xsd:string

[Typedef]
id: mged:replaced_with_term
comment: The value of the property indicates the replacement term.
property_value: mged:unique_identifier "MO_1018" xsd:string
property_value: rdfs:comment "The value of the property indicates the replacement term." xsd:string

[Typedef]
id: mged:split_to_term
comment: The value of the property indicates a replacement term since the term was split.
property_value: mged:unique_identifier "MO_1017" xsd:string
property_value: rdfs:comment "The value of the property indicates a replacement term since the term was split." xsd:string

[Typedef]
id: mged:split_to_term
comment: The value of the property indicates a replacement term since the term was split.
property_value: mged:unique_identifier "MO_1017" xsd:string
property_value: rdfs:comment "The value of the property indicates a replacement term since the term was split." xsd:string

[Typedef]
id: mged:synonym
comment: This property is used to indicate additional terms that have the same meaning as the term that the property is applied to. The terms that have the same meaning as the term that this property is applied to will be the value of the property.
range: xsd:string
property_value: mged:unique_identifier "MO_333" xsd:string
property_value: rdfs:comment "This property is used to indicate additional terms that have the same meaning as the term that the property is applied to. The terms that have the same meaning as the term that this property is applied to will be the value of the property." xsd:string

[Typedef]
id: mged:synonym
comment: This property is used to indicate additional terms that have the same meaning as the term that the property is applied to. The terms that have the same meaning as the term that this property is applied to will be the value of the property.
range: xsd:string
property_value: mged:unique_identifier "MO_333" xsd:string
property_value: rdfs:comment "This property is used to indicate additional terms that have the same meaning as the term that the property is applied to. The terms that have the same meaning as the term that this property is applied to will be the value of the property." xsd:string

[Typedef]
id: mged:unique_identifier
comment: A unique alphanumeric identifier for the term. This will exist in the form of MO_someNumber, e.g. MO_123.
property_value: mged:unique_identifier "MO_331" xsd:string
property_value: rdfs:comment "A unique alphanumeric identifier for the term. This will exist in the form of MO_someNumber, e.g. MO_123." xsd:string

[Typedef]
id: mged:unique_identifier
comment: A unique alphanumeric identifier for the term. This will exist in the form of MO_someNumber, e.g. MO_123.
property_value: mged:unique_identifier "MO_331" xsd:string
property_value: rdfs:comment "A unique alphanumeric identifier for the term. This will exist in the form of MO_someNumber, e.g. MO_123." xsd:string

[Typedef]
id: mged:was_replaced_by
comment: instance property to indicate what the term was replaced by
property_value: rdfs:comment "instance property to indicate what the term was replaced by" xsd:string
property_value: mged:unique_identifier "MO_304" xsd:string

[Typedef]
id: mged:was_tested_for
comment: property indicating that the class was tested for
property_value: mged:unique_identifier "MO_265" xsd:string
property_value: rdfs:comment "property indicating that the class was tested for" xsd:string

[Instance]
id: mged:A
instance_of: mged:DistanceUnit
property_value: rdfs:comment "Angstrom, unit of distance, 1 angstrom is one tenth of a nanometer" xsd:string
property_value: mged:unique_identifier "MO_515" xsd:string

[Instance]
id: mged:ATCC_Cultures
instance_of: mged:CellLineDatabase
property_value: rdfs:comment "database resource for bacteria, bacteriophages, cell lines, fungi and yeast, plant tissue cultures, plant seeds, protozoa and algae and plant and animal viruses" xsd:string
property_value: mged:has_human_readable_URI "http://www.atcc.org/Cultures/Products.cfm" xsd:string
property_value: mged:unique_identifier "MO_979" xsd:string

[Instance]
id: mged:ATCC_Cultures
instance_of: mged:CellLineDatabase
property_value: rdfs:comment "database resource for bacteria, bacteriophages, cell lines, fungi and yeast, plant tissue cultures, plant seeds, protozoa and algae and plant and animal viruses" xsd:string
property_value: mged:has_human_readable_URI "http://www.atcc.org/Cultures/Products.cfm" xsd:string
property_value: mged:unique_identifier "MO_979" xsd:string

[Instance]
id: mged:Adult_Mouse_Anatomy
instance_of: mged:OrganismPartDatabase
property_value: mged:unique_identifier "MO_992" xsd:string
property_value: rdfs:comment "This ontology describes the anatomy of the adult mouse. It contains anatomical structures for the postnatal mouse (Theiler stage 28)." xsd:string
property_value: mged:has_machine_readable_URI "http://cvs.sourceforge.net/viewcvs.py/obo/obo/ontology/anatomy/gross_anatomy/animal_gross_anatomy/mouse/MA.ontology?rev=1.1&amp;view=markup" xsd:string

[Instance]
id: mged:Affymetrix_DAT
instance_of: mged:ImageFormat
property_value: mged:unique_identifier "MO_786" xsd:string
property_value: rdfs:comment "A proprietary image data format that is lossless and containing one channel of data." xsd:string

[Instance]
id: mged:Affymetrix_average_difference
instance_of: mged:DerivedBioAssayType
property_value: mged:unique_identifier "MO_649" xsd:string
property_value: rdfs:comment "the method used by Affymetrix to obtain mean signal intensity from a group  of related Features.  This involves calculation of the overall sum of perfect match minus  mismatch pairs divided by the number of pairs." xsd:string

[Instance]
id: mged:BAC
instance_of: mged:DeprecatedTerms
property_value: mged:deprecated_from_version mged:version_1.2.0
property_value: mged:has_reason_for_deprecation mged:deleted_term
property_value: mged:deprecation_replacement_term mged:PhysicalBioSequenceType
property_value: mged:deprecation_old_parent mged:PhysicalBioSequenceType
property_value: rdfs:comment "sequence from a bacterial artificial chromosome\nexact synonym: bacterial artificial chromosome" xsd:string
property_value: mged:deprecation_in_version "1.2.0" xsd:string
property_value: mged:synonym "bacterial artificial chromosome" xsd:string
property_value: mged:deprecation_reason "deleted_term" xsd:string
property_value: mged:unique_identifier "MO_985" xsd:string

[Instance]
id: mged:CABRI_Bacteria_and_Archaea_Strains
instance_of: mged:StrainOrLineDatabase
property_value: mged:has_human_readable_URI "http://www.cabri.org/HyperCat/bact/all_A.htm" xsd:string
property_value: rdfs:comment "List of CABRI bacteria and archaea strains sorted by genus and species. It includes more than 40,000 resources that are available from seven European collections participating in the CABRI (Common Access to Biological Resources and Information) initiative (see http://www.cabri.org/ ). Detailed descriptions can be reached from the list and strains of interest can be requested." xsd:string
property_value: mged:unique_identifier "MO_1008" xsd:string

[Instance]
id: mged:CABRI_Filamentous_Fungi_Strains
instance_of: mged:StrainOrLineDatabase
property_value: rdfs:comment "List of CABRI filamentous fungi strains sorted by genus and species. It includes more than 30,000 resources that are available from five European collections participating in the CABRI (Common Access to Biological Resources and Information) initiative (see http://www.cabri.org/ ). Detailed descriptions can be reached from the list and strains of interest can be requested." xsd:string
property_value: mged:unique_identifier "MO_1009" xsd:string
property_value: mged:has_human_readable_URI "http://www.cabri.org/HyperCat/fun/all_A.htm" xsd:string

[Instance]
id: mged:CABRI_HLA_typed_B_Cell_lines
instance_of: mged:CellLineDatabase
property_value: mged:has_human_readable_URI "http://www.cabri.org/HyperCat/cells/hla.htm" xsd:string
property_value: rdfs:comment "List of CABRI HLA typed B cell lines sorted by name. It includes 238 resources that are available from a European collection participating in the CABRI (Common Access to Biological Resources\n and Information) initiative (see http://www.cabri.org/ ). Detailed \ndescriptions can be reached from the list and cell lines of interest can be requested." xsd:string
property_value: mged:unique_identifier "MO_1005" xsd:string

[Instance]
id: mged:CABRI_Human_and_Animal_Cell_lines
instance_of: mged:CellLineDatabase
property_value: mged:unique_identifier "MO_536" xsd:string
property_value: mged:has_human_readable_URI "http://www.cabri.org/HyperCat/cells/all.htm" xsd:string
property_value: rdfs:comment "Database entry from CABRI, a database listing sources such as cell lines, bacteria, plasmids etc." xsd:string

[Instance]
id: mged:CABRI_Hybridomas
instance_of: mged:CellLineDatabase
property_value: mged:unique_identifier "MO_1006" xsd:string
property_value: rdfs:comment "List of CABRI hybridomas sorted by name. It includes 397 resources that are available from European collections participating in the CABRI (Common Access to Biological Resources and Information) initiative (see http://www.cabri.org/ ). Detailed descriptions can be reached from the list and cell lines of interest can be requested." xsd:string
property_value: mged:has_human_readable_URI "http://www.cabri.org/HyperCat/cells/hybrid.htm" xsd:string

[Instance]
id: mged:CABRI_Yeasts_Strains
instance_of: mged:StrainOrLineDatabase
property_value: rdfs:comment "List of CABRI yeasts strains sorted by genus and species. It includes more than 30,000 resources that are available from four European collections participating in the CABRI (Common Access to Biological Resources and Information) initiative (see http://www.cabri.org/ ). Detailed descriptions can be reached from the list and strains of interest can be requested." xsd:string
property_value: mged:unique_identifier "MO_1010" xsd:string
property_value: mged:has_human_readable_URI "http://www.cabri.org/HyperCat/yeast/all_A.htm" xsd:string

[Instance]
id: mged:CBIL_CV
instance_of: mged:CellTypeDatabase
property_value: mged:has_human_readable_URI "http://www.cbil.upenn.edu/anatomy.php3" xsd:string
property_value: rdfs:comment "a controlled vocabulary provided by CBIL" xsd:string
property_value: mged:unique_identifier "MO_886" xsd:string

[Instance]
id: mged:CBIL_CV
instance_of: mged:CellTypeDatabase
property_value: mged:has_human_readable_URI "http://www.cbil.upenn.edu/anatomy.php3" xsd:string
property_value: rdfs:comment "a controlled vocabulary provided by CBIL" xsd:string
property_value: mged:unique_identifier "MO_886" xsd:string

[Instance]
id: mged:CBIL_CV
instance_of: mged:CellTypeDatabase
property_value: mged:has_human_readable_URI "http://www.cbil.upenn.edu/anatomy.php3" xsd:string
property_value: rdfs:comment "a controlled vocabulary provided by CBIL" xsd:string
property_value: mged:unique_identifier "MO_886" xsd:string

[Instance]
id: mged:CLDB_Human_and_Animal_Cell_Line
instance_of: mged:CellLineDatabase
property_value: mged:has_human_readable_URI __file:///Users/cjm/obo-utils/obo-all/mged/mged.owl#__Description201
property_value: mged:unique_identifier "MO_1007" xsd:string
property_value: rdfs:comment "List of cell lines available in the Cell Line Database (CLDB), that includes more than 4,000 resources from many European collections and Italian laboratories. Indexes are given by species/strain, pathology, tumour, tissue/organ, and transforming agent." xsd:string

[Instance]
id: mged:CellML
instance_of: mged:OrganismPartDatabase
property_value: mged:has_human_readable_URI "http://portal.bioengineering.elyt.ods.org/ontology/" xsd:string
property_value: mged:unique_identifier "MO_967" xsd:string
property_value: rdfs:comment "Ontology describing anatomical and physiological relationships. " xsd:string

[Instance]
id: mged:ChEBI
instance_of: mged:CompoundDatabase
property_value: mged:unique_identifier "MO_857" xsd:string
property_value: rdfs:comment "A freely available dictionary of small molecular entities. The term molecular entity encompasses any constitutionally or isotopically distinct atom, molecule, ion, ion pair, radical, radical ion, complex, conformer, etc., identifiable as a separately distinguishable entity. The molecular entities in question are either products of nature or synthetic products used to intervene in the processes of living organisms." xsd:string
property_value: mged:has_human_readable_URI "http://www.ebi.ac.uk/chebi" xsd:string

[Instance]
id: mged:ChemID
instance_of: mged:CompoundDatabase
property_value: rdfs:comment "Database entry from the ChemIDplus database which stores information on the structure, identifiers etc for compounds." xsd:string
property_value: mged:unique_identifier "MO_426" xsd:string
property_value: mged:has_human_readable_URI "http://chem.sis.nlm.nih.gov/chemidplus" xsd:string

[Instance]
id: mged:Ci
instance_of: mged:RadiationUnit
property_value: rdfs:comment "Curie. Unit of the rate of radioactive decay, i.e., the activity of that quantity of radioactive material in which the number of disintegrations per second is 3.7E10. 1 Ci = 3.75 x1010 atom disintegrations per second (dps). " xsd:string
property_value: mged:unique_identifier "MO_642" xsd:string

[Instance]
id: mged:Cy3
instance_of: mged:LabelCompound
property_value: rdfs:comment "fluorophore used for labeling/detection purposes" xsd:string
property_value: mged:unique_identifier "MO_739" xsd:string

[Instance]
id: mged:Cy5
instance_of: mged:LabelCompound
property_value: mged:unique_identifier "MO_646" xsd:string
property_value: rdfs:comment "fluorophore used for labeling/detection purposes" xsd:string

[Instance]
id: mged:DNA
instance_of: mged:PolymerType
property_value: mged:unique_identifier "MO_945" xsd:string
property_value: rdfs:comment "Deoxyribonucleic acid." xsd:string

[Instance]
id: mged:DNA
instance_of: mged:PolymerType
property_value: mged:unique_identifier "MO_945" xsd:string
property_value: rdfs:comment "Deoxyribonucleic acid." xsd:string

[Instance]
id: mged:DNA_sequencer
instance_of: mged:HardwareType
property_value: mged:unique_identifier "MO_676" xsd:string
property_value: rdfs:comment " An instrument that produces DNA sequences." xsd:string

[Instance]
id: mged:EMAP
instance_of: mged:DevelopmentalStageDatabase
property_value: mged:unique_identifier "MO_357" xsd:string
property_value: mged:has_human_readable_URI "http://genex.hgu.mrc.ac.uk" xsd:string
property_value: rdfs:comment "The Edinburgh Mouse Atlas Project (EMAP) ontology of mouse developmental anatomy covers the 26 developmental stages (Theiler Stages) from fertilization to birth." xsd:string

[Instance]
id: mged:EST
instance_of: mged:DeprecatedTerms
property_value: mged:deprecation_replacement_term mged:TheoreticalBioSequenceType
property_value: mged:deprecation_old_parent mged:TheoreticalBioSequenceType
property_value: mged:has_reason_for_deprecation mged:deleted_term
property_value: mged:deprecated_from_version mged:version_1.2.0
property_value: rdfs:comment "Sequence derived from expressed sequence tag. EST's are likely to be partial, single read and low quality sequences." xsd:string
property_value: mged:deprecation_in_version "1.2.0" xsd:string
property_value: mged:deprecation_reason "deleted_term" xsd:string
property_value: mged:unique_identifier "MO_412" xsd:string

[Instance]
id: mged:Euclidean_distance
instance_of: mged:NodeValueType
property_value: mged:unique_identifier "MO_932" xsd:string
property_value: rdfs:comment "The straight line distance between two points. In n dimensions, the Euclidean distance between two points p and q is square root of (sum (pi-qi)2) where pi (or qi) is the i-th coordinate of p (or q)." xsd:string

[Instance]
id: mged:F
instance_of: mged:Sex
property_value: rdfs:comment "mating type indicating the presence of F plasmid in a bacterial cell" xsd:string
property_value: mged:unique_identifier "MO_717" xsd:string

[Instance]
id: mged:FMA
instance_of: mged:OrganismPartDatabase
property_value: rdfs:comment "The Foundational Model of Anatomy (FMA) is  concerned with the representation of concepts and relationships necessary for the symbolic modeling of the structure of the human body." xsd:string
property_value: mged:unique_identifier "MO_468" xsd:string
property_value: mged:has_human_readable_URI "http://sig.biostr.wahington.edu/projects/fm/" xsd:string

[Instance]
id: mged:F_minus
instance_of: mged:Sex
property_value: mged:unique_identifier "MO_682" xsd:string
property_value: rdfs:comment "mating type indicating the absence of F plasmid in a bacterial cell\n " xsd:string

[Instance]
id: mged:FlyBase_developmental_stage_database
instance_of: mged:DevelopmentalStageDatabase
property_value: mged:unique_identifier "MO_865" xsd:string
property_value: mged:has_machine_readable_URI "http://cvs.sourceforge.net/viewcvs.py/*checkout*/obo/obo/ontology/developmental/animal_development/fly/fly_development.ontology?content-type=text/plain&amp;rev=1.1" xsd:string
property_value: rdfs:comment "uri for FlyBase developmental stage terms" xsd:string

[Instance]
id: mged:FlyBase_organism_part_database
instance_of: mged:OrganismPartDatabase
property_value: mged:has_machine_readable_URI "http://cvs.sourceforge.net/cgi-bin/viewcvs.cgi/obo/obo/ontology/anatomy/gross_anatomy/animal_gross_anatomy/fly/" xsd:string
property_value: rdfs:comment "curated database containing information on Drosophila genes, alleles etc" xsd:string
property_value: mged:unique_identifier "MO_504" xsd:string

[Instance]
id: mged:GIF
instance_of: mged:ImageFormat
property_value: rdfs:comment "Graphics Interchange Format , a common image data format containing RGB data compressed with fairly high data loss." xsd:string
property_value: mged:unique_identifier "MO_963" xsd:string

[Instance]
id: mged:GRAMENE
instance_of: mged:StrainOrLineDatabase
property_value: mged:has_human_readable_URI "http://www.gramene.org/" xsd:string
property_value: mged:unique_identifier "MO_678" xsd:string
property_value: rdfs:comment "A Comparative Mapping Resource for Grains." xsd:string

[Instance]
id: mged:HUMAT
instance_of: mged:DevelopmentalStageDatabase
property_value: mged:unique_identifier "MO_844" xsd:string
property_value: rdfs:comment "Ontology of human developmental anatomy for Carnegie stages 1-20. " xsd:string
property_value: mged:has_machine_readable_URI "http://obo.sourceforge.net/list.shtml" xsd:string

[Instance]
id: mged:Hfr
instance_of: mged:DeprecatedTerms
property_value: mged:has_reason_for_deprecation mged:deleted_term
property_value: mged:deprecated_from_version mged:version_1.1.7
property_value: mged:deprecation_replacement_term mged:Sex
property_value: mged:deprecation_old_parent mged:Sex
property_value: mged:deprecation_in_version "1.1.7" xsd:string
property_value: mged:unique_identifier "MO_419" xsd:string
property_value: mged:deprecation_reason "deleted_term" xsd:string
property_value: rdfs:comment "High frequency recombinant, mating type that indicates that the F plasmid has integrated into the chromosome" xsd:string

[Instance]
id: mged:ICD-9-CM
instance_of: mged:DiseaseStateDatabase
property_value: mged:has_machine_readable_URI "ftp://ftp.cdc.gov/pub/Health_Statistics/NCHS/Publications/ICD9-CM/2002" xsd:string
property_value: mged:unique_identifier "MO_654" xsd:string
property_value: rdfs:comment "Database entry from ICD 9 2001, international classification of diseases 9, clinical modification 2001." xsd:string

[Instance]
id: mged:IU
instance_of: mged:QuantityUnit
property_value: mged:synonym "International unit" xsd:string
property_value: mged:synonym "UI" xsd:string
property_value: rdfs:comment "The International unit is a unit of measurement for the amount of a substance, based on measured biological activity. It is used for vitamins, hormones, some drugs, vaccines, blood products and similar biologically active substances. The precise definition of one IU differs from substance to substance and is established by international agreement and is based on a reference provided by the Committee on Biological Standardization of the World Health Organization." xsd:string
property_value: mged:unique_identifier "1011" xsd:string

[Instance]
id: mged:IUPAC_Clinical_Chemistry_Guidelines
instance_of: mged:TestTypeDatabase
property_value: mged:has_human_readable_URI "http://www.iupac.org/publications/pac/2000/205/205olesen.html" xsd:string
property_value: mged:unique_identifier "MO_593" xsd:string
property_value: rdfs:comment " A resource of vocabularies for describing clinical tests, e.g. blood chemistry." xsd:string

[Instance]
id: mged:JAX_mouse_strains
instance_of: mged:StrainOrLineDatabase
property_value: rdfs:comment "Database entry from the resource at The Jackson Laboratory which has details of approved mouse strain nomenclature." xsd:string
property_value: mged:has_human_readable_URI "http://www.informatics.jax.org/external/festing/mouse/STRAINS.shtml" xsd:string
property_value: mged:unique_identifier "MO_369" xsd:string

[Instance]
id: mged:JPEG
instance_of: mged:ImageFormat
property_value: mged:unique_identifier "MO_746" xsd:string
property_value: rdfs:comment "Joint Photographic Experts Group format, a common image data format containing grayscale or RGB data compressed with little to high data loss." xsd:string

[Instance]
id: mged:K
instance_of: mged:TemperatureUnit
property_value: rdfs:comment "Kelvin, unit of temperature" xsd:string
property_value: mged:unique_identifier "MO_614" xsd:string

[Instance]
id: mged:L
instance_of: mged:VolumeUnit
property_value: mged:unique_identifier "MO_444" xsd:string
property_value: rdfs:comment "liter, unit of volume" xsd:string

[Instance]
id: mged:LOINC
instance_of: mged:TestTypeDatabase
property_value: mged:unique_identifier "MO_731" xsd:string
property_value: mged:has_machine_readable_URI "http://www.loinc.org/download" xsd:string
property_value: rdfs:comment "Database resource for universal identifiers for laboratory and other clinical observations" xsd:string

[Instance]
id: mged:M
instance_of: mged:ConcentrationUnit
property_value: rdfs:comment "Mole per liter or molarity, concentration unit" xsd:string
property_value: mged:unique_identifier "MO_936" xsd:string

[Instance]
id: mged:MAD_stage
instance_of: mged:DevelopmentalStageDatabase
property_value: rdfs:comment "database entry from mouse anatomical dictionary for developmental stage term" xsd:string
property_value: mged:unique_identifier "MO_693" xsd:string
property_value: mged:has_human_readable_URI "http://www.informatics.jax.org/mgihome/GXD/AD/" xsd:string

[Instance]
id: mged:MAD_stage
instance_of: mged:DevelopmentalStageDatabase
property_value: rdfs:comment "database entry from mouse anatomical dictionary for developmental stage term" xsd:string
property_value: mged:unique_identifier "MO_693" xsd:string
property_value: mged:has_human_readable_URI "http://www.informatics.jax.org/mgihome/GXD/AD/" xsd:string

[Instance]
id: mged:MAD_stage
instance_of: mged:DevelopmentalStageDatabase
property_value: rdfs:comment "database entry from mouse anatomical dictionary for developmental stage term" xsd:string
property_value: mged:unique_identifier "MO_693" xsd:string
property_value: mged:has_human_readable_URI "http://www.informatics.jax.org/mgihome/GXD/AD/" xsd:string

[Instance]
id: mged:MAS4_average_difference
instance_of: mged:DerivedBioAssayType
property_value: mged:unique_identifier "MO_782" xsd:string
property_value: rdfs:comment "A quantitative measure of the relative abundance of a transcript.  Used in the MAS4.0 Affymetrix software to obtain an averaged signal intensity from a group of related Features. This involves calculation of the overall sum of perfect match minus mismatch pairs divided by the number of pairs." xsd:string

[Instance]
id: mged:MAS5_signal
instance_of: mged:DerivedBioAssayType
property_value: mged:unique_identifier "MO_653" xsd:string
property_value: rdfs:comment "A quantitative measure of the relative abundance of a transcript. Used in the MAS5.0 Affymetrix software to obtain a smoothed signal intensity from a group of related Features." xsd:string

[Instance]
id: mged:MAS5_signal_log_ratio
instance_of: mged:DerivedBioAssayType
property_value: rdfs:comment "The difference in expression level for a transcript between data from two arrays, expressed as the log2ratio. A signal log ratio of 1 is the same as a Fold Change of 2." xsd:string
property_value: mged:unique_identifier "MO_938" xsd:string

[Instance]
id: mged:MBEI
instance_of: mged:DerivedBioAssayType
property_value: rdfs:comment "Multiarray-Based Expression Index (MBEI).  A quantitative measure of the relative abundance of a transcript.  MBEI is used in the dChip software to obtain a signal intensity from a group of related Features on an Affymetrix array." xsd:string
property_value: mged:unique_identifier "MO_756" xsd:string

[Instance]
id: mged:MESH
instance_of: mged:DiseaseStateDatabase
property_value: rdfs:comment "database entry from MESH, medical subject headings vocabulary resource" xsd:string
property_value: mged:unique_identifier "MO_580" xsd:string
property_value: mged:has_human_readable_URI "http://www.nlm.nih.gov/mesh/filelist.html" xsd:string

[Instance]
id: mged:MTB_Database
instance_of: mged:DiseaseStateDatabase
property_value: mged:has_human_readable_URI "http://tumor.informatics.jax.org" xsd:string
property_value: mged:unique_identifier "MO_942" xsd:string
property_value: rdfs:comment "Database entry from the mouse tumor biology database, a resource for nomenclature of mouse tumors." xsd:string

[Instance]
id: mged:Mammalian_Phenotype_Ontology
instance_of: mged:ObservationDatabase
property_value: mged:unique_identifier "MO_704" xsd:string
property_value: rdfs:comment "A community effort to provide standard terms for annotating phenotypic data." xsd:string
property_value: mged:has_human_readable_URI "http://www.informatics.jax.org/searches/Phat.cgi?id=MP:0000001" xsd:string

[Instance]
id: mged:NASC
instance_of: mged:StrainOrLineDatabase
property_value: mged:has_human_readable_URI "http://arabidopsis.info/catalogue.html" xsd:string
property_value: rdfs:comment "The Nottingham Arabidopsis Stock Centre (NASC). Provides seed and information resources to the International Arabidopsis Genome Programme and the wider research community." xsd:string
property_value: mged:unique_identifier "MO_379" xsd:string

[Instance]
id: mged:NCBI_taxonomy
instance_of: mged:StrainOrLineDatabase
property_value: mged:has_human_readable_URI "http://www.ncbi.nlm.nih.gov/Taxonomy/taxonomyhome.html/" xsd:string
property_value: mged:unique_identifier "MO_773" xsd:string
property_value: rdfs:comment "identifier for  a taxon provided by the NCBI taxonomy database" xsd:string

[Instance]
id: mged:NCBI_taxonomy
instance_of: mged:StrainOrLineDatabase
property_value: mged:has_human_readable_URI "http://www.ncbi.nlm.nih.gov/Taxonomy/taxonomyhome.html/" xsd:string
property_value: mged:unique_identifier "MO_773" xsd:string
property_value: rdfs:comment "identifier for  a taxon provided by the NCBI taxonomy database" xsd:string

[Instance]
id: mged:NCI_Thesaurus
instance_of: mged:DeprecatedTerms
property_value: mged:deprecation_old_parent mged:CellLineDatabase
property_value: mged:deprecation_old_parent mged:TumorGradingDatabase
property_value: mged:split_to_term mged:NCI_disease_state_database
property_value: mged:split_to_term mged:NCI_compound_database
property_value: mged:deprecation_old_parent mged:StrainOrLineDatabase
property_value: mged:split_to_term mged:NCI_cell_type_database
property_value: mged:deprecation_old_parent mged:CompoundDatabase
property_value: mged:split_to_term mged:NCI_organism_part_database
property_value: mged:has_reason_for_deprecation mged:split_term
property_value: mged:deprecation_old_parent mged:OrganismPartDatabase
property_value: mged:deprecation_old_parent mged:GeographicLocationDatabase
property_value: mged:split_to_term mged:NCI_strain_or_line_database
property_value: mged:deprecation_old_parent mged:TargetedCellTypeDatabase
property_value: mged:deprecation_old_parent mged:ClinicalTreatmentDatabase
property_value: mged:deprecation_old_parent mged:DiseaseStateDatabase
property_value: mged:split_to_term mged:NCI_tumor_grading_database
property_value: mged:deprecated_from_version mged:version_1.1.7
property_value: mged:split_to_term mged:NCI_targeted_cell_type_database
property_value: mged:split_to_term mged:NCI_geographic_location_database
property_value: mged:has_human_readable_URI "http://nciterms.nci.nih.gov" xsd:string
property_value: mged:unique_identifier "MO_456" xsd:string
property_value: mged:deprecation_in_version "1.1.7" xsd:string
property_value: mged:deprecation_reason "split_term" xsd:string
property_value: rdfs:comment "A description logic namespace that contains controlled terminology used at NCI." xsd:string

[Instance]
id: mged:NCI_cell_type_database
instance_of: mged:CellTypeDatabase
property_value: mged:has_human_readable_URI "http://nciterms.nci.nih.gov/NCIBrowser/ConceptReport.jsp?dictionary=NCI_Thesaurus&amp;code=12596" xsd:string
property_value: rdfs:comment "a controlled vocabulary of cell types" xsd:string
property_value: mged:unique_identifier "MO_687" xsd:string

[Instance]
id: mged:NCI_compound_database
instance_of: mged:CompoundDatabase
property_value: rdfs:comment "a controlled vocabulary for compounds" xsd:string
property_value: mged:has_human_readable_URI "http://nciterm.nci.nih.gov:80/NCIBrowser/ConceptReport.jsp?dictionary=NCI_Thesaurus&amp;code=C1908" xsd:string
property_value: mged:unique_identifier "MO_376" xsd:string

[Instance]
id: mged:NCI_disease_staging_database
instance_of: mged:DiseaseStagingDatabase
property_value: rdfs:comment "a controlled vocabulary for disease stages" xsd:string
property_value: mged:unique_identifier "MO_422" xsd:string
property_value: mged:has_human_readable_URI "http://nciterms.nci.nih.gov:80/NCIBrowser/ConceptReport.jsp?dictionary=NCI_Thesaurus&amp;code=C28108" xsd:string

[Instance]
id: mged:NCI_disease_state_database
instance_of: mged:DiseaseStateDatabase
property_value: mged:unique_identifier "MO_790" xsd:string
property_value: mged:has_human_readable_URI "http://nciterms.nci.nih.gov/NCIBrowser/ConceptReport.jsp?dictionary=NCI_Thesaurus&amp;code=C7057" xsd:string
property_value: rdfs:comment "a controlled vocabulary for disease states" xsd:string

[Instance]
id: mged:NCI_geographic_location_database
instance_of: mged:GeographicLocationDatabase
property_value: mged:unique_identifier "MO_630" xsd:string
property_value: rdfs:comment "a controlled vocabulary for geographic locations" xsd:string
property_value: mged:has_human_readable_URI "http://nciterms.nci.nih.gov/NCIBrowser/ConceptReport.jsp?dictionary=NCI_Thesaurus&amp;code=C16632" xsd:string

[Instance]
id: mged:NCI_histology_database
instance_of: mged:HistologyDatabase
property_value: rdfs:comment "a controlled vocabulary for histology" xsd:string
property_value: mged:unique_identifier "MO_537" xsd:string
property_value: mged:has_human_readable_URI "http://nciterms.nci.nih.gov/NCIBrowser/ConceptReport.jsp?dictionary=NCI_Thesaurus&amp;code=C4741" xsd:string

[Instance]
id: mged:NCI_organism_part_database
instance_of: mged:OrganismPartDatabase
property_value: rdfs:comment "a controlled vocabulary of organism parts" xsd:string
property_value: mged:unique_identifier "MO_690" xsd:string
property_value: mged:has_human_readable_URI "http://nciterms.nci.nih.gov:80/NCIBrowser/ConceptReport.jsp?dictionary=NCI_Thesaurus&amp;code=C13007" xsd:string

[Instance]
id: mged:NCI_strain_or_line_database
instance_of: mged:StrainOrLineDatabase
property_value: mged:unique_identifier "MO_397" xsd:string
property_value: rdfs:comment "a controlled vocabulary for strains or lines" xsd:string
property_value: mged:has_human_readable_URI "http://nciterms.nci.nih.gov/NCIBrowser/ConceptReport.jsp?dictionary=NCI_Thesaurus&amp;code=C16403" xsd:string

[Instance]
id: mged:NCI_targeted_cell_type_database
instance_of: mged:TargetedCellTypeDatabase
property_value: rdfs:comment "a controlled vocabulary of targeted cell types" xsd:string
property_value: mged:unique_identifier "MO_351" xsd:string
property_value: mged:has_human_readable_URI "http://nciterms.nci.nih.gov:80/NCIBrowser/ConceptReport.jsp?dictionary=NCI_Thesaurus&amp;code=C12596" xsd:string

[Instance]
id: mged:NCI_tumor_grading_database
instance_of: mged:TumorGradingDatabase
property_value: mged:has_human_readable_URI "http://nciterms.nci.nih.gov/NCIBrowser/ConceptReport.jsp?dictionary=NCI_Thesaurus&amp;code=C28076" xsd:string
property_value: rdfs:comment "a controlled vocabulary of tumor grading terms" xsd:string
property_value: mged:unique_identifier "MO_819" xsd:string

[Instance]
id: mged:ORF
instance_of: mged:DeprecatedTerms
property_value: mged:deprecation_old_parent mged:TheoreticalBioSequenceType
property_value: mged:deprecation_replacement_term mged:TheoreticalBioSequenceType
property_value: mged:deprecated_from_version mged:version_1.2.0
property_value: mged:has_reason_for_deprecation mged:deleted_term
property_value: rdfs:comment "sequence which represents an open reading frame, a series of codon triplets deduced from a DNA sequence, that contain a start and a stop codon." xsd:string
property_value: mged:unique_identifier "MO_413" xsd:string
property_value: mged:deprecation_in_version "1.2.0" xsd:string
property_value: mged:deprecation_reason "deleted_term" xsd:string

[Instance]
id: mged:PAC
instance_of: mged:DeprecatedTerms
property_value: mged:deprecation_old_parent mged:PhysicalBioSequenceType
property_value: mged:deprecation_replacement_term mged:PhysicalBioSequenceType
property_value: mged:deprecated_from_version mged:version_1.2.0
property_value: mged:has_reason_for_deprecation mged:deleted_term
property_value: mged:deprecation_in_version "1.2.0" xsd:string
property_value: mged:deprecation_reason "deleted_term" xsd:string
property_value: mged:unique_identifier "MO_909" xsd:string
property_value: rdfs:comment "sequence from a P1 artificial chromosome" xsd:string

[Instance]
id: mged:PCR
instance_of: mged:DesignElement
property_value: rdfs:comment "Polymerase chain reaction.  An element generated using this procedure." xsd:string
property_value: mged:unique_identifier "MO_915" xsd:string

[Instance]
id: mged:PCR_amplicon
instance_of: mged:PhysicalBioSequenceType
property_value: mged:deprecated_from_version mged:version_1.2.0
property_value: mged:has_reason_for_deprecation mged:deleted_term
property_value: mged:unique_identifier "MO_450" xsd:string
property_value: rdfs:comment "BioSequence generated by means of polymerase chain reaction" xsd:string

[Instance]
id: mged:PCR_amplification
instance_of: mged:ExperimentalProtocolType
property_value: mged:unique_identifier "MO_358" xsd:string
property_value: rdfs:comment "Amplification of nucleic acid sequence by use of the polymerase chain reaction whereby the number of templates grows geometrically with each cycle. " xsd:string

[Instance]
id: mged:PCR_amplification
instance_of: mged:ExperimentalProtocolType
property_value: mged:unique_identifier "MO_358" xsd:string
property_value: rdfs:comment "Amplification of nucleic acid sequence by use of the polymerase chain reaction whereby the number of templates grows geometrically with each cycle. " xsd:string

[Instance]
id: mged:PCR_fail
instance_of: mged:FailType
property_value: rdfs:comment "PCR where no products of any kind appear in gel-separated reaction products." xsd:string
property_value: mged:unique_identifier "MO_667" xsd:string

[Instance]
id: mged:PCR_primer
instance_of: mged:DeprecatedTerms
property_value: mged:deprecation_replacement_term mged:PhysicalBioSequenceType
property_value: mged:deprecation_old_parent mged:PhysicalBioSequenceType
property_value: mged:has_reason_for_deprecation mged:deleted_term
property_value: mged:deprecated_from_version mged:version_1.2.0
property_value: mged:deprecation_in_version "1.2.0" xsd:string
property_value: mged:unique_identifier "MO_651" xsd:string
property_value: mged:deprecation_reason "deleted_term" xsd:string
property_value: rdfs:comment "single oligo used for polymerase chain reaction direction unspecified" xsd:string

[Instance]
id: mged:PCR_primer_forward
instance_of: mged:DeprecatedTerms
property_value: mged:has_reason_for_deprecation mged:deleted_term
property_value: mged:deprecation_replacement_term mged:PhysicalBioSequenceType
property_value: mged:deprecation_old_parent mged:PhysicalBioSequenceType
property_value: mged:deprecated_from_version mged:version_1.2.0
property_value: mged:unique_identifier "MO_381" xsd:string
property_value: mged:deprecation_in_version "1.2.0" xsd:string
property_value: rdfs:comment "single stranded oligo used for polymerase chain reaction" xsd:string
property_value: mged:deprecation_reason "deleted_term" xsd:string

[Instance]
id: mged:PCR_primer_reverse
instance_of: mged:DeprecatedTerms
property_value: mged:deprecation_old_parent mged:PhysicalBioSequenceType
property_value: mged:deprecation_replacement_term mged:PhysicalBioSequenceType
property_value: mged:deprecated_from_version mged:version_1.2.0
property_value: mged:has_reason_for_deprecation mged:deleted_term
property_value: mged:deprecation_reason "deleted_term" xsd:string
property_value: rdfs:comment "single stranded oligo used for polymerase chain reaction" xsd:string
property_value: mged:deprecation_in_version "1.2.0" xsd:string
property_value: mged:unique_identifier "MO_640" xsd:string

[Instance]
id: mged:PCR_questionable
instance_of: mged:FailType
property_value: mged:unique_identifier "MO_620" xsd:string
property_value: rdfs:comment "PCR with multiple bands, or smear, in gel-separated reaction products" xsd:string

[Instance]
id: mged:PNG
instance_of: mged:ImageFormat
property_value: rdfs:comment "Portable Network Graphic, a lossless image data format." xsd:string
property_value: mged:unique_identifier "MO_1001" xsd:string

[Instance]
id: mged:Pathbase
instance_of: mged:HistologyDatabase
property_value: mged:unique_identifier "MO_972" xsd:string
property_value: mged:has_human_readable_URI "http://eulep.anat.cam.ac.uk/Search_Pathbase/index.php" xsd:string
property_value: rdfs:comment "database of histopathology photomicrographs and macroscopic images derived from mutant or genetically manipulated mice" xsd:string

[Instance]
id: mged:Pearson_correlation
instance_of: mged:NodeValueType
property_value: rdfs:comment "The Pearson correlation is defined as the covariance of two data series divided by the product of their standard deviations." xsd:string
property_value: mged:unique_identifier "MO_632" xsd:string

[Instance]
id: mged:R
instance_of: mged:RadiationUnit
property_value: mged:unique_identifier "MO_725" xsd:string
property_value: rdfs:comment "Roentgen. Unit of exposure to gamma or x-rays in the air. 1 R= 2.58E-4 coulombs per kg." xsd:string

[Instance]
id: mged:RMA
instance_of: mged:DerivedBioAssayType
property_value: rdfs:comment "Robust Multiarray Average.  A quantitative measure of the relative abundance of a transcript.  RMA is a summary measure of related &#212;perfect match&#213; Features on an Affymetrix array. The values are background-adjusted, normalized and log-transformed values." xsd:string
property_value: mged:unique_identifier "MO_987" xsd:string

[Instance]
id: mged:RNA
instance_of: mged:PolymerType
property_value: mged:unique_identifier "MO_594" xsd:string
property_value: rdfs:comment "Ribonucleic acid." xsd:string

[Instance]
id: mged:RNA_stability_design
instance_of: mged:BioMolecularAnnotation
property_value: mged:unique_identifier "MO_553" xsd:string
property_value: rdfs:comment "A RNA stability experiment design type examines the stability and/or decay of RNA transcripts." xsd:string

[Instance]
id: mged:Rad
instance_of: mged:RadiationUnit
property_value: mged:unique_identifier "MO_585" xsd:string
property_value: rdfs:comment "Radiation absorbed dose. Unit of energy absorbed per unit mass as a result of exposure to radiation. 1 rad = Absorption of 100 ergs per gram of material = 0.01Gy." xsd:string

[Instance]
id: mged:Rem
instance_of: mged:RadiationUnit
property_value: rdfs:comment "Roentgen Equivalent Man. Unit of dose equivalent, i.e., the measure of potential biological damage caused by exposure and absorption of radiation. Rem = absorbed dose (rad) x quality factor (Q). Q is unique to the type of incident radiation." xsd:string
property_value: mged:unique_identifier "MO_908" xsd:string

[Instance]
id: mged:SequenceOntology
instance_of: mged:SequenceOntologyDatabase
property_value: mged:unique_identifier "MO_724" xsd:string
property_value: rdfs:comment "The Sequence Ontology is a set of terms used to describe features on a nucleotide or protein sequence." xsd:string
property_value: mged:has_machine_readable_URI "http://song.sourceforge.net/" xsd:string

[Instance]
id: mged:Spearmans_rank_correlation
instance_of: mged:NodeValueType
property_value: mged:unique_identifier "MO_552" xsd:string
property_value: rdfs:comment "Computed as the ordinary Pearson correlation coefficient between two groups of rankings." xsd:string

[Instance]
id: mged:TAIR
instance_of: mged:StrainOrLineDatabase
property_value: rdfs:comment "The Arabidopsis Information Resource." xsd:string
property_value: mged:unique_identifier "MO_660" xsd:string
property_value: mged:has_human_readable_URI "http://www.arabidopsis.org/servlets/Search?action=new_search&amp;type=ecotype" xsd:string

[Instance]
id: mged:TAIR
instance_of: mged:StrainOrLineDatabase
property_value: rdfs:comment "The Arabidopsis Information Resource." xsd:string
property_value: mged:unique_identifier "MO_660" xsd:string
property_value: mged:has_human_readable_URI "http://www.arabidopsis.org/servlets/Search?action=new_search&amp;type=ecotype" xsd:string

[Instance]
id: mged:TAIR_arabidopsis_anatomy_ontology
instance_of: mged:OrganismPartDatabase
property_value: rdfs:comment "A structured controlled vocabulary for the anatomy of Arabidopsis." xsd:string
property_value: mged:unique_identifier "MO_809" xsd:string
property_value: mged:has_machine_readable_URI "http://cvs.sourceforge.net/viewcvs.py/obo/obo/ontology/anatomy/gross_anatomy/plant_gross_anatomy/Arabidopsis/Attic/arabidopsis_anatomy.ontology" xsd:string

[Instance]
id: mged:TAIR_arabidopsis_development_ontology
instance_of: mged:DevelopmentalStageDatabase
property_value: mged:has_machine_readable_URI "http://cvs.sourceforge.net/viewcvs.py/obo/obo/ontology/developmental/plant_development/Arabidopsis/temporal.tair?rev=1.21&amp;view=markup" xsd:string
property_value: rdfs:comment "An ontology of stages of growth and development of the model plant Arabidopsis thaliana." xsd:string
property_value: mged:unique_identifier "MO_919" xsd:string

[Instance]
id: mged:TDMS
instance_of: mged:OrganismPartDatabase
property_value: rdfs:comment "Toxicology Data Management System, a database resource for systems, organs, pathology, etc." xsd:string
property_value: mged:unique_identifier "MO_718" xsd:string
property_value: mged:has_human_readable_URI "http://hazel.niehs.nih.gov/user_spt/pct_terms.htm" xsd:string

[Instance]
id: mged:TDMS
instance_of: mged:OrganismPartDatabase
property_value: rdfs:comment "Toxicology Data Management System, a database resource for systems, organs, pathology, etc." xsd:string
property_value: mged:unique_identifier "MO_718" xsd:string
property_value: mged:has_human_readable_URI "http://hazel.niehs.nih.gov/user_spt/pct_terms.htm" xsd:string

[Instance]
id: mged:TDMS
instance_of: mged:OrganismPartDatabase
property_value: rdfs:comment "Toxicology Data Management System, a database resource for systems, organs, pathology, etc." xsd:string
property_value: mged:unique_identifier "MO_718" xsd:string
property_value: mged:has_human_readable_URI "http://hazel.niehs.nih.gov/user_spt/pct_terms.htm" xsd:string

[Instance]
id: mged:TDMS
instance_of: mged:OrganismPartDatabase
property_value: rdfs:comment "Toxicology Data Management System, a database resource for systems, organs, pathology, etc." xsd:string
property_value: mged:unique_identifier "MO_718" xsd:string
property_value: mged:has_human_readable_URI "http://hazel.niehs.nih.gov/user_spt/pct_terms.htm" xsd:string

[Instance]
id: mged:TIFF
instance_of: mged:ImageFormat
property_value: rdfs:comment "Tag Image File Format (TIFF) is a common format to describe and store raster image data  from scanners and other imaging devices. TIFFs may contain one or more channels and the data may be compressed using a lossless compression algorithm." xsd:string
property_value: mged:unique_identifier "MO_638" xsd:string

[Instance]
id: mged:UMLS
instance_of: mged:DiseaseStateDatabase
property_value: mged:unique_identifier "MO_947" xsd:string
property_value: mged:has_human_readable_URI "http://www.nlm.nih.gov/research/umls/" xsd:string
property_value: rdfs:comment "Database resource, unified medical language system, an ontology constructed by  merging several disparate ontologies, available from NIH." xsd:string

[Instance]
id: mged:U_per_L
instance_of: mged:ConcentrationUnit
property_value: rdfs:comment "units per liter" xsd:string
property_value: mged:unique_identifier "MO_875" xsd:string

[Instance]
id: mged:U_per_week
instance_of: mged:OtherUnit
property_value: rdfs:comment "units per week, e.g. the number of units of alcohol consumed over a period of 7 days" xsd:string
property_value: mged:unique_identifier "MO_388" xsd:string

[Instance]
id: mged:WebRENI
instance_of: mged:DiseaseStateDatabase
property_value: mged:unique_identifier "MO_737" xsd:string
property_value: mged:has_human_readable_URI "http://www.item.fraunhofer.de/reni/index/htm" xsd:string
property_value: rdfs:comment "database entry from WebReni A resource for rat and mouse unified nomenclature describing lesions" xsd:string

[Instance]
id: mged:YAC
instance_of: mged:DeprecatedTerms
property_value: mged:deprecation_old_parent mged:PhysicalBioSequenceType
property_value: mged:deprecated_from_version mged:version_1.2.0
property_value: mged:has_reason_for_deprecation mged:deleted_term
property_value: mged:deprecation_replacement_term mged:PhysicalBioSequenceType
property_value: mged:deprecation_reason "deleted_term" xsd:string
property_value: mged:unique_identifier "MO_794" xsd:string
property_value: mged:deprecation_in_version "1.2.0" xsd:string
property_value: rdfs:comment "sequence from yeast artificial chromosome" xsd:string

[Instance]
id: mged:_32P
instance_of: mged:LabelCompound
property_value: rdfs:comment "32 P, radioactive isotope of phosphorus used for labeling/detection purposes" xsd:string
property_value: mged:unique_identifier "MO_839" xsd:string

[Instance]
id: mged:_33P
instance_of: mged:LabelCompound
property_value: rdfs:comment "33 P, radioactive isotope of phosphorus, used for labeling/detection purposes." xsd:string
property_value: mged:unique_identifier "MO_427" xsd:string

[Instance]
id: mged:absolute
instance_of: mged:MeasurementType
property_value: mged:unique_identifier "MO_741" xsd:string
property_value: rdfs:comment "a measurement where the value is independent of other measurements" xsd:string

[Instance]
id: mged:acclimatization
instance_of: mged:ComplexAction
property_value: mged:unique_identifier "MO_776" xsd:string
property_value: rdfs:comment "The action of stabilizing an organism prior to treatment" xsd:string

[Instance]
id: mged:acclimatization
instance_of: mged:ComplexAction
property_value: mged:unique_identifier "MO_776" xsd:string
property_value: rdfs:comment "The action of stabilizing an organism prior to treatment" xsd:string

[Instance]
id: mged:acrossBioAssay_mean_and_coefficient_of_variation
instance_of: mged:DerivedBioAssayType
property_value: mged:unique_identifier "MO_840" xsd:string
property_value: rdfs:comment "The mean and coefficient of variation values resulting from computationally combining 2 or more sets of bioassay data." xsd:string

[Instance]
id: mged:acrossBioAssay_mean_and_p_values
instance_of: mged:DerivedBioAssayType
property_value: rdfs:comment "The mean and associated p-values resulting from computationally combining 2 or more sets of bioassay data." xsd:string
property_value: mged:unique_identifier "MO_671" xsd:string

[Instance]
id: mged:acrossBioAssay_mean_and_standard_deviation
instance_of: mged:DerivedBioAssayType
property_value: mged:unique_identifier "MO_946" xsd:string
property_value: rdfs:comment "The mean and standard deviation values resulting from computationally combining 2 or more sets of bioassay data." xsd:string

[Instance]
id: mged:acrossBioAssay_mean_and_variance
instance_of: mged:DerivedBioAssayType
property_value: rdfs:comment "The mean and variance values resulting from computationally combining 2 or more sets of bioassay data." xsd:string
property_value: mged:unique_identifier "MO_400" xsd:string

[Instance]
id: mged:across_bioassay_data_set_function
instance_of: mged:DataTransformationProtocolType
property_value: mged:unique_identifier "MO_606" xsd:string
property_value: rdfs:comment "A function applied to corresponding values coming from a set of compatible Measured/Derived bioassay data sets. Two Measured/Derived bioassay data sets are compatible if there is a natural one-to-one correspondence between them." xsd:string

[Instance]
id: mged:activity_units_per_ml
instance_of: mged:OtherUnit
property_value: mged:deprecated_from_version mged:version_1.3.1
property_value: mged:has_reason_for_deprecation mged:deleted_term
property_value: mged:unique_identifier "MO_870" xsd:string
property_value: rdfs:comment "Units of defined biological activity, e.g. cytokine stimulation, per ml." xsd:string

[Instance]
id: mged:ad_libitum
instance_of: mged:DeliveryMethod
property_value: mged:unique_identifier "MO_592" xsd:string
property_value: rdfs:comment "A delivery method for compounds/drugs where the compound or drug is freely available." xsd:string

[Instance]
id: mged:add
instance_of: mged:AtomicAction
property_value: mged:unique_identifier "MO_815" xsd:string
property_value: rdfs:comment "The procedure of placing one physical object in the same container/physical space as another." xsd:string

[Instance]
id: mged:agar
instance_of: mged:Media
property_value: rdfs:comment "A type of solid media commonly used for growing organisms" xsd:string
property_value: mged:unique_identifier "MO_935" xsd:string

[Instance]
id: mged:agar_stab
instance_of: mged:BioSourceType
property_value: mged:unique_identifier "MO_971" xsd:string
property_value: rdfs:comment "agar stab, a cell culture inoculated into agar for long term storage" xsd:string

[Instance]
id: mged:age
instance_of: mged:BioMaterialCharacteristicCategory
property_value: mged:unique_identifier "MO_467" xsd:string
property_value: rdfs:comment "A descriptor for FactorValue where age is compared." xsd:string

[Instance]
id: mged:alexa_350
instance_of: mged:LabelCompound
property_value: rdfs:comment "Absorbs at 346 nm, emission maxima at 442 nm (blue). Alexa dyes are have intense fluorescence, are photostable, stable over a wide range of pH, and are water soluble. \n" xsd:string
property_value: mged:unique_identifier "MO_512" xsd:string

[Instance]
id: mged:alexa_430
instance_of: mged:LabelCompound
property_value: rdfs:comment "Absorbs at 433 nm, emission maxima at 539 nm (yellow-green), Alexa dyes are have intense fluorescence, are photostable, stable over a wide range of pH, and are water soluble. \n" xsd:string
property_value: mged:unique_identifier "MO_401" xsd:string

[Instance]
id: mged:alexa_488
instance_of: mged:LabelCompound
property_value: mged:unique_identifier "MO_446" xsd:string
property_value: rdfs:comment "Absorbs at 495 nm, emission maxima at 519 nm (green). Alexa dyes are have intense fluorescence, are photostable, stable over a wide range of pH, and are water soluble. " xsd:string

[Instance]
id: mged:alexa_532
instance_of: mged:LabelCompound
property_value: mged:unique_identifier "MO_375" xsd:string
property_value: rdfs:comment "Absorbs at 532 nm, emission maxima at 554 nm (yellow). Alexa dyes are have intense fluorescence, are photostable, stable over a wide range of pH, and are water soluble. \n" xsd:string

[Instance]
id: mged:alexa_546
instance_of: mged:LabelCompound
property_value: mged:unique_identifier "MO_493" xsd:string
property_value: rdfs:comment "Absorbs at 556 nm, emission maxima at 573 nm (orange). Alexa dyes are have intense fluorescence, are photostable, stable over a wide range of pH, and are water soluble. \n" xsd:string

[Instance]
id: mged:alexa_568
instance_of: mged:LabelCompound
property_value: mged:unique_identifier "MO_736" xsd:string
property_value: rdfs:comment "Absorbs at 556 nm, emission maxima at 573 nm (orange). Alexa dyes are have intense fluorescence, are photostable, stable over a wide range of pH, and are water soluble. \n" xsd:string

[Instance]
id: mged:alexa_594
instance_of: mged:LabelCompound
property_value: rdfs:comment "Absorbs at 590 nm, emission maxima at 617 nm (red).  Alexa dyes are have intense fluorescence, are photostable, stable over a wide range of pH, and are water soluble. \n" xsd:string
property_value: mged:unique_identifier "MO_461" xsd:string

[Instance]
id: mged:alexa_633
instance_of: mged:LabelCompound
property_value: mged:unique_identifier "MO_345" xsd:string
property_value: rdfs:comment "Absorbs at 632 nm, emission maxima at 647 nm (red). Alexa dyes are have intense fluorescence, are photostable, stable over a wide range of pH, and are water soluble. \n" xsd:string

[Instance]
id: mged:alexa_660
instance_of: mged:LabelCompound
property_value: rdfs:comment "Absorbs at 663 nm, emission maxima at 690 nm (far-red). Alexa dyes are have intense fluorescence, are photostable, stable over a wide range of pH, and are water soluble. \n" xsd:string
property_value: mged:unique_identifier "MO_547" xsd:string

[Instance]
id: mged:alexa_680
instance_of: mged:LabelCompound
property_value: mged:unique_identifier "MO_799" xsd:string
property_value: rdfs:comment "Absorbs at 679 nm, emission maxima at 702 nm (far-red). Alexa dyes are have intense fluorescence, are photostable, stable over a wide range of pH, and are water soluble. \n" xsd:string

[Instance]
id: mged:all_pairs
instance_of: mged:MethodologicalDesign
property_value: mged:unique_identifier "MO_565" xsd:string
property_value: rdfs:comment "An all pairs experiment design type is where all labeled extracts are compared to every other labeled extract.  " xsd:string

[Instance]
id: mged:amino_acid_primary_sequence_record
instance_of: mged:DatabaseEntryType
property_value: mged:unique_identifier "MO_829" xsd:string
property_value: rdfs:comment "A record which describes and identifies an amino acid sequence which is encoded by a CDS from a primary_nucleic_acid_sequence_record" xsd:string

[Instance]
id: mged:aminosilane
instance_of: mged:SurfaceType
property_value: mged:unique_identifier "MO_747" xsd:string
property_value: rdfs:comment "a surface coating type for immobilization with the compound aminosilane" xsd:string

[Instance]
id: mged:amol
instance_of: mged:QuantityUnit
property_value: rdfs:comment "attomole, quantity unit" xsd:string
property_value: mged:unique_identifier "MO_977" xsd:string

[Instance]
id: mged:aneuploid
instance_of: mged:Ploidy
property_value: mged:unique_identifier "MO_918" xsd:string
property_value: rdfs:comment "Describes a cell, nucleus or an organism whose chromosome number is not an exact multiple of the haploid number (n)." xsd:string

[Instance]
id: mged:antibody
instance_of: mged:PhysicalBioSequenceType
property_value: rdfs:comment "glycoprotein of the immunoglobulin family that can combine specifically non-covalently, reversibly with a corresponding antigen " xsd:string
property_value: mged:unique_identifier "MO_833" xsd:string

[Instance]
id: mged:array_manufacture_software
instance_of: mged:SoftwareType
property_value: mged:unique_identifier "MO_502" xsd:string
property_value: rdfs:comment "Software to control an arrayer." xsd:string

[Instance]
id: mged:array_manufacturer
instance_of: mged:Roles
property_value: mged:unique_identifier "MO_890" xsd:string
property_value: rdfs:comment "Person or organization that manufactured the array." xsd:string

[Instance]
id: mged:array_manufacturing
instance_of: mged:ExperimentalProtocolType
property_value: rdfs:comment "The process of physically creating the array." xsd:string
property_value: mged:unique_identifier "MO_818" xsd:string

[Instance]
id: mged:array_platform_variation_design
instance_of: mged:MethodologicalDesign
property_value: rdfs:comment "An experiment in which the array platform is compared, e.g. Agilent versus \n    Affy." xsd:string
property_value: mged:unique_identifier "MO_899" xsd:string

[Instance]
id: mged:array_scanner
instance_of: mged:HardwareType
property_value: mged:unique_identifier "MO_824" xsd:string
property_value: rdfs:comment "An instrument capable of acquiring images of arrays." xsd:string

[Instance]
id: mged:arrayer
instance_of: mged:HardwareType
property_value: mged:unique_identifier "MO_697" xsd:string
property_value: rdfs:comment "An instrument capable of manufacturing arrays by spotting material." xsd:string

[Instance]
id: mged:atmosphere
instance_of: mged:EnvironmentalFactorCategory
property_value: mged:unique_identifier "MO_498" xsd:string
property_value: rdfs:comment "The atmospheric conditions used to culture or grow an organism." xsd:string

[Instance]
id: mged:aunt
instance_of: mged:FamilyRelationship
property_value: rdfs:comment "The sister of one's father or mother." xsd:string
property_value: mged:unique_identifier "MO_354" xsd:string

[Instance]
id: mged:averaged_intensity
instance_of: mged:DerivedBioAssayType
property_value: rdfs:comment "Results of data reduction involving computation of the average of multiple \n    intensities of identical type. These could include identical Features, \n    Reporters or CompositeSequences in different microarray hybridizations, \n    matched replicate spots on 2D gels run from the same sample, or repeat \n    measurements of the same metabolite in replicate cell cultures." xsd:string
property_value: mged:unique_identifier "MO_362" xsd:string

[Instance]
id: mged:barrier_facility
instance_of: mged:EnvironmentalFactorCategory
property_value: mged:unique_identifier "MO_511" xsd:string
property_value: rdfs:comment "The rating of containment system used to protect organisms from infectious agents." xsd:string

[Instance]
id: mged:bedding
instance_of: mged:DeprecatedTerms
property_value: mged:deprecation_replacement_term mged:BioMaterialCharacteristicCategory
property_value: mged:has_reason_for_deprecation mged:deleted_term
property_value: mged:deprecated_from_version mged:version_1.1.7
property_value: mged:deprecation_old_parent mged:BioMaterialCharacteristicCategory
property_value: mged:deprecation_in_version "1.1.7" xsd:string
property_value: mged:unique_identifier "MO_615" xsd:string
property_value: mged:deprecation_reason "deleted_term" xsd:string
property_value: rdfs:comment "The material (e.g. straw) that an animal sleeps on" xsd:string

[Instance]
id: mged:beginning_of_stage
instance_of: mged:InitialTimePoint
property_value: rdfs:comment "time point that indicates the start of some developmental stage" xsd:string
property_value: mged:unique_identifier "MO_608" xsd:string

[Instance]
id: mged:behavior_design
instance_of: mged:DeprecatedTerms
property_value: mged:deprecation_old_parent mged:BiologicalProperty
property_value: mged:split_to_term mged:innate_behavior_design
property_value: mged:has_reason_for_deprecation mged:split_term
property_value: mged:split_to_term mged:stimulated_design_type
property_value: mged:deprecated_from_version mged:version_1.1.9
property_value: mged:deprecation_reason "split_term" xsd:string
property_value: mged:deprecation_in_version "1.1.9" xsd:string
property_value: rdfs:comment "The specific actions or reactions of an organism in response to external or internal stimuli. Patterned activity of a whole organism in a manner dependent upon some combination of that organism's internal state and external conditions." xsd:string
property_value: mged:unique_identifier "MO_532" xsd:string

[Instance]
id: mged:behavioral_design_type
instance_of: mged:DeprecatedTerms
property_value: mged:was_replaced_by mged:innate_behavior_design
property_value: mged:deprecated_from_version mged:version_1.1.9
property_value: mged:replaced_with_term mged:innate_behavior_design
property_value: mged:deprecation_old_parent mged:PerturbationalDesign
property_value: mged:has_reason_for_deprecation mged:replaced_term
property_value: mged:deprecation_reason "replaced_term" xsd:string
property_value: mged:deprecation_in_version "1.1.9" xsd:string
property_value: rdfs:comment "A design type in which some behavior(s) of an organism is studied. The behavior can be innate, such as path finding in bees, or in response to an\nexperimental behavioral stimulus such as sleep deprivation." xsd:string
property_value: mged:unique_identifier "MO_766" xsd:string

[Instance]
id: mged:behavioral_stimulus
instance_of: mged:ComplexAction
property_value: rdfs:comment "The organism is forced to respond to a stimulus with some behavior (e.g., avoidance, obtaining a reward, etc.) " xsd:string
property_value: mged:unique_identifier "MO_674" xsd:string

[Instance]
id: mged:behavioral_stimulus
instance_of: mged:ComplexAction
property_value: rdfs:comment "The organism is forced to respond to a stimulus with some behavior (e.g., avoidance, obtaining a reward, etc.) " xsd:string
property_value: mged:unique_identifier "MO_674" xsd:string

[Instance]
id: mged:bibliographic_record
instance_of: mged:DatabaseEntryType
property_value: rdfs:comment "A record which describes and identifies a paper publication  e.g. a medline record" xsd:string
property_value: mged:unique_identifier "MO_923" xsd:string

[Instance]
id: mged:binding_site_identification_design
instance_of: mged:BioMolecularAnnotation
property_value: mged:synonym "ChIP-chip" xsd:string
property_value: mged:synonym "chromatin_immunoprecipitation" xsd:string
property_value: rdfs:comment "A binding site identification design type investigates protein binding sites on nucleic acids\nnon-exact synonym: ChIP, chromatin immunoprecipitation, chromatin IP" xsd:string
property_value: mged:synonym "chromatin IP" xsd:string
property_value: mged:unique_identifier "MO_933" xsd:string
property_value: mged:synonym "chromatin immunoprecipitation" xsd:string

[Instance]
id: mged:binding_site_identification_design
instance_of: mged:BioMolecularAnnotation
property_value: mged:synonym "ChIP-chip" xsd:string
property_value: mged:synonym "chromatin_immunoprecipitation" xsd:string
property_value: rdfs:comment "A binding site identification design type investigates protein binding sites on nucleic acids\nnon-exact synonym: ChIP, chromatin immunoprecipitation, chromatin IP" xsd:string
property_value: mged:synonym "chromatin IP" xsd:string
property_value: mged:unique_identifier "MO_933" xsd:string
property_value: mged:synonym "chromatin immunoprecipitation" xsd:string

[Instance]
id: mged:bioassay_data_transformation_software
instance_of: mged:SoftwareType
property_value: rdfs:comment "Software used to transform the Measured or DerivedBioAssay data e.g. normalization.\nNon-exact synonym: normalization software" xsd:string
property_value: mged:unique_identifier "MO_672" xsd:string
property_value: mged:synonym "normalization software" xsd:string

[Instance]
id: mged:bioassay_replicate_reduction
instance_of: mged:DerivedBioAssayType
property_value: rdfs:comment "Results of data reduction involving computation of a representative value, e.g. averaging across a group of identical Features, Reporters or CompositeSequences from 2 or more hybridizations, matched replicate spots on 2D gels run from the same or an equivalent sample, or repeat measurements of the same metabolite in replicate cell cultures." xsd:string
property_value: mged:unique_identifier "MO_976" xsd:string

[Instance]
id: mged:biological_fluid_collection
instance_of: mged:ComplexAction
property_value: rdfs:comment "The action of collecting biological fluids including bodily secretions, exudates, transudates etc. and sampling of cytoplasm. The purpose of sampling may range from collecting other organisms (i.e. pathogens) to studying fluid composition." xsd:string
property_value: mged:unique_identifier "MO_685" xsd:string

[Instance]
id: mged:biological_fluid_collection
instance_of: mged:ComplexAction
property_value: rdfs:comment "The action of collecting biological fluids including bodily secretions, exudates, transudates etc. and sampling of cytoplasm. The purpose of sampling may range from collecting other organisms (i.e. pathogens) to studying fluid composition." xsd:string
property_value: mged:unique_identifier "MO_685" xsd:string

[Instance]
id: mged:biological_replicate
instance_of: mged:ReplicateDescriptionType
property_value: mged:unique_identifier "MO_952" xsd:string
property_value: rdfs:comment "A replicate that consists of independent biological replicates made from different individual BioSources." xsd:string

[Instance]
id: mged:biological_replicate
instance_of: mged:ReplicateDescriptionType
property_value: mged:unique_identifier "MO_952" xsd:string
property_value: rdfs:comment "A replicate that consists of independent biological replicates made from different individual BioSources." xsd:string

[Instance]
id: mged:biological_resource_record
instance_of: mged:DatabaseEntryType
property_value: mged:unique_identifier "MO_989" xsd:string
property_value: rdfs:comment "A record which describes and identifies a biological resource such as a cone or strain e.g. an ATCC record Jax strain list" xsd:string

[Instance]
id: mged:biomaterial_provider
instance_of: mged:BioMaterialCharacteristicCategory
property_value: rdfs:comment "Term used to describe a role or factor value for the person or organization that provides a BioMaterial. " xsd:string
property_value: mged:unique_identifier "MO_591" xsd:string

[Instance]
id: mged:biomaterial_provider
instance_of: mged:BioMaterialCharacteristicCategory
property_value: rdfs:comment "Term used to describe a role or factor value for the person or organization that provides a BioMaterial. " xsd:string
property_value: mged:unique_identifier "MO_591" xsd:string

[Instance]
id: mged:biopsy
instance_of: mged:ComplexAction
property_value: mged:unique_identifier "MO_711" xsd:string
property_value: rdfs:comment "The process of removing tissue from a living organism." xsd:string

[Instance]
id: mged:biosequence_provider
instance_of: mged:Roles
property_value: rdfs:comment "Provider of biosequences (clones, oligos etc) for deposition on the array." xsd:string
property_value: mged:unique_identifier "MO_881" xsd:string

[Instance]
id: mged:biotin
instance_of: mged:LabelCompound
property_value: mged:unique_identifier "MO_793" xsd:string
property_value: rdfs:comment "a compound used for labeling/detection purposes" xsd:string

[Instance]
id: mged:birth
instance_of: mged:InitialTimePoint
property_value: rdfs:comment "the action of emergence and separation of offspring from the mother." xsd:string
property_value: mged:unique_identifier "MO_710" xsd:string

[Instance]
id: mged:blood
instance_of: mged:DeprecatedTerms
property_value: mged:deprecation_replacement_term mged:BioSourceType
property_value: mged:deprecated_from_version mged:version_1.1.9
property_value: mged:has_reason_for_deprecation mged:deleted_term
property_value: mged:deprecation_old_parent mged:BioSourceType
property_value: rdfs:comment "A biomaterial obtained as fluid consisting of plasma, blood cells and platelets." xsd:string
property_value: mged:deprecation_reason "deleted_term" xsd:string
property_value: mged:unique_identifier "MO_409" xsd:string
property_value: mged:deprecation_in_version "1.1.9" xsd:string

[Instance]
id: mged:book
instance_of: mged:PublicationType
property_value: rdfs:comment "A publication type which has an ISBN." xsd:string
property_value: mged:unique_identifier "MO_627" xsd:string

[Instance]
id: mged:boolean
instance_of: mged:DataType
property_value: mged:unique_identifier "MO_826" xsd:string
property_value: rdfs:comment "The values are either TRUE or FALSE, which can be expressed as 1 and 0." xsd:string

[Instance]
id: mged:brother
instance_of: mged:FamilyRelationship
property_value: mged:unique_identifier "MO_655" xsd:string
property_value: rdfs:comment " A male having the same genetic parents as another, or one genetic parent in common with another." xsd:string

[Instance]
id: mged:cDNA_clone
instance_of: mged:DeprecatedTerms
property_value: mged:has_reason_for_deprecation mged:deleted_term
property_value: mged:deprecation_replacement_term mged:PhysicalBioSequenceType
property_value: mged:deprecated_from_version mged:version_1.2.0
property_value: mged:deprecation_old_parent mged:PhysicalBioSequenceType
property_value: mged:unique_identifier "MO_966" xsd:string
property_value: mged:synonym "cDNA" xsd:string
property_value: rdfs:comment "sequence of complementary cDNA copy of an RNA molecule contained on a plasmid including the plasmid sequence, used when the entire clone is spotted\nnon-exact synonym: cDNA, complementary DNA" xsd:string
property_value: mged:deprecation_reason "deleted_term" xsd:string
property_value: mged:deprecation_in_version "1.2.0" xsd:string
property_value: mged:synonym "complementary DNA" xsd:string

[Instance]
id: mged:candela
instance_of: mged:LightUnit
property_value: rdfs:comment "One lumen per steradian. A steradian is a fraction of the surface area of a sphere that is equal to the square of the radius divided by the total surface area. This is approximately 8% of the total surface area.\nExact synonym: candle power" xsd:string
property_value: mged:synonym "candle power" xsd:string
property_value: mged:unique_identifier "MO_572" xsd:string

[Instance]
id: mged:candelas_per_square_meter
instance_of: mged:LightUnit
property_value: rdfs:comment "Unit of brightness or luminance." xsd:string
property_value: mged:unique_identifier "MO_813" xsd:string

[Instance]
id: mged:cc
instance_of: mged:VolumeUnit
property_value: rdfs:comment "a cubic centimeter, volume unit" xsd:string
property_value: mged:unique_identifier "MO_834" xsd:string

[Instance]
id: mged:cell
instance_of: mged:MaterialType
property_value: mged:unique_identifier "MO_612" xsd:string
property_value: rdfs:comment "One or more dissociated cell(s) possibly heterogeneous, excluding single cell organisms." xsd:string

[Instance]
id: mged:cell_cycle_design
instance_of: mged:BiologicalProperty
property_value: mged:unique_identifier "MO_822" xsd:string
property_value: rdfs:comment "A cell cycle design experiment design type is one that assays events that occurs in relation to the cell cycle, which is the period between the formation of a cell, by division of its mother cell and the time when the cell itself divides to form two daughter cells." xsd:string

[Instance]
id: mged:cell_line
instance_of: mged:BioMaterialCharacteristicCategory
property_value: mged:unique_identifier "MO_562" xsd:string
property_value: rdfs:comment "A descriptor for FactorValue where CellLine is compared.  " xsd:string

[Instance]
id: mged:cell_lysate
instance_of: mged:MaterialType
property_value: mged:unique_identifier "MO_903" xsd:string
property_value: rdfs:comment "cell lysate, a collection of cells whose membranes have been disrupted" xsd:string

[Instance]
id: mged:cell_ontology
instance_of: mged:TargetedCellTypeDatabase
property_value: mged:has_machine_readable_URI "http://cvs.sourceforge.net/views.py/obo/obo/ontology/anatomy/cell_type/cell.ontology?rev=HEAD&amp;content-type=text/vnd.viewcvs-markup" xsd:string
property_value: rdfs:comment "database of cell ontology terms" xsd:string
property_value: mged:unique_identifier "MO_404" xsd:string

[Instance]
id: mged:cell_ontology
instance_of: mged:TargetedCellTypeDatabase
property_value: mged:has_machine_readable_URI "http://cvs.sourceforge.net/views.py/obo/obo/ontology/anatomy/cell_type/cell.ontology?rev=HEAD&amp;content-type=text/vnd.viewcvs-markup" xsd:string
property_value: rdfs:comment "database of cell ontology terms" xsd:string
property_value: mged:unique_identifier "MO_404" xsd:string

[Instance]
id: mged:cell_type
instance_of: mged:BioMaterialCharacteristicCategory
property_value: rdfs:comment "A descriptor for FactorValue where CellType is compared.  " xsd:string
property_value: mged:unique_identifier "MO_548" xsd:string

[Instance]
id: mged:cell_type_comparison_design
instance_of: mged:BiologicalProperty
property_value: mged:unique_identifier "MO_764" xsd:string
property_value: rdfs:comment "A cell type comparison design experiment design type compares cells of different type for example different cell lines." xsd:string

[Instance]
id: mged:cells_per_ml
instance_of: mged:ConcentrationUnitOther
property_value: mged:unique_identifier "MO_727" xsd:string
property_value: rdfs:comment "the number of cells per ml" xsd:string

[Instance]
id: mged:cellular_modification_design
instance_of: mged:TechnologicalDesign
property_value: mged:unique_identifier "MO_392" xsd:string
property_value: mged:synonym "RNAi" xsd:string
property_value: rdfs:comment "A cellular modification design type is where a modification of the transcriptome, proteome (not genome) is made, for example RNAi, antibody targeting. " xsd:string

[Instance]
id: mged:cellular_modification_design
instance_of: mged:TechnologicalDesign
property_value: mged:unique_identifier "MO_392" xsd:string
property_value: mged:synonym "RNAi" xsd:string
property_value: rdfs:comment "A cellular modification design type is where a modification of the transcriptome, proteome (not genome) is made, for example RNAi, antibody targeting. " xsd:string

[Instance]
id: mged:cellular_process_design
instance_of: mged:BiologicalProperty
property_value: rdfs:comment "Processes that are carried out at the cellular level, but are not necessarily restricted to a single cell. For example, cell communication occurs among more than one cell, but occurs at the cellular level." xsd:string
property_value: mged:unique_identifier "MO_810" xsd:string

[Instance]
id: mged:centrifuge
instance_of: mged:HardwareType
property_value: mged:unique_identifier "MO_476" xsd:string
property_value: rdfs:comment "An instrument capable of applying centrifugal force to tubes or microtiter plates." xsd:string

[Instance]
id: mged:cfu_per_ml
instance_of: mged:ConcentrationUnitOther
property_value: rdfs:comment "the number of colony forming units per ml" xsd:string
property_value: mged:unique_identifier "MO_788" xsd:string

[Instance]
id: mged:change_biomaterial_characteristics
instance_of: mged:ExperimentalProtocolType
property_value: mged:synonym "change growth condition" xsd:string
property_value: rdfs:comment "Indicates that one or more BioMaterialCharacteristics have changed during the treatment of a BioMaterial. \nNon exact synonym: change growth condition, change environment" xsd:string
property_value: mged:synonym "change environment" xsd:string
property_value: mged:unique_identifier "MO_383" xsd:string

[Instance]
id: mged:change_biomaterial_characteristics
instance_of: mged:ExperimentalProtocolType
property_value: mged:synonym "change growth condition" xsd:string
property_value: rdfs:comment "Indicates that one or more BioMaterialCharacteristics have changed during the treatment of a BioMaterial. \nNon exact synonym: change growth condition, change environment" xsd:string
property_value: mged:synonym "change environment" xsd:string
property_value: mged:unique_identifier "MO_383" xsd:string

[Instance]
id: mged:change_humidity
instance_of: mged:AtomicAction
property_value: rdfs:comment "The action of changing the relative humidity, e.g. from 1% to 10%." xsd:string
property_value: mged:unique_identifier "MO_917" xsd:string

[Instance]
id: mged:change_light
instance_of: mged:AtomicAction
property_value: mged:unique_identifier "MO_549" xsd:string
property_value: rdfs:comment "Change in light intensity or wavelength. " xsd:string

[Instance]
id: mged:change_temperature
instance_of: mged:AtomicAction
property_value: rdfs:comment "Change in temperature.  " xsd:string
property_value: mged:unique_identifier "MO_677" xsd:string

[Instance]
id: mged:chrome_border
instance_of: mged:FiducialType
property_value: mged:unique_identifier "MO_491" xsd:string
property_value: rdfs:comment "the chrome border on an Affymetrix type array which is used as a point of\nreference for orientation (fiducial)" xsd:string

[Instance]
id: mged:chromosomal_deletion
instance_of: mged:ChromosomalAberrationClassification
property_value: mged:unique_identifier "MO_922" xsd:string
property_value: rdfs:comment "The loss of a segment of the genetic material from a chromosome." xsd:string

[Instance]
id: mged:chromosomal_duplication
instance_of: mged:ChromosomalAberrationClassification
property_value: rdfs:comment "An irregularity in the number of chromosomes, usually in the form of a gain of genetic material." xsd:string
property_value: mged:unique_identifier "MO_1002" xsd:string

[Instance]
id: mged:chromosomal_insertion
instance_of: mged:ChromosomalAberrationClassification
property_value: mged:unique_identifier "MO_518" xsd:string
property_value: rdfs:comment "The gain of a segment of the genetic material in a chromosome by fragmentation of a chromosome and transfer of the broken-off portion of another chromosome or other sources." xsd:string

[Instance]
id: mged:chromosomal_inversion
instance_of: mged:ChromosomalAberrationClassification
property_value: mged:unique_identifier "MO_622" xsd:string
property_value: rdfs:comment "Chromosome segments that have been turned through 180 degrees with the result that the gene sequence for the segment is reversed with respect to the rest of the chromosome." xsd:string

[Instance]
id: mged:chromosomal_substitution
instance_of: mged:GeneticModification
property_value: rdfs:comment "A state/condition describing a cell, or organism, in which all, or part, of a chromosome from a donor replaces that of the recipient. Examples include strains created by repeated backcrossing as well as those created by recombinant methods.  For single gene insertion, use the term gene_knock_in." xsd:string
property_value: mged:unique_identifier "MO_995" xsd:string

[Instance]
id: mged:chromosomal_translocation
instance_of: mged:ChromosomalAberrationClassification
property_value: rdfs:comment "A type of aberration characterized by fragmentation of a chromosome and transfer of the broken-off portion to another chromosome, often of a different pair." xsd:string
property_value: mged:unique_identifier "MO_368" xsd:string

[Instance]
id: mged:chromosome
instance_of: mged:DeprecatedTerms
property_value: mged:deprecation_replacement_term mged:TheoreticalBioSequenceType
property_value: mged:deprecation_replacement_term mged:PhysicalBioSequenceType
property_value: mged:deprecation_old_parent mged:PhysicalBioSequenceType
property_value: mged:deprecated_from_version mged:version_1.2.0
property_value: mged:has_reason_for_deprecation mged:deleted_term
property_value: mged:deprecation_old_parent mged:TheoreticalBioSequenceType
property_value: mged:unique_identifier "MO_578" xsd:string
property_value: rdfs:comment "Physical or theoretical sequence of, or representing a chromosome, one of the DNA molecules that comprises the genome.  " xsd:string
property_value: mged:deprecation_reason "deleted_term" xsd:string
property_value: mged:deprecation_in_version "1.2.0" xsd:string

[Instance]
id: mged:circadian_rhythm_design
instance_of: mged:DeprecatedTerms
property_value: mged:has_reason_for_deprecation mged:replaced_term
property_value: mged:deprecation_old_parent mged:BiologicalProperty
property_value: mged:replaced_with_term mged:physiological_process_design
property_value: mged:deprecated_from_version mged:version_1.1.7
property_value: mged:was_replaced_by mged:physiological_process_design
property_value: rdfs:comment "A circadian rhythm experiment design type assays the events associated with the circadian rhythm which is a biological activity that exhibits an endogenous periodicity independently of any daily variation in the environment." xsd:string
property_value: mged:deprecation_reason "replaced_term" xsd:string
property_value: mged:deprecation_in_version "1.1.7" xsd:string
property_value: mged:unique_identifier "MO_539" xsd:string

[Instance]
id: mged:clinical_history_design
instance_of: mged:EpidemiologicalDesign
property_value: mged:unique_identifier "MO_832" xsd:string
property_value: rdfs:comment "A clinical history design type is where the organisms clinical history of diagnosis,  treatments, e.g. vaccinations, surgery etc. is studied." xsd:string

[Instance]
id: mged:clinical_information
instance_of: mged:BioMaterialCharacteristicCategory
property_value: mged:unique_identifier "MO_816" xsd:string
property_value: rdfs:comment "A descriptor for FactorValue where ClinicalInformation is compared.  " xsd:string

[Instance]
id: mged:clinical_record
instance_of: mged:DatabaseEntryType
property_value: rdfs:comment "record which describes and identifies clinical information about an organism" xsd:string
property_value: mged:unique_identifier "MO_852" xsd:string

[Instance]
id: mged:clinical_treatment
instance_of: mged:BioMaterialCharacteristicCategory
property_value: rdfs:comment "A descriptor for a clinical treatment for a patient." xsd:string
property_value: mged:unique_identifier "MO_384" xsd:string

[Instance]
id: mged:clone_of_unknown_source
instance_of: mged:PhysicalBioSequenceType
property_value: mged:unique_identifier "MO_371" xsd:string
property_value: rdfs:comment "Sequence from some nucleic acid copy and the associated vector for which the source clone supplier is unknown." xsd:string

[Instance]
id: mged:clustered_data
instance_of: mged:DerivedBioAssayType
property_value: mged:unique_identifier "MO_418" xsd:string
property_value: rdfs:comment "Results of an analysis method that groups data based on a measure of similarity, e.g. Pearson correlation coefficient, Euclidean distance. " xsd:string

[Instance]
id: mged:clustering_software
instance_of: mged:SoftwareType
property_value: mged:unique_identifier "MO_464" xsd:string
property_value: rdfs:comment "Software used to cluster the data." xsd:string

[Instance]
id: mged:cm
instance_of: mged:DistanceUnit
property_value: mged:unique_identifier "MO_837" xsd:string
property_value: rdfs:comment "centimeter, a unit of distance" xsd:string

[Instance]
id: mged:co-expression_design
instance_of: mged:BioMolecularAnnotation
property_value: mged:synonym "guilt by association" xsd:string
property_value: mged:unique_identifier "MO_904" xsd:string
property_value: rdfs:comment "A co-expression experiment design type identifies genes which are coordinately expressed and are potentially used to infer a role in a biological process(es)\nnon-exact synonym: guilt by association" xsd:string

[Instance]
id: mged:coitus
instance_of: mged:InitialTimePoint
property_value: rdfs:comment "the physical act of copulation that occurs during the process of sexual reproduction\nsynonyms: copulation, insemination" xsd:string
property_value: mged:synonym "copulation" xsd:string
property_value: mged:unique_identifier "MO_783" xsd:string
property_value: mged:synonym "insemination" xsd:string

[Instance]
id: mged:collapsed_spot_replicate
instance_of: mged:DerivedBioAssayType
property_value: mged:unique_identifier "MO_789" xsd:string
property_value: rdfs:comment "Results of data reduction involving computation of a representative value, e.g. by averaging, for a group of replicated Features, Reporters or CompositeSequences from a single hybridization." xsd:string

[Instance]
id: mged:comparative_genome_hybridization_design
instance_of: mged:TechnologicalDesign
property_value: mged:synonym "CGH" xsd:string
property_value: mged:unique_identifier "MO_856" xsd:string
property_value: mged:synonym "array CGH" xsd:string
property_value: rdfs:comment "Experiment design type in which genomic content is studied using an array based assay." xsd:string
property_value: mged:synonym "array_CGH" xsd:string

[Instance]
id: mged:comparative_genome_hybridization_design
instance_of: mged:TechnologicalDesign
property_value: mged:synonym "CGH" xsd:string
property_value: mged:unique_identifier "MO_856" xsd:string
property_value: mged:synonym "array CGH" xsd:string
property_value: rdfs:comment "Experiment design type in which genomic content is studied using an array based assay." xsd:string
property_value: mged:synonym "array_CGH" xsd:string

[Instance]
id: mged:compound_based_treatment
instance_of: mged:ExperimentalProtocolType
property_value: rdfs:comment "The treatment is effected by a defined chemical or biological compound.   The compound may be a drug, solvent, chemical, etc., with a property that can be measured such as concentration." xsd:string
property_value: mged:unique_identifier "MO_798" xsd:string

[Instance]
id: mged:compound_based_treatment
instance_of: mged:ExperimentalProtocolType
property_value: rdfs:comment "The treatment is effected by a defined chemical or biological compound.   The compound may be a drug, solvent, chemical, etc., with a property that can be measured such as concentration." xsd:string
property_value: mged:unique_identifier "MO_798" xsd:string

[Instance]
id: mged:compound_record
instance_of: mged:DatabaseEntryType
property_value: rdfs:comment "a record which describes and identifies a compound e.g. drug record part of NCI thesaurus" xsd:string
property_value: mged:unique_identifier "MO_546" xsd:string

[Instance]
id: mged:compound_treatment_design
instance_of: mged:PerturbationalDesign
property_value: mged:unique_identifier "MO_555" xsd:string
property_value: rdfs:comment "A compound treatment design type is where the response to administration of a compound or chemical (including biological compounds such as hormones)  is assayed." xsd:string

[Instance]
id: mged:computational_feature
instance_of: mged:SeqFeatureBasis
property_value: rdfs:comment "Computationally derived sequence feature." xsd:string
property_value: mged:unique_identifier "MO_411" xsd:string

[Instance]
id: mged:computed_amino_acid_sequence_feature_record
instance_of: mged:DatabaseEntryType
property_value: mged:unique_identifier "MO_797" xsd:string
property_value: rdfs:comment "a record which describes and identifies an amino acid feature which is computationally derived  e.g. PFAM" xsd:string

[Instance]
id: mged:computed_nucleic_acid_sequence_feature_record
instance_of: mged:DatabaseEntryType
property_value: mged:unique_identifier "MO_774" xsd:string
property_value: rdfs:comment "A record which identifies and describes a nucleic sequence feature which has been computationally determined or predicted E.g. and Ensembl record" xsd:string

[Instance]
id: mged:computed_protein_structure_record
instance_of: mged:DatabaseEntryType
property_value: rdfs:comment "a record which describes and identifies a protein structure e.g. PDB" xsd:string
property_value: mged:unique_identifier "MO_765" xsd:string

[Instance]
id: mged:computer
instance_of: mged:HardwareType
property_value: rdfs:comment " A device capable of applying software." xsd:string
property_value: mged:unique_identifier "MO_510" xsd:string

[Instance]
id: mged:concentrate
instance_of: mged:AtomicAction
property_value: rdfs:comment "Increasing the concentration of solutes in a solution or suspension.  " xsd:string
property_value: mged:unique_identifier "MO_883" xsd:string

[Instance]
id: mged:condition_specificity
instance_of: mged:HigherLevelAnalysisProtocolType
property_value: mged:unique_identifier "MO_417" xsd:string
property_value: rdfs:comment "An analysis aimed at ranking genes or transcripts according to the uniformity of expression across a set of conditions. For example, the analysis can be used to rank genes according to the degree of tissue or developmental stage specificity." xsd:string

[Instance]
id: mged:consensus_DNA
instance_of: mged:TheoreticalBioSequenceType
property_value: rdfs:comment "DNA sequence produced from some base calling or alignment algorithm which uses multiple sequence as input" xsd:string
property_value: mged:unique_identifier "MO_361" xsd:string

[Instance]
id: mged:consensus_mRNA
instance_of: mged:TheoreticalBioSequenceType
property_value: rdfs:comment "mRNA sequence produced from some base calling or alignment algorithm which uses aligned or assembled multiple sequences as input." xsd:string
property_value: mged:unique_identifier "MO_423" xsd:string

[Instance]
id: mged:consortium_member
instance_of: mged:Roles
property_value: rdfs:comment "A member of a consortium of institutions." xsd:string
property_value: mged:unique_identifier "MO_778" xsd:string

[Instance]
id: mged:consultant
instance_of: mged:Roles
property_value: rdfs:comment "A contact who provides some service related to some aspect of the experiment which is not data coding or analysis. E.g. help with an experimental design." xsd:string
property_value: mged:unique_identifier "MO_984" xsd:string

[Instance]
id: mged:control_biosequence
instance_of: mged:ControlType
property_value: rdfs:comment "A Reporter associated with a BioSequence that has a context dependent predicted signal. e.g. a yeast reporter on a human array is a control_biosequence expected to be of low signal if no spikes are used. If spikes are used, the signal is expected to be high." xsd:string
property_value: mged:unique_identifier "MO_940" xsd:string

[Instance]
id: mged:control_buffer
instance_of: mged:ControlType
property_value: mged:unique_identifier "MO_505" xsd:string
property_value: rdfs:comment "A Reporter where only buffer was deposited on the array" xsd:string

[Instance]
id: mged:control_design_element_group_type
instance_of: mged:DesignElementGroupType
property_value: mged:unique_identifier "MO_414" xsd:string
property_value: rdfs:comment "A grouping of DesignElements features/Reporters/Composites which are not designed to detect a signal in the biomaterial and which are on the array for control purposes e.g. a grouping of controls used for spiking." xsd:string

[Instance]
id: mged:control_empty
instance_of: mged:ControlType
property_value: rdfs:comment "A Reporter where no material or  buffer was deposited on the array" xsd:string
property_value: mged:unique_identifier "MO_830" xsd:string

[Instance]
id: mged:control_genomic_DNA
instance_of: mged:ControlType
property_value: rdfs:comment "A Reporter where genomic DNA has been deposited, the genomic DNA may be fragmented, e.g. salmon sperm DNA, Cot1DNA. " xsd:string
property_value: mged:unique_identifier "MO_449" xsd:string

[Instance]
id: mged:control_hybridization_quality
instance_of: mged:ControlType
property_value: mged:unique_identifier "MO_385" xsd:string
property_value: rdfs:comment "A Reporter that could be used to determine the quality and general performance of the labeled extract.  An example is a pool of BioSequences representing widely-expressed genes (i.e., housekeeping genes)." xsd:string

[Instance]
id: mged:control_label
instance_of: mged:ControlType
property_value: mged:unique_identifier "MO_708" xsd:string
property_value: rdfs:comment "Reporter used as a control where some label has been deposited. This includes fluor and radioactively labeled oligos and fluors alone.\n  " xsd:string

[Instance]
id: mged:control_reporter_size
instance_of: mged:ControlType
property_value: rdfs:comment "A Reporter of whose BioSequence is of known length used as a methodological control for hybridization efficiency." xsd:string
property_value: mged:unique_identifier "MO_431" xsd:string

[Instance]
id: mged:control_spike_calibration
instance_of: mged:ControlType
property_value: rdfs:comment "A Reporter that could be hybridized to an exogenously added nucleic acid or protein (spike) before or during hybridization and is used as a control for data processing. It may be deposited at one or more known concentrations (calibration). A reporter may be a spike, a calibration control or both." xsd:string
property_value: mged:unique_identifier "MO_364" xsd:string

[Instance]
id: mged:control_unknown_type
instance_of: mged:ControlType
property_value: mged:unique_identifier "MO_925" xsd:string
property_value: rdfs:comment "A Reporter indicated as being a control of unknown type. " xsd:string

[Instance]
id: mged:cosine_distance
instance_of: mged:NodeValueType
property_value: mged:unique_identifier "MO_550" xsd:string
property_value: rdfs:comment "The cosine distance of two vectors is the cosine of the angle between them. This measures the difference in direction between two vectors, irrespective of their lengths." xsd:string

[Instance]
id: mged:cosmid
instance_of: mged:DeprecatedTerms
property_value: mged:has_reason_for_deprecation mged:deleted_term
property_value: mged:deprecation_old_parent mged:PhysicalBioSequenceType
property_value: mged:deprecation_replacement_term mged:PhysicalBioSequenceType
property_value: mged:deprecated_from_version mged:version_1.2.0
property_value: mged:deprecation_reason "deleted_term" xsd:string
property_value: mged:unique_identifier "MO_888" xsd:string
property_value: mged:deprecation_in_version "1.2.0" xsd:string
property_value: rdfs:comment "sequence from cosmid, a hybrid cloning vector containing cos sites, usually of ~40kB size" xsd:string

[Instance]
id: mged:count
instance_of: mged:QuantityUnitOther
property_value: rdfs:comment "Unit for a simple count of things" xsd:string
property_value: mged:unique_identifier "MO_500" xsd:string

[Instance]
id: mged:cpm
instance_of: mged:RadiationUnit
property_value: mged:unique_identifier "MO_348" xsd:string
property_value: rdfs:comment "counts per minute, unit of light emissions produced by ionizing radiation." xsd:string

[Instance]
id: mged:ctDNA
instance_of: mged:PhysicalBioSequenceType
property_value: mged:unique_identifier "MO_586" xsd:string
property_value: mged:synonym "chloroplast DNA" xsd:string
property_value: rdfs:comment "ctDNA: sequence from the chloroplast \nsynonym: chloroplast DNA" xsd:string

[Instance]
id: mged:curated_amino_acid_sequence_record
instance_of: mged:DatabaseEntryType
property_value: mged:unique_identifier "MO_451" xsd:string
property_value: rdfs:comment "A record which describes and identifies an amino acid sequence which has been curated" xsd:string

[Instance]
id: mged:curated_gene_record
instance_of: mged:DatabaseEntryType
property_value: mged:unique_identifier "MO_913" xsd:string
property_value: rdfs:comment "A record which describes and identifies nucleic acid sequence which has been identified as a gene by a curator. e.g. Flybase gene record" xsd:string

[Instance]
id: mged:curated_nucleic_acid_sequence_feature_record
instance_of: mged:DatabaseEntryType
property_value: mged:unique_identifier "MO_644" xsd:string
property_value: rdfs:comment "A record which identifies a nucleic acid sequence feature(s) and which has been curated." xsd:string

[Instance]
id: mged:curator
instance_of: mged:Roles
property_value: rdfs:comment "person who checks the consistency of the data and MAGE-ML file" xsd:string
property_value: mged:unique_identifier "MO_893" xsd:string

[Instance]
id: mged:cytoplasmic_RNA
instance_of: mged:MaterialType
property_value: mged:unique_identifier "MO_978" xsd:string
property_value: rdfs:comment "RNA obtained from the cytoplasm." xsd:string

[Instance]
id: mged:data_analyst
instance_of: mged:Roles
property_value: mged:unique_identifier "MO_753" xsd:string
property_value: rdfs:comment "A contact who performs data analysis, e.g. statistician." xsd:string

[Instance]
id: mged:data_coder
instance_of: mged:Roles
property_value: rdfs:comment "person who prepares the MAGE-ML file" xsd:string
property_value: mged:unique_identifier "MO_695" xsd:string

[Instance]
id: mged:date
instance_of: mged:DataType
property_value: rdfs:comment "Time stated in terms of the day, month, and year." xsd:string
property_value: mged:unique_identifier "MO_587" xsd:string

[Instance]
id: mged:daughter
instance_of: mged:FamilyRelationship
property_value: mged:unique_identifier "MO_665" xsd:string
property_value: rdfs:comment "The female offspring of the patient or individual under study." xsd:string

[Instance]
id: mged:days
instance_of: mged:TimeUnit
property_value: mged:synonym "d" xsd:string
property_value: rdfs:comment "24 hours, time unit" xsd:string
property_value: mged:unique_identifier "MO_513" xsd:string

[Instance]
id: mged:decontaminate
instance_of: mged:ExperimentalProtocolType
property_value: mged:unique_identifier "MO_389" xsd:string
property_value: rdfs:comment "Treatment to remove organisms present that were not planned as part of the study (e.g., mycoplasma). " xsd:string

[Instance]
id: mged:decontaminate
instance_of: mged:ExperimentalProtocolType
property_value: mged:unique_identifier "MO_389" xsd:string
property_value: rdfs:comment "Treatment to remove organisms present that were not planned as part of the study (e.g., mycoplasma). " xsd:string

[Instance]
id: mged:degrees_C
instance_of: mged:TemperatureUnit
property_value: rdfs:comment "degrees celsius, unit of temperature" xsd:string
property_value: mged:unique_identifier "MO_980" xsd:string

[Instance]
id: mged:degrees_F
instance_of: mged:TemperatureUnit
property_value: rdfs:comment "degrees Fahrenheit, unit of temperature" xsd:string
property_value: mged:unique_identifier "MO_812" xsd:string

[Instance]
id: mged:deleted_term
instance_of: mged:DeprecationReason
property_value: rdfs:comment "The term was deleted from the MGED CoreOntology." xsd:string

[Instance]
id: mged:development_or_differentiation_design
instance_of: mged:BiologicalProperty
property_value: rdfs:comment "A development or differentiation experiment design type assays events associated with development or differentiation or moving through a life cycle. Development applies to organism(s) acquiring a mature state, and differentiation applies to cells acquiring specialized functions." xsd:string
property_value: mged:unique_identifier "MO_892" xsd:string

[Instance]
id: mged:developmental_stage
instance_of: mged:BioMaterialCharacteristicCategory
property_value: rdfs:comment "A descriptor for FactorValue where DevelopmentalStage is compared.  " xsd:string
property_value: mged:unique_identifier "MO_878" xsd:string

[Instance]
id: mged:diameter_aberration
instance_of: mged:DefectType
property_value: rdfs:comment "The diameter of the Feature is much smaller or much larger than expected based on the spotting pin diameter." xsd:string
property_value: mged:unique_identifier "MO_781" xsd:string

[Instance]
id: mged:differential_expression
instance_of: mged:HigherLevelAnalysisProtocolType
property_value: rdfs:comment "An analysis aimed at identifying differentially expressed genes in two or more conditions." xsd:string
property_value: mged:unique_identifier "MO_874" xsd:string

[Instance]
id: mged:differential_expression_software
instance_of: mged:SoftwareType
property_value: rdfs:comment "A software implementing a Higher Level Analysis protocol of type differential_expresssion." xsd:string
property_value: mged:unique_identifier "MO_350" xsd:string

[Instance]
id: mged:dilute
instance_of: mged:AtomicAction
property_value: rdfs:comment "Decreasing the concentration of solutes in a solution or suspension.  " xsd:string
property_value: mged:unique_identifier "MO_962" xsd:string

[Instance]
id: mged:diploid
instance_of: mged:Ploidy
property_value: mged:unique_identifier "MO_836" xsd:string
property_value: rdfs:comment "Describes a cell, nucleus or an organism with two copies of each chromosome." xsd:string

[Instance]
id: mged:disease_staging
instance_of: mged:BioMaterialCharacteristicCategory
property_value: rdfs:comment "The stage or progression of a disease in an organism. Includes pathological staging of cancers and other disease progression. " xsd:string
property_value: mged:unique_identifier "MO_792" xsd:string

[Instance]
id: mged:disease_state
instance_of: mged:BioMaterialCharacteristicCategory
property_value: mged:unique_identifier "MO_787" xsd:string
property_value: rdfs:comment "A descriptor for FactorValue where DiseaseState is compared.  " xsd:string

[Instance]
id: mged:disease_state_design
instance_of: mged:EpidemiologicalDesign
property_value: rdfs:comment "An experiment design type in which the pathological condition of a part, organ, or system of an organism is studied. The etiology  may be from infection, genetic defect, or environmental stress." xsd:string
property_value: mged:unique_identifier "MO_902" xsd:string

[Instance]
id: mged:disease_state_design
instance_of: mged:EpidemiologicalDesign
property_value: rdfs:comment "An experiment design type in which the pathological condition of a part, organ, or system of an organism is studied. The etiology  may be from infection, genetic defect, or environmental stress." xsd:string
property_value: mged:unique_identifier "MO_902" xsd:string

[Instance]
id: mged:displaced_feature_or_zone
instance_of: mged:DefectType
property_value: rdfs:comment " The Feature or Zone is displaced from its expected position, due to e.g. a bent spotting pin(s)." xsd:string
property_value: mged:unique_identifier "MO_959" xsd:string

[Instance]
id: mged:dissect
instance_of: mged:ExperimentalProtocolType
property_value: mged:unique_identifier "MO_374" xsd:string
property_value: rdfs:comment "The action of removing one or more organism parts." xsd:string

[Instance]
id: mged:dissect
instance_of: mged:ExperimentalProtocolType
property_value: mged:unique_identifier "MO_374" xsd:string
property_value: rdfs:comment "The action of removing one or more organism parts." xsd:string

[Instance]
id: mged:dl
instance_of: mged:VolumeUnit
property_value: rdfs:comment "deciliter, unit of volume" xsd:string
property_value: mged:unique_identifier "MO_624" xsd:string

[Instance]
id: mged:dose_response_design
instance_of: mged:PerturbationalDesign
property_value: rdfs:comment "A dose response design type examines the relationship between the size of the administered dose and the extent of the response of the organism(s). " xsd:string
property_value: mged:unique_identifier "MO_485" xsd:string

[Instance]
id: mged:double_stranded
instance_of: mged:StrandType
property_value: rdfs:comment "a nucleic acid consisting of two polynucleotide chains having antiparallel orientation and being bound together by hydrogen bonding between the chains.  This would apply to DNA and some RNA genomes, but not to rRNA or tRNA, etc." xsd:string
property_value: mged:unique_identifier "MO_828" xsd:string

[Instance]
id: mged:dpm
instance_of: mged:RadiationUnit
property_value: rdfs:comment "disintegrations per minute, unit of atom disintegrations per minute. dpm = (cpm - measured background)/efficiency. Efficiency is dependent on the radioisotope used and the instrument." xsd:string
property_value: mged:unique_identifier "MO_583" xsd:string

[Instance]
id: mged:ds_oligo
instance_of: mged:DeprecatedTerms
property_value: mged:deprecation_replacement_term mged:PhysicalBioSequenceType
property_value: mged:has_reason_for_deprecation mged:deleted_term
property_value: mged:deprecation_old_parent mged:PhysicalBioSequenceType
property_value: mged:deprecated_from_version mged:version_1.2.0
property_value: mged:deprecation_in_version "1.2.0" xsd:string
property_value: rdfs:comment " a double stranded oligonucleotide" xsd:string
property_value: mged:deprecation_reason "deleted_term" xsd:string
property_value: mged:unique_identifier "MO_344" xsd:string

[Instance]
id: mged:dye_swap_design
instance_of: mged:MethodologicalDesign
property_value: mged:synonym "flip dye" xsd:string
property_value: mged:unique_identifier "MO_858" xsd:string
property_value: mged:synonym "dye flip" xsd:string
property_value: rdfs:comment "An experiment design type where the label orientations are reversed.\nexact synonym: flip dye, dye flip" xsd:string

[Instance]
id: mged:dye_swap_merge
instance_of: mged:DataTransformationProtocolType
property_value: mged:unique_identifier "MO_448" xsd:string
property_value: rdfs:comment "A method of merging expression results from 2 dye-swap hybridizations on a Feature by Feature basis, with possible flagging if the results do not pass consistency checking criteria." xsd:string

[Instance]
id: mged:dye_swap_quality_control
instance_of: mged:QualityControlDescriptionType
property_value: rdfs:comment "Indicates that a dye swap was performed for some or all hybridizations within an experiment " xsd:string
property_value: mged:unique_identifier "MO_524" xsd:string

[Instance]
id: mged:dye_swap_replicate
instance_of: mged:ReplicateDescriptionType
property_value: rdfs:comment "One of a pair of replicate assays in which LabeledExtracts derived from the same BioMaterial used for both assays (e.g., a hybridization or a 2-D gel run) differ only in that the dyes used for labeling have been reversed, e.g., assay 1: A-Cy3 vs. B-Cy5, and assay 2: A-Cy5 vs. B-Cy3.  The purpose of using dye-swap replicate pairs is to assess or remove dye-specific biases from the combined experimental results." xsd:string
property_value: mged:unique_identifier "MO_901" xsd:string

[Instance]
id: mged:dye_swap_replicate_reduction
instance_of: mged:DerivedBioAssayType
property_value: mged:unique_identifier "MO_750" xsd:string
property_value: rdfs:comment "Results of data reduction involving computation of a representative value from identical reporters or features obtained from two, or more, hybridizations in which each LabelExtract is labeled with each of the labels or dyes.  Computation of a representative value for reporter X using data from Hybridizations 1 and 2, where LabeledExtract A is labeled with Cy3 (and LabeledExtract B is labeled with Cy5) in Hybridization 1 and LabeledExtract A is labeled with Cy5 (and LabeledExtract B is labeled with Cy3) in Hybridization 2. " xsd:string

[Instance]
id: mged:eVOC
instance_of: mged:OrganismPartDatabase
property_value: mged:unique_identifier "MO_684" xsd:string
property_value: rdfs:comment "Ontology of human terms that describe the sample source of human cDNA and SAGE libraries." xsd:string
property_value: mged:has_human_readable_URI "http://www.sanbi.ac.za/evoc/ontologies.html" xsd:string

[Instance]
id: mged:eVOC
instance_of: mged:OrganismPartDatabase
property_value: mged:unique_identifier "MO_684" xsd:string
property_value: rdfs:comment "Ontology of human terms that describe the sample source of human cDNA and SAGE libraries." xsd:string
property_value: mged:has_human_readable_URI "http://www.sanbi.ac.za/evoc/ontologies.html" xsd:string

[Instance]
id: mged:eVOC
instance_of: mged:OrganismPartDatabase
property_value: mged:unique_identifier "MO_684" xsd:string
property_value: rdfs:comment "Ontology of human terms that describe the sample source of human cDNA and SAGE libraries." xsd:string
property_value: mged:has_human_readable_URI "http://www.sanbi.ac.za/evoc/ontologies.html" xsd:string

[Instance]
id: mged:eVOC
instance_of: mged:OrganismPartDatabase
property_value: mged:unique_identifier "MO_684" xsd:string
property_value: rdfs:comment "Ontology of human terms that describe the sample source of human cDNA and SAGE libraries." xsd:string
property_value: mged:has_human_readable_URI "http://www.sanbi.ac.za/evoc/ontologies.html" xsd:string

[Instance]
id: mged:eclosion
instance_of: mged:InitialTimePoint
property_value: mged:unique_identifier "MO_876" xsd:string
property_value: rdfs:comment "Emergence of an adult insect from its pupa or cocoon." xsd:string

[Instance]
id: mged:egg_laying
instance_of: mged:InitialTimePoint
property_value: rdfs:comment "The point at which the egg(s) is laid by an organism." xsd:string
property_value: mged:unique_identifier "MO_767" xsd:string

[Instance]
id: mged:element_design
instance_of: mged:ExperimentalProtocolType
property_value: mged:unique_identifier "MO_523" xsd:string
property_value: rdfs:comment "protocol that describes how the features, reporters and composites were designed and or selected for inclusion in an array design " xsd:string

[Instance]
id: mged:ellipsoid_feature
instance_of: mged:FeatureShape
property_value: rdfs:comment "The shape of the feature on the array is circular or oval." xsd:string
property_value: mged:unique_identifier "MO_459" xsd:string

[Instance]
id: mged:environmental_history_design
instance_of: mged:EnvironmentalHistory
property_value: rdfs:comment "An environmental history design type is where some aspect of the organism's environmental history is studied, such as exposure to teratogen, radiation, climate etc." xsd:string
property_value: mged:unique_identifier "MO_698" xsd:string

[Instance]
id: mged:ex_vivo_design
instance_of: mged:MethodologicalDesign
property_value: rdfs:comment "An experiment design where all or part of an organism is removed and studied in vitro, e.g. part of a mouse is removed and cultured in vitro. A\ncell culture with an established cell line is an in vitro experiment." xsd:string
property_value: mged:unique_identifier "MO_808" xsd:string

[Instance]
id: mged:exemplar_mRNA
instance_of: mged:TheoreticalBioSequenceType
property_value: mged:unique_identifier "MO_621" xsd:string
property_value: rdfs:comment "An exemplar is a representative cDNA sequence for each gene. The exemplar\napproach is a method that usually involves some initial clustering into gene\ngroups and the subsequent selection of a representative from each gene\ngroup." xsd:string

[Instance]
id: mged:exon
instance_of: mged:DeprecatedTerms
property_value: mged:deprecation_old_parent mged:TheoreticalBioSequenceType
property_value: mged:deprecated_from_version mged:version_1.2.0
property_value: mged:deprecation_replacement_term mged:TheoreticalBioSequenceType
property_value: mged:has_reason_for_deprecation mged:deleted_term
property_value: mged:deprecation_in_version "1.2.0" xsd:string
property_value: mged:deprecation_reason "deleted_term" xsd:string
property_value: mged:unique_identifier "MO_619" xsd:string
property_value: rdfs:comment "sequence which represents regions of a transcript  that are joined to another exon during splicing" xsd:string

[Instance]
id: mged:experimental_and_computational_feature
instance_of: mged:SeqFeatureBasis
property_value: rdfs:comment "Sequence features derived by both computational and experimental methods." xsd:string
property_value: mged:unique_identifier "MO_516" xsd:string

[Instance]
id: mged:experimental_design_element_group_type
instance_of: mged:DesignElementGroupType
property_value: rdfs:comment "A grouping of DesignElements, Features/Reporters/Composite Sequences which are expected to detect a signal in the biomaterial." xsd:string
property_value: mged:unique_identifier "MO_755" xsd:string

[Instance]
id: mged:experimental_feature
instance_of: mged:SeqFeatureBasis
property_value: mged:unique_identifier "MO_452" xsd:string
property_value: rdfs:comment "An experimentally defined sequence feature." xsd:string

[Instance]
id: mged:extract
instance_of: mged:BioSampleType
property_value: mged:unique_identifier "MO_895" xsd:string
property_value: rdfs:comment "The BioSample immediately before labeling." xsd:string

[Instance]
id: mged:fM
instance_of: mged:ConcentrationUnit
property_value: rdfs:comment "femtomolar, concentration unit" xsd:string
property_value: mged:unique_identifier "MO_898" xsd:string

[Instance]
id: mged:family_history_design
instance_of: mged:EpidemiologicalDesign
property_value: rdfs:comment "A family history design type is where the family history such as traits, characteristics, susceptibility to disease is studied" xsd:string
property_value: mged:unique_identifier "MO_544" xsd:string

[Instance]
id: mged:father
instance_of: mged:FamilyRelationship
property_value: rdfs:comment "A male parent." xsd:string
property_value: mged:unique_identifier "MO_762" xsd:string

[Instance]
id: mged:feature_extraction
instance_of: mged:ExperimentalProtocolType
property_value: mged:synonym "image quantification" xsd:string
property_value: rdfs:comment "The process of obtaining quantifiable values from the scanned image of the \n    array. Exact synonyms: image analysis, image quantification" xsd:string
property_value: mged:synonym "image analysis" xsd:string
property_value: mged:unique_identifier "MO_928" xsd:string

[Instance]
id: mged:feature_extraction_software
instance_of: mged:SoftwareType
property_value: rdfs:comment "Software to create MeasuredBioAssayData from images.\nExact Synonym: image analysis software, image quantification software." xsd:string
property_value: mged:unique_identifier "MO_633" xsd:string
property_value: mged:synonym "image analysis software" xsd:string
property_value: mged:synonym "image quantification software" xsd:string

[Instance]
id: mged:feces
instance_of: mged:DeprecatedTerms
property_value: mged:deprecated_from_version mged:version_1.1.9
property_value: mged:has_reason_for_deprecation mged:deleted_term
property_value: mged:deprecation_old_parent mged:BioSourceType
property_value: mged:deprecation_replacement_term mged:BioSourceType
property_value: mged:deprecation_in_version "1.1.9" xsd:string
property_value: rdfs:comment "A biosource obtained as fecal matter." xsd:string
property_value: mged:deprecation_reason "deleted_term" xsd:string
property_value: mged:unique_identifier "MO_636" xsd:string

[Instance]
id: mged:feeding
instance_of: mged:DeliveryMethod
property_value: rdfs:comment "Delivery method where a compound/drug is administered in food or water." xsd:string
property_value: mged:unique_identifier "MO_993" xsd:string

[Instance]
id: mged:female
instance_of: mged:Sex
property_value: rdfs:comment "of, pertaining to, or designating the sex that only produces gametes that can be fertilized by male gametes." xsd:string
property_value: mged:unique_identifier "MO_506" xsd:string

[Instance]
id: mged:fertilization
instance_of: mged:InitialTimePoint
property_value: rdfs:comment "The union of gametes of opposite sexes during the process of sexual reproduction to form a zygote. (from the GO)" xsd:string
property_value: mged:unique_identifier "MO_701" xsd:string

[Instance]
id: mged:fg
instance_of: mged:MassUnit
property_value: rdfs:comment "femtogram, unit of mass" xsd:string
property_value: mged:unique_identifier "MO_732" xsd:string

[Instance]
id: mged:filtered_data
instance_of: mged:DerivedBioAssayType
property_value: mged:unique_identifier "MO_625" xsd:string
property_value: rdfs:comment "Data from which a subset has been removed based on some criteria, e.g. data below an intensity threshhold." xsd:string

[Instance]
id: mged:fl
instance_of: mged:VolumeUnit
property_value: mged:unique_identifier "MO_721" xsd:string
property_value: rdfs:comment "femtoliter, unit of volume" xsd:string

[Instance]
id: mged:flag_filter
instance_of: mged:DataTransformationProtocolType
property_value: rdfs:comment "transformation method that involves removal of values in a data set based \n    on visual or computed flags (e.g. the GenePix feature_extraction software \n    standard flags). This includes low-intensity filtering methods, where the \n    flag indicates low intensity values in the data set (for microarrays and \n    gels the threshold for exclusion is usually based on some estimation of \n    local or global background intensity; for mass spectrometry and NMR, it is \n    usually based on the signal-to-noise ratio in the spectrum)." xsd:string

[Instance]
id: mged:flip-dye_consistency
instance_of: mged:NormalizationDescriptionType
property_value: mged:deprecated_from_version mged:version_1.2.0
property_value: mged:was_replaced_by mged:dye_swap_merge
property_value: mged:has_reason_for_deprecation mged:replaced_term
property_value: rdfs:comment "A method of checking the consistency of expression levels between a pair of features from  flip-dye hybridizations by studying the distribution of the logarithm of ratios of intensity  ratios from the two spots." xsd:string
property_value: mged:unique_identifier "MO_907" xsd:string

[Instance]
id: mged:float
instance_of: mged:DataType
property_value: rdfs:comment "A value which is a floating point number (i.e. real number) with arbitrary precision (e.g. 2.34)." xsd:string
property_value: mged:unique_identifier "MO_860" xsd:string

[Instance]
id: mged:fmol
instance_of: mged:QuantityUnit
property_value: mged:unique_identifier "MO_689" xsd:string
property_value: rdfs:comment "femtomole, unit of quantity" xsd:string

[Instance]
id: mged:forward
instance_of: mged:StrandType
property_value: rdfs:comment "the forward strand\nexact synonym: +" xsd:string
property_value: mged:synonym "+" xsd:string
property_value: mged:unique_identifier "MO_820" xsd:string

[Instance]
id: mged:fractionate
instance_of: mged:ExperimentalProtocolType
property_value: rdfs:comment "The action of separating a BioMaterial into one or more fractions e.g. differential centrifugation or FACS when used for cell sorting (see purify)." xsd:string
property_value: mged:unique_identifier "MO_872" xsd:string

[Instance]
id: mged:fractionate
instance_of: mged:ExperimentalProtocolType
property_value: rdfs:comment "The action of separating a BioMaterial into one or more fractions e.g. differential centrifugation or FACS when used for cell sorting (see purify)." xsd:string
property_value: mged:unique_identifier "MO_872" xsd:string

[Instance]
id: mged:freeze_dried_sample
instance_of: mged:BioSourceType
property_value: rdfs:comment "A biomaterial that has been lyophilized or dried by freezing under a vacuum." xsd:string
property_value: mged:unique_identifier "MO_589" xsd:string

[Instance]
id: mged:french_railway_distance
instance_of: mged:NodeValueType
property_value: rdfs:comment "The \"French railway distance\" is based on the fact that (at least in the past) most of the railways in France headed straight to Paris. Thus, the French railway distance between two points is the usual distance if the straight line through them passes to a designated &#210;Paris&#211; point, or is the sum of their distances to the &#210;Paris&#211; point otherwise." xsd:string
property_value: mged:unique_identifier "MO_964" xsd:string

[Instance]
id: mged:fresh_sample
instance_of: mged:BioSourceType
property_value: mged:unique_identifier "MO_730" xsd:string
property_value: rdfs:comment "A sample freshly obtained from the organism(s). E.g. a liver freshly removed from a rat." xsd:string

[Instance]
id: mged:frozen_sample
instance_of: mged:BioSourceType
property_value: rdfs:comment "A biomaterial obtained frozen" xsd:string
property_value: mged:unique_identifier "MO_610" xsd:string

[Instance]
id: mged:frozen_storage
instance_of: mged:PreservationType
property_value: rdfs:comment "Storage where the thing stored is stored below 0 degrees celsius." xsd:string
property_value: mged:unique_identifier "MO_481" xsd:string

[Instance]
id: mged:function_record
instance_of: mged:DatabaseEntryType
property_value: mged:unique_identifier "MO_538" xsd:string
property_value: rdfs:comment "a record which identifies and describes the function of a gene product, e.g. E.C. record" xsd:string

[Instance]
id: mged:funder
instance_of: mged:Roles
property_value: mged:unique_identifier "MO_520" xsd:string
property_value: rdfs:comment "Contact which provides funding for experiments." xsd:string

[Instance]
id: mged:g
instance_of: mged:MassUnit
property_value: rdfs:comment "gram, unit of mass" xsd:string
property_value: mged:unique_identifier "MO_825" xsd:string

[Instance]
id: mged:g_per_L
instance_of: mged:ConcentrationUnit
property_value: mged:unique_identifier "MO_805" xsd:string
property_value: rdfs:comment "grams per liter, concentration unit" xsd:string

[Instance]
id: mged:gene
instance_of: mged:DeprecatedTerms
property_value: mged:has_reason_for_deprecation mged:deleted_term
property_value: mged:deprecated_from_version mged:version_1.2.0
property_value: mged:deprecation_old_parent mged:TheoreticalBioSequenceType
property_value: mged:deprecation_replacement_term mged:TheoreticalBioSequenceType
property_value: rdfs:comment "genomic sequence which corresponds to the primary transcript and uses the furthest 5' and 3'  UTR's, doesn't include non transcribed regulatory regions. Can be experimentally or computationally determined" xsd:string
property_value: mged:deprecation_in_version "1.2.0" xsd:string
property_value: mged:deprecation_reason "deleted_term" xsd:string
property_value: mged:unique_identifier "MO_503" xsd:string

[Instance]
id: mged:gene_fragment
instance_of: mged:TheoreticalBioSequenceType
property_value: mged:unique_identifier "MO_853" xsd:string
property_value: rdfs:comment "sequence of part of a gene, which is missing one or both ends" xsd:string

[Instance]
id: mged:gene_knock_in
instance_of: mged:GeneticModification
property_value: mged:unique_identifier "MO_437" xsd:string
property_value: rdfs:comment "A modification whereby a functional gene, or a functional part of a gene, is inserted into an organism', e.g. by recombination, P-element insertion." xsd:string

[Instance]
id: mged:gene_knock_out
instance_of: mged:GeneticModification
property_value: rdfs:comment "The modification of an organism that renders a gene non-functional e.g. due to a point mutation, or the removal of all, or part of, the gene using recombinant methods." xsd:string
property_value: mged:unique_identifier "MO_771" xsd:string

[Instance]
id: mged:genetic_modification
instance_of: mged:ComplexAction
property_value: mged:unique_identifier "MO_927" xsd:string
property_value: rdfs:comment "An action whereby an organism(s) has had genetic material removed, added, or rearranged." xsd:string

[Instance]
id: mged:genetic_modification
instance_of: mged:ComplexAction
property_value: mged:unique_identifier "MO_927" xsd:string
property_value: rdfs:comment "An action whereby an organism(s) has had genetic material removed, added, or rearranged." xsd:string

[Instance]
id: mged:genetic_modification_design
instance_of: mged:PerturbationalDesign
property_value: rdfs:comment "A genetic modification design type is where an organism(s) has had genetic material removed, rearranged, mutagenized or added, such as knock out" xsd:string
property_value: mged:unique_identifier "MO_447" xsd:string

[Instance]
id: mged:genetic_variation
instance_of: mged:DeprecatedTerms
property_value: mged:deprecated_from_version mged:version_1.1.8
property_value: mged:deprecation_old_parent mged:BioMaterialCharacteristicCategory
property_value: mged:deprecation_replacement_term mged:BioMaterialCharacteristicCategory
property_value: mged:has_reason_for_deprecation mged:deleted_term
property_value: mged:deprecation_reason "deleted_term" xsd:string
property_value: rdfs:comment "A descriptor for FactorValue where GeneticVariation is compared.  " xsd:string
property_value: mged:deprecation_in_version "1.1.8" xsd:string
property_value: mged:unique_identifier "MO_557" xsd:string

[Instance]
id: mged:genomic_DNA
instance_of: mged:MaterialType
property_value: mged:unique_identifier "MO_599" xsd:string
property_value: rdfs:comment "high molecular weight DNA" xsd:string

[Instance]
id: mged:genomic_region_amplification
instance_of: mged:ChromosomalAberrationClassification
property_value: rdfs:comment "increment in copy number of a genomic region, includes gene amplification, genomic amplification, and DNA amplification" xsd:string
property_value: mged:unique_identifier "MO_609" xsd:string

[Instance]
id: mged:genotyping_design
instance_of: mged:BioMolecularAnnotation
property_value: mged:unique_identifier "MO_560" xsd:string
property_value: rdfs:comment "A genotyping experiment design type classifies an individual or group of individuals on the basis of alleles, haplotypes, SNP's. " xsd:string

[Instance]
id: mged:germination
instance_of: mged:InitialTimePoint
property_value: mged:unique_identifier "MO_590" xsd:string
property_value: rdfs:comment "The physiological and developmental changes by a seed, spore, pollen grain (microspore), or zygote that occur after release from dormancy, and encompassing events prior to and including the first visible indications of growth (from the GO)." xsd:string

[Instance]
id: mged:glass
instance_of: mged:SubstrateType
property_value: rdfs:comment "The array is made on a glass slide." xsd:string
property_value: mged:unique_identifier "MO_742" xsd:string

[Instance]
id: mged:gram_percent
instance_of: mged:ConcentrationUnit
property_value: mged:unique_identifier "MO_582" xsd:string
property_value: rdfs:comment "grams per deciliter, concentration unit" xsd:string

[Instance]
id: mged:granddaughter
instance_of: mged:FamilyRelationship
property_value: mged:unique_identifier "MO_703" xsd:string
property_value: rdfs:comment "A daughter of one's son or daughter." xsd:string

[Instance]
id: mged:grandfather
instance_of: mged:FamilyRelationship
property_value: mged:unique_identifier "MO_478" xsd:string
property_value: rdfs:comment "The father of one's father or mother." xsd:string

[Instance]
id: mged:grandmother
instance_of: mged:FamilyRelationship
property_value: rdfs:comment "The mother of one's father or mother." xsd:string
property_value: mged:unique_identifier "MO_924" xsd:string

[Instance]
id: mged:grandson
instance_of: mged:FamilyRelationship
property_value: mged:unique_identifier "MO_831" xsd:string
property_value: rdfs:comment "A son of one's son or daughter." xsd:string

[Instance]
id: mged:grow
instance_of: mged:ExperimentalProtocolType
property_value: rdfs:comment "A ComplexAction or ProtocolType describing growth of an organism or cell culture." xsd:string
property_value: mged:unique_identifier "MO_758" xsd:string

[Instance]
id: mged:grow
instance_of: mged:ExperimentalProtocolType
property_value: rdfs:comment "A ComplexAction or ProtocolType describing growth of an organism or cell culture." xsd:string
property_value: mged:unique_identifier "MO_758" xsd:string

[Instance]
id: mged:growth_condition_design
instance_of: mged:PerturbationalDesign
property_value: rdfs:comment "A growth condition experiment design type is where some part of the growth condition is changed for the purposes of the experiment, examples of growth conditions changed are media, temperature, humidity, light, nutrients. " xsd:string
property_value: mged:unique_identifier "MO_588" xsd:string

[Instance]
id: mged:half-life
instance_of: mged:TimeUnitOther
property_value: mged:unique_identifier "MO_595" xsd:string
property_value: rdfs:comment "t1/2. The period over which the activity or concentration of a specified chemical or element falls to half its original activity or concentration. Typically applied to the half-life of radioactive atoms but also applicable to any other situation where the population is of molecules of diminishing concentration or activity." xsd:string

[Instance]
id: mged:haploid
instance_of: mged:Ploidy
property_value: rdfs:comment "Describes a cell, nucleus or an organism with one copy of each chromosome.\n" xsd:string
property_value: mged:unique_identifier "MO_719" xsd:string

[Instance]
id: mged:hardware_manufacturer
instance_of: mged:Roles
property_value: rdfs:comment "Person or organization that manufactured the hardware." xsd:string
property_value: mged:unique_identifier "MO_763" xsd:string

[Instance]
id: mged:hardware_variation_design
instance_of: mged:MethodologicalDesign
property_value: rdfs:comment "A hardware variation experiment design type compares different types of hardware for performance, reproducibility, accuracy and precision." xsd:string
property_value: mged:unique_identifier "MO_734" xsd:string

[Instance]
id: mged:harvest
instance_of: mged:ComplexAction
property_value: rdfs:comment "The process of harvesting cells from culture." xsd:string
property_value: mged:unique_identifier "MO_982" xsd:string

[Instance]
id: mged:harvest
instance_of: mged:ComplexAction
property_value: rdfs:comment "The process of harvesting cells from culture." xsd:string
property_value: mged:unique_identifier "MO_982" xsd:string

[Instance]
id: mged:hatching
instance_of: mged:InitialTimePoint
property_value: rdfs:comment "The point at which an organism emerges from an egg." xsd:string
property_value: mged:unique_identifier "MO_745" xsd:string

[Instance]
id: mged:heating_block
instance_of: mged:HardwareType
property_value: rdfs:comment "A device for controlling temperature." xsd:string
property_value: mged:unique_identifier "MO_663" xsd:string

[Instance]
id: mged:heavy_background
instance_of: mged:DefectType
property_value: mged:unique_identifier "MO_571" xsd:string
property_value: rdfs:comment "The Zone is excluded due to smearing, streaking, or dense background in the Zone." xsd:string

[Instance]
id: mged:hermaphrodite
instance_of: mged:Sex
property_value: rdfs:comment "an organism with both male and female sexual organs in one individual\nsynonym: intersex" xsd:string
property_value: mged:synonym "intersex" xsd:string
property_value: mged:unique_identifier "MO_356" xsd:string

[Instance]
id: mged:histological_slide_preparation
instance_of: mged:ComplexAction
property_value: mged:unique_identifier "MO_611" xsd:string
property_value: rdfs:comment "The action of preparing a slide for the microscopical examination of organism parts or cell types." xsd:string

[Instance]
id: mged:histological_slide_preparation
instance_of: mged:ComplexAction
property_value: mged:unique_identifier "MO_611" xsd:string
property_value: rdfs:comment "The action of preparing a slide for the microscopical examination of organism parts or cell types." xsd:string

[Instance]
id: mged:homogenizer
instance_of: mged:HardwareType
property_value: mged:unique_identifier "MO_714" xsd:string
property_value: rdfs:comment "An instrument which fragments tissues or other biomaterials." xsd:string

[Instance]
id: mged:hours
instance_of: mged:TimeUnit
property_value: mged:unique_identifier "MO_486" xsd:string
property_value: mged:synonym "h" xsd:string
property_value: rdfs:comment "60 minutes, time unit" xsd:string

[Instance]
id: mged:hybridization
instance_of: mged:ComplexAction
property_value: mged:unique_identifier "MO_884" xsd:string
property_value: rdfs:comment "The process of incubating one or more labeled extracts with an array." xsd:string

[Instance]
id: mged:hybridization
instance_of: mged:ComplexAction
property_value: mged:unique_identifier "MO_884" xsd:string
property_value: rdfs:comment "The process of incubating one or more labeled extracts with an array." xsd:string

[Instance]
id: mged:hybridization_chamber
instance_of: mged:HardwareType
property_value: rdfs:comment "A chamber in which the hybridization is performed which maintains constant conditions." xsd:string
property_value: mged:unique_identifier "MO_563" xsd:string

[Instance]
id: mged:hybridization_station
instance_of: mged:HardwareType
property_value: rdfs:comment "An instrument which controls hybridization conditions, into which a hybridization chamber may fit." xsd:string
property_value: mged:unique_identifier "MO_497" xsd:string

[Instance]
id: mged:image_acquisition
instance_of: mged:ExperimentalProtocolType
property_value: rdfs:comment "The process of generating an image from the array." xsd:string
property_value: mged:unique_identifier "MO_929" xsd:string

[Instance]
id: mged:image_acquisition_software
instance_of: mged:SoftwareType
property_value: mged:unique_identifier "MO_1003" xsd:string
property_value: mged:synonym "scanning software" xsd:string
property_value: rdfs:comment "Software to control a scanner and manipulate and save images.\nExact synonym: scanning software" xsd:string

[Instance]
id: mged:image_record
instance_of: mged:DatabaseEntryType
property_value: mged:unique_identifier "MO_691" xsd:string
property_value: rdfs:comment "A record which describes and identifies an image, e.g. an image from the mouse atlas" xsd:string

[Instance]
id: mged:imprinting_design
instance_of: mged:BiologicalProperty
property_value: rdfs:comment "An experiment design type where differences in genetic imprinting of maternally- and paternally-inherited chromosomes (e.g., due to in vivo differences in chemical modification and/or chromatin structure) are compared." xsd:string
property_value: mged:unique_identifier "MO_914" xsd:string

[Instance]
id: mged:in_medium
instance_of: mged:DeliveryMethod
property_value: mged:unique_identifier "MO_733" xsd:string
property_value: rdfs:comment "Delivery method where a compound/drug is administered in the culture medium (e.g., for in vitro treatment)." xsd:string

[Instance]
id: mged:in_situ_oligo_features
instance_of: mged:TechnologyType
property_value: rdfs:comment "The TechnologyType of the FeatureGroup  is manufactured using in situ methods such as photolithography (e.g. Affymetrix) or chemical synthesis (e.g. Agilent)" xsd:string
property_value: mged:unique_identifier "MO_514" xsd:string

[Instance]
id: mged:in_vitro_design
instance_of: mged:MethodologicalDesign
property_value: rdfs:comment "An experiment done in a test tube or a culture dish, e.g. \nA bacterial invasion assay in an established cell culture." xsd:string
property_value: mged:unique_identifier "MO_347" xsd:string

[Instance]
id: mged:in_vivo_design
instance_of: mged:MethodologicalDesign
property_value: rdfs:comment "An experiment design that is conducted entirely in a living organism, e.g. a compound treatment in a mouse model." xsd:string
property_value: mged:unique_identifier "MO_454" xsd:string

[Instance]
id: mged:inconclusive
instance_of: mged:Result
property_value: mged:unique_identifier "MO_744" xsd:string
property_value: rdfs:comment "a result which can not be interpreted as positive or negative" xsd:string

[Instance]
id: mged:incubate
instance_of: mged:ComplexAction
property_value: mged:unique_identifier "MO_965" xsd:string
property_value: rdfs:comment "The procedure of placing a physical object under specified conditions e.g. time, temperature, humidity for the purposes of obtaining a different product." xsd:string

[Instance]
id: mged:incubate
instance_of: mged:ComplexAction
property_value: mged:unique_identifier "MO_965" xsd:string
property_value: rdfs:comment "The procedure of placing a physical object under specified conditions e.g. time, temperature, humidity for the purposes of obtaining a different product." xsd:string

[Instance]
id: mged:individual
instance_of: mged:BioMaterialCharacteristicCategory
property_value: mged:unique_identifier "MO_639" xsd:string
property_value: rdfs:comment "A descriptor for FactorValue where BioSources are compared. " xsd:string

[Instance]
id: mged:individual_genetic_characteristic
instance_of: mged:BioMaterialCharacteristicCategory
property_value: rdfs:comment "A descriptor for FactorValue where IndividualGeneticCharacteristic is compared.  " xsd:string
property_value: mged:unique_identifier "MO_722" xsd:string

[Instance]
id: mged:individual_genetic_characteristics_design
instance_of: mged:BiologicalProperty
property_value: rdfs:comment "An experiment design type where genotype, haplotype, or other individual genetic characteristics are compared." xsd:string
property_value: mged:unique_identifier "MO_527" xsd:string

[Instance]
id: mged:induced_mutation
instance_of: mged:GeneticModification
property_value: mged:unique_identifier "MO_564" xsd:string
property_value: rdfs:comment "The modification of the genetic material (either coding or non-coding) of an organism by mutagenic compounds or irradiation." xsd:string

[Instance]
id: mged:infect
instance_of: mged:DeprecatedTerms
property_value: mged:replaced_with_term mged:inoculate
property_value: mged:was_replaced_by mged:inoculate
property_value: mged:deprecated_from_version mged:version_1.3.0
property_value: mged:deprecation_old_parent mged:ComplexAction
property_value: mged:deprecation_old_parent mged:ExperimentalProtocolType
property_value: mged:has_reason_for_deprecation mged:replaced_term
property_value: mged:unique_identifier "MO_616" xsd:string
property_value: mged:deprecation_reason "replaced_term" xsd:string
property_value: mged:deprecation_in_version "1.3.0" xsd:string
property_value: rdfs:comment "The organism (or organism part) has been exposed to a virus or pathogen. " xsd:string

[Instance]
id: mged:injury_design
instance_of: mged:PerturbationalDesign
property_value: mged:unique_identifier "MO_726" xsd:string
property_value: rdfs:comment "An injury experiment design type is where the response of an organism(s) to injury or damage is studied." xsd:string

[Instance]
id: mged:innate_behavior_design
instance_of: mged:BiologicalProperty
property_value: mged:unique_identifier "MO_355" xsd:string
property_value: rdfs:comment "A design in which the innate behavior of the organism is examined, e.g. \n    path finding in bees." xsd:string

[Instance]
id: mged:inoculate
instance_of: mged:ExperimentalProtocolType
property_value: mged:unique_identifier "MO_559" xsd:string
property_value: rdfs:comment "The process of introducing a foreign agent such as serum, vaccine, antigenic substance or organism." xsd:string
property_value: mged:synonym "infect" xsd:string

[Instance]
id: mged:inoculate
instance_of: mged:ExperimentalProtocolType
property_value: mged:unique_identifier "MO_559" xsd:string
property_value: rdfs:comment "The process of introducing a foreign agent such as serum, vaccine, antigenic substance or organism." xsd:string
property_value: mged:synonym "infect" xsd:string

[Instance]
id: mged:institution
instance_of: mged:Roles
property_value: rdfs:comment "A contact's affiliation, e.g. university, research institute or business." xsd:string
property_value: mged:unique_identifier "MO_601" xsd:string

[Instance]
id: mged:integer
instance_of: mged:DataType
property_value: mged:unique_identifier "MO_435" xsd:string
property_value: rdfs:comment "A value which is a whole number (e.g. 10)." xsd:string

[Instance]
id: mged:intergenic
instance_of: mged:DeprecatedTerms
property_value: mged:deprecation_old_parent mged:TheoreticalBioSequenceType
property_value: mged:deprecation_replacement_term mged:TheoreticalBioSequenceType
property_value: mged:has_reason_for_deprecation mged:deleted_term
property_value: mged:deprecated_from_version mged:version_1.2.0
property_value: mged:deprecation_in_version "1.2.0" xsd:string
property_value: mged:unique_identifier "MO_463" xsd:string
property_value: rdfs:comment "sequence from the region between genes" xsd:string
property_value: mged:deprecation_reason "deleted_term" xsd:string

[Instance]
id: mged:intramuscular_injection
instance_of: mged:DeliveryMethod
property_value: mged:unique_identifier "MO_617" xsd:string
property_value: rdfs:comment "Delivery method for a compound or drug where the substance is administered via an injection into the muscle." xsd:string

[Instance]
id: mged:intraperitoneal_injection
instance_of: mged:DeliveryMethod
property_value: rdfs:comment "A delivery method for compound or drug whereby the substance is administered via the peritoneum." xsd:string
property_value: mged:unique_identifier "MO_473" xsd:string

[Instance]
id: mged:intravenous
instance_of: mged:DeliveryMethod
property_value: rdfs:comment "delivery method whereby a compound or drug is administered via a vein" xsd:string
property_value: mged:unique_identifier "MO_432" xsd:string

[Instance]
id: mged:intron
instance_of: mged:DeprecatedTerms
property_value: mged:deprecation_replacement_term mged:TheoreticalBioSequenceType
property_value: mged:deprecated_from_version mged:version_1.2.0
property_value: mged:deprecation_old_parent mged:TheoreticalBioSequenceType
property_value: mged:has_reason_for_deprecation mged:deleted_term
property_value: mged:unique_identifier "MO_709" xsd:string
property_value: mged:deprecation_in_version "1.2.0" xsd:string
property_value: mged:deprecation_reason "deleted_term" xsd:string
property_value: rdfs:comment "sequence spliced out from a transcript" xsd:string

[Instance]
id: mged:investigator
instance_of: mged:Roles
property_value: mged:unique_identifier "MO_769" xsd:string
property_value: rdfs:comment "Person who contributed to the study." xsd:string

[Instance]
id: mged:irradiate
instance_of: mged:ExperimentalProtocolType
property_value: mged:unique_identifier "MO_770" xsd:string
property_value: rdfs:comment "treatment of a biomaterial with radiation e.g. electromagnetic radiation" xsd:string

[Instance]
id: mged:irradiate
instance_of: mged:ExperimentalProtocolType
property_value: mged:unique_identifier "MO_770" xsd:string
property_value: rdfs:comment "treatment of a biomaterial with radiation e.g. electromagnetic radiation" xsd:string

[Instance]
id: mged:irregular_shape
instance_of: mged:DefectType
property_value: mged:unique_identifier "MO_669" xsd:string
property_value: rdfs:comment "The perimeter of the spotted DNA on the slide is irregular." xsd:string

[Instance]
id: mged:is_contaminated
instance_of: mged:WarningType
property_value: rdfs:comment "The clone used to originate the BioSequence which corresponds to the reporter was found to be contaminated (e.g. well-well contamination) on examination." xsd:string
property_value: mged:unique_identifier "MO_489" xsd:string

[Instance]
id: mged:is_expressed_design
instance_of: mged:BiologicalProperty
property_value: rdfs:comment "A design aimed at identifying genes expressed in biomaterials of interest. " xsd:string
property_value: mged:unique_identifier "MO_487" xsd:string

[Instance]
id: mged:iterative_mean_log_centering
instance_of: mged:NormalizationDescriptionType
property_value: rdfs:comment "A method of re-scaling ratio data by iteratively subtracting the mean log base 2 ratio from each log2(ratio). This adjusts the mean log2(ratio) to zero. In each subsequent iteration, outliers are removed based on user-specified criteria, the mean log(2) ratio is recalculated based on the remaining data, and the entire data set is rescaled again. This continues until the mean log(2) ratio converges." xsd:string
property_value: mged:unique_identifier "MO_957" xsd:string

[Instance]
id: mged:jackknife_Pearson_correlation
instance_of: mged:NodeValueType
property_value: rdfs:comment "The jackknife Pearson correlation is the lowest Pearson correlation between two data series where one pair of values in the data series are omitted." xsd:string
property_value: mged:unique_identifier "MO_784" xsd:string

[Instance]
id: mged:journal_article
instance_of: mged:PublicationType
property_value: mged:unique_identifier "MO_430" xsd:string
property_value: rdfs:comment "A article published in a print or online journal having an ISSN." xsd:string

[Instance]
id: mged:kat_per_L
instance_of: mged:ConcentrationUnitOther
property_value: mged:unique_identifier "MO_869" xsd:string
property_value: rdfs:comment "katal per liter, catalytic-activity concentration unit" xsd:string

[Instance]
id: mged:kg
instance_of: mged:MassUnit
property_value: mged:unique_identifier "MO_846" xsd:string
property_value: rdfs:comment "kilogram, 1000 grams, unit of mass" xsd:string

[Instance]
id: mged:kg_per_m2
instance_of: mged:OtherUnit
property_value: rdfs:comment "The mass of an object in kilograms divided by the surface area in meters squared. Also known as the Body Mass Index (when applied to a person) which is a measure of leaness/obesity. Exact synonym:kg/m2" xsd:string
property_value: mged:synonym "kg/m2" xsd:string
property_value: mged:unique_identifier "MO_658" xsd:string

[Instance]
id: mged:labeling
instance_of: mged:ExperimentalProtocolType
property_value: rdfs:comment "The procedure of labeling a biosample." xsd:string
property_value: mged:unique_identifier "MO_471" xsd:string

[Instance]
id: mged:labeling
instance_of: mged:ExperimentalProtocolType
property_value: rdfs:comment "The procedure of labeling a biosample." xsd:string
property_value: mged:unique_identifier "MO_471" xsd:string

[Instance]
id: mged:laser_ablation_mark
instance_of: mged:FiducialType
property_value: mged:unique_identifier "MO_910" xsd:string
property_value: rdfs:comment "mark made on slide using a laser which is used as a point of reference for orientation (fiducial)" xsd:string

[Instance]
id: mged:light_duration
instance_of: mged:EnvironmentalFactorCategory
property_value: mged:synonym "photoperiod" xsd:string
property_value: mged:unique_identifier "MO_604" xsd:string
property_value: rdfs:comment "The length of the light period that a sample is subjected to.\nExact synonym:photoperiod" xsd:string

[Instance]
id: mged:light_intensity
instance_of: mged:EnvironmentalFactorCategory
property_value: mged:unique_identifier "MO_517" xsd:string
property_value: rdfs:comment "The amount of light actually striking the surface of samples which are being assayed.  It has a unit association as well, usually uEinstein /m2 /min or uEinstein /m2/s." xsd:string

[Instance]
id: mged:linear_amplification
instance_of: mged:ExperimentalProtocolType
property_value: mged:synonym "Eberwine procedure" xsd:string
property_value: mged:unique_identifier "MO_997" xsd:string
property_value: rdfs:comment "Amplification of nucleic acid sequence by making many copies off the same template.  An example is the use of the T7 promoter for amplification by transcribing many RNA copies.\nnon exact synonym: Eberwine procedure" xsd:string

[Instance]
id: mged:linear_amplification
instance_of: mged:ExperimentalProtocolType
property_value: mged:synonym "Eberwine procedure" xsd:string
property_value: mged:unique_identifier "MO_997" xsd:string
property_value: rdfs:comment "Amplification of nucleic acid sequence by making many copies off the same template.  An example is the use of the T7 promoter for amplification by transcribing many RNA copies.\nnon exact synonym: Eberwine procedure" xsd:string

[Instance]
id: mged:linear_regression_normalization
instance_of: mged:NormalizationDescriptionType
property_value: rdfs:comment "A method to re-scale paired-assay data from one data set relative to the other, based on regression of the values in the one set to those in the other, where the latter utilizes either all values in the data set, or an appropriate subset of these (e.g. special control Features on a microarray, or 2DE spots containing constitutively expressed proteins). The slope of the regression line is used to re-scale all the values in the data set being normalized. This single parameter method assumes that there is a linear relationship between the data sets. A similar approach could be employed to re-scale data from a standalone assay to another standalone (baseline) assay." xsd:string
property_value: mged:unique_identifier "MO_823" xsd:string

[Instance]
id: mged:linear_scale
instance_of: mged:Scale
property_value: mged:unique_identifier "MO_751" xsd:string
property_value: rdfs:comment "The scale is a standard base 10, non logarithmic scale." xsd:string

[Instance]
id: mged:linlog_normalization
instance_of: mged:NormalizationDescriptionType
property_value: mged:deprecated_from_version mged:version_1.2.0
property_value: mged:has_reason_for_deprecation mged:replaced_term
property_value: rdfs:comment "A transformation method in which low intensities are linearly scaled while high intensities are logarithmically scaled. The transition point is determined by minimizing the absolute deviation of the variance of log ratios." xsd:string
property_value: mged:unique_identifier "MO_956" xsd:string

[Instance]
id: mged:linlog_transformation
instance_of: mged:DataTransformationProtocolType
property_value: mged:unique_identifier "MO_845" xsd:string
property_value: rdfs:comment "A transformation method in which low intensities are linearly scaled while high intensities are logarithmically scaled. The transition point is determined by minimizing the absolute deviation of the variance of log ratios." xsd:string

[Instance]
id: mged:liquid
instance_of: mged:Media
property_value: rdfs:comment "media type, usually some sort of broth" xsd:string
property_value: mged:unique_identifier "MO_715" xsd:string

[Instance]
id: mged:liquid_handler
instance_of: mged:HardwareType
property_value: rdfs:comment "Hardware for automated liquid transfer and handling." xsd:string
property_value: mged:unique_identifier "MO_868" xsd:string

[Instance]
id: mged:liquid_handler_software
instance_of: mged:SoftwareType
property_value: mged:unique_identifier "MO_761" xsd:string
property_value: rdfs:comment "Software used to control automated liquid handler." xsd:string

[Instance]
id: mged:list_of_booleans
instance_of: mged:DataType
property_value: mged:unique_identifier "MO_712" xsd:string
property_value: rdfs:comment "An ordered, finite set of booleans." xsd:string

[Instance]
id: mged:list_of_floats
instance_of: mged:DataType
property_value: mged:unique_identifier "MO_760" xsd:string
property_value: rdfs:comment "An ordered, finite set of floats." xsd:string

[Instance]
id: mged:list_of_integers
instance_of: mged:DataType
property_value: mged:unique_identifier "MO_891" xsd:string
property_value: rdfs:comment "An ordered, finite set of integers." xsd:string

[Instance]
id: mged:list_of_negative_floats
instance_of: mged:DataType
property_value: rdfs:comment "An ordered, finite set of negative floats." xsd:string
property_value: mged:unique_identifier "MO_851" xsd:string

[Instance]
id: mged:list_of_negative_integers
instance_of: mged:DataType
property_value: mged:unique_identifier "MO_900" xsd:string
property_value: rdfs:comment "An ordered, finite set of negative integers." xsd:string

[Instance]
id: mged:list_of_nonnegative_floats
instance_of: mged:DataType
property_value: mged:unique_identifier "MO_360" xsd:string
property_value: rdfs:comment "An ordered, finite set of nonnegative floats." xsd:string

[Instance]
id: mged:list_of_nonnegative_integers
instance_of: mged:DataType
property_value: rdfs:comment "An ordered, finite set of nonnegative integers." xsd:string
property_value: mged:unique_identifier "MO_973" xsd:string

[Instance]
id: mged:list_of_nonpositive_floats
instance_of: mged:DataType
property_value: rdfs:comment "An ordered, finite set of nonpositive floats." xsd:string
property_value: mged:unique_identifier "MO_1000" xsd:string

[Instance]
id: mged:list_of_nonpositive_integers
instance_of: mged:DataType
property_value: rdfs:comment "An ordered, finite set of nonpositive integers." xsd:string
property_value: mged:unique_identifier "MO_804" xsd:string

[Instance]
id: mged:list_of_positive_floats
instance_of: mged:DataType
property_value: mged:unique_identifier "MO_777" xsd:string
property_value: rdfs:comment "An ordered, finite set of positive floats." xsd:string

[Instance]
id: mged:list_of_positive_integers
instance_of: mged:DataType
property_value: rdfs:comment "An ordered, finite set of positive integers." xsd:string
property_value: mged:unique_identifier "MO_873" xsd:string

[Instance]
id: mged:list_of_strings
instance_of: mged:DataType
property_value: rdfs:comment "An ordered, finite set of strings." xsd:string
property_value: mged:unique_identifier "MO_800" xsd:string

[Instance]
id: mged:loess_global_normalization
instance_of: mged:DataTransformationProtocolType
property_value: rdfs:comment "Application of a normalization of type loess_normalization where the same normalization curve is used for all points in the data set; e.g. Features on an array, picked spots on a gel, or measured metabolites in a sample." xsd:string
property_value: mged:unique_identifier "MO_443" xsd:string

[Instance]
id: mged:loess_group_normalization
instance_of: mged:DataTransformationProtocolType
property_value: mged:unique_identifier "MO_377" xsd:string
property_value: rdfs:comment "Application of a normalization of type loess_normalization where a potentially different normalization curve is generated and used for two or more groups (delineated by some criteria); criteria could include blocks (e.g. print-tip groups) on an array, or the day on which mass spectrometry was performed." xsd:string

[Instance]
id: mged:loess_normalization
instance_of: mged:NormalizationDescriptionType
property_value: rdfs:comment "A method of normalizing ratio data by using a locally weighted polynomial regression (typically after a log transformation). The regression can be performed on log ratios resulting from the relation of two data sets versus the average log intensity data from the same two data sets or it can be performed on raw or log transformed values from one data set versus values from another. The goal could be to remove intensity-dependent dye-specific effects from the set of pair wise ratios. This method can \nbe applied globally, or limited by one or more specified criteria." xsd:string
property_value: mged:unique_identifier "MO_428" xsd:string

[Instance]
id: mged:loess_scaled_group_normalization
instance_of: mged:DataTransformationProtocolType
property_value: rdfs:comment "Application of a scale adjustment following loess_group_normalization, to render the group variances similar." xsd:string
property_value: mged:unique_identifier "MO_521" xsd:string

[Instance]
id: mged:log_base_10
instance_of: mged:Scale
property_value: mged:unique_identifier "MO_735" xsd:string
property_value: rdfs:comment "The values presented are logarithm, base 10." xsd:string

[Instance]
id: mged:log_base_2
instance_of: mged:Scale
property_value: rdfs:comment "The values presented are logarithm, base 2." xsd:string
property_value: mged:unique_identifier "MO_647" xsd:string

[Instance]
id: mged:log_base_e
instance_of: mged:Scale
property_value: mged:unique_identifier "MO_554" xsd:string
property_value: rdfs:comment "The values presented are logarithm, base e." xsd:string

[Instance]
id: mged:log_ratio
instance_of: mged:DerivedBioAssayType
property_value: mged:unique_identifier "MO_896" xsd:string
property_value: rdfs:comment "Logarithmic transformation of ratio data." xsd:string

[Instance]
id: mged:long_oligo
instance_of: mged:DesignElement
property_value: rdfs:comment "An element that is an oligonucleotide of at least 50 nucleotides in length." xsd:string
property_value: mged:unique_identifier "MO_598" xsd:string

[Instance]
id: mged:loop_design
instance_of: mged:MethodologicalDesign
property_value: mged:synonym "circular design" xsd:string
property_value: rdfs:comment "A loop experiment design is where labeled extracts are compared in  consecutive pairs.\nsynonym: circular design" xsd:string
property_value: mged:unique_identifier "MO_912" xsd:string

[Instance]
id: mged:low_intensity_filter
instance_of: mged:DeprecatedTerms
property_value: mged:deprecation_old_parent mged:DataTransformationProtocolType
property_value: mged:has_reason_for_deprecation mged:replaced_term
property_value: mged:deprecated_from_version mged:version_1.3.0
property_value: mged:replaced_with_term mged:flag_filter
property_value: mged:was_replaced_by mged:flag_filter
property_value: mged:deprecation_in_version "1.3.0" xsd:string
property_value: mged:deprecation_reason "replaced_term" xsd:string
property_value: rdfs:comment "A transformation method that involves removal of low intensity values in a data set.  For microarrays and gels the threshold for exclusion is usually based on some estimation of local or global background intensity; for mass spectrometry and NMR, it is usually based on the signal-to-noise ratio in the spectrum." xsd:string
property_value: mged:unique_identifier "MO_706" xsd:string

[Instance]
id: mged:lowess_global_normalization
instance_of: mged:DataTransformationProtocolType
property_value: mged:unique_identifier "MO_692" xsd:string
property_value: rdfs:comment "Application of a normalization of type lowess_normalization where the same normalization curve is used for all members of the data set; e.g. Features on an array, picked spots on a gel, or measured metabolites in a sample." xsd:string

[Instance]
id: mged:lowess_group_normalization
instance_of: mged:DataTransformationProtocolType
property_value: mged:unique_identifier "MO_861" xsd:string
property_value: rdfs:comment "Application of a normalization of type lowess_normalization where a potentially different normalization curve is generated and used for two or more groups (delineated by some criteria); criteria could include blocks (e.g. print-tip groups) on an array, or the day on which mass spectrometry was performed." xsd:string

[Instance]
id: mged:lowess_normalization
instance_of: mged:NormalizationDescriptionType
property_value: rdfs:comment "A method of normalizing ratio data by using a locally weighted polynomial \n    regression (typically after a log transformation). The regression can be \n    performed on log ratios resulting from the relation of two data sets \n    versus the average log intensity data from the same two data sets or it \n    can be performed on raw or log transformed values from one data set versus \n    values from another. The goal could be to remove intensity-dependent \n    dye-specific effects from the set of pair wise ratios. This method can be \n    applied globally, or limited by one or more specified criteria." xsd:string
property_value: mged:unique_identifier "MO_720" xsd:string

[Instance]
id: mged:lowess_scaled_group_normalization
instance_of: mged:DataTransformationProtocolType
property_value: rdfs:comment "Application of a scale adjustment following lowess_group_normalization, to render the group variances similar." xsd:string
property_value: mged:unique_identifier "MO_410" xsd:string

[Instance]
id: mged:lumen
instance_of: mged:LightUnit
property_value: mged:unique_identifier "MO_603" xsd:string
property_value: rdfs:comment "The unit of total light output from a light source." xsd:string

[Instance]
id: mged:lux
instance_of: mged:LightUnit
property_value: mged:unique_identifier "MO_573" xsd:string
property_value: rdfs:comment "A metric unit equal to one lumen per square meter. This unit is the modern equivalent of foot-candles where one footcandle is 10.76 lux." xsd:string

[Instance]
id: mged:m
instance_of: mged:DistanceUnit
property_value: mged:unique_identifier "MO_367" xsd:string
property_value: rdfs:comment "meter, distance unit" xsd:string

[Instance]
id: mged:mL_per_L
instance_of: mged:ConcentrationUnit
property_value: mged:unique_identifier "MO_801" xsd:string
property_value: rdfs:comment "milliliters per liter, concentration unit" xsd:string

[Instance]
id: mged:mM
instance_of: mged:ConcentrationUnit
property_value: rdfs:comment "milimolar, concentration unit" xsd:string
property_value: mged:unique_identifier "MO_509" xsd:string

[Instance]
id: mged:mOsm_per_kg_H2O
instance_of: mged:ConcentrationUnitOther
property_value: mged:unique_identifier "MO_661" xsd:string
property_value: rdfs:comment "osmolality per kilogram of water, concentration of the solute per unit of solvent" xsd:string

[Instance]
id: mged:mRNA
instance_of: mged:DeprecatedTerms
property_value: mged:has_reason_for_deprecation mged:deleted_term
property_value: mged:deprecation_old_parent mged:TheoreticalBioSequenceType
property_value: mged:deprecation_replacement_term mged:TheoreticalBioSequenceType
property_value: mged:deprecated_from_version mged:version_1.2.0
property_value: rdfs:comment "sequence of a processed transcript capable of directing protein synthesis" xsd:string
property_value: mged:unique_identifier "MO_803" xsd:string
property_value: mged:deprecation_reason "deleted_term" xsd:string
property_value: mged:deprecation_in_version "1.2.0" xsd:string

[Instance]
id: mged:male
instance_of: mged:Sex
property_value: mged:unique_identifier "MO_652" xsd:string
property_value: rdfs:comment "individual whose sex organs contain only male gametes" xsd:string

[Instance]
id: mged:manhattan_distance
instance_of: mged:NodeValueType
property_value: mged:unique_identifier "MO_567" xsd:string
property_value: rdfs:comment "The \"Manhattan distance\" is the shortest path between two points in a block format, e.g. the length of the path along Manthattan city streets." xsd:string

[Instance]
id: mged:mating_type_a
instance_of: mged:Sex
property_value: rdfs:comment "Mating type of S. cerevisiae." xsd:string
property_value: mged:unique_identifier "MO_659" xsd:string

[Instance]
id: mged:mating_type_alpha
instance_of: mged:Sex
property_value: rdfs:comment "Mating type of S. cerevisiae." xsd:string
property_value: mged:unique_identifier "MO_637" xsd:string

[Instance]
id: mged:mating_type_h_minus
instance_of: mged:Sex
property_value: rdfs:comment "Mating type of S.pombe." xsd:string
property_value: mged:unique_identifier "MO_407" xsd:string

[Instance]
id: mged:mating_type_h_plus
instance_of: mged:Sex
property_value: mged:unique_identifier "MO_855" xsd:string
property_value: rdfs:comment "Mating type of S.pombe." xsd:string

[Instance]
id: mged:mean_and_coefficient_of_variation
instance_of: mged:DerivedBioAssayType
property_value: rdfs:comment "the mean and coefficient of variation values resulting from computationally combining 2 or more sets of BioAssayData" xsd:string
property_value: mged:unique_identifier "MO_425" xsd:string

[Instance]
id: mged:mean_and_confidence_indicators
instance_of: mged:DeprecatedTerms
property_value: mged:deprecated_from_version mged:version_1.2.0
property_value: mged:deprecation_replacement_term mged:DerivedBioAssayType
property_value: mged:deprecation_old_parent mged:DerivedBioAssayType
property_value: mged:has_reason_for_deprecation mged:deleted_term
property_value: mged:unique_identifier "MO_702" xsd:string
property_value: mged:deprecation_in_version "1.2.0" xsd:string
property_value: mged:deprecation_reason "deleted_term" xsd:string
property_value: rdfs:comment "the mean and associated confidence values resulting from combining the data from 2 or more sets of BioAssayData.  Confidence indicators include, but are not limited to: confidence interval, standard deviation, coefficient of variation, and p-value." xsd:string

[Instance]
id: mged:mean_and_p_values
instance_of: mged:DerivedBioAssayType
property_value: mged:unique_identifier "MO_943" xsd:string
property_value: rdfs:comment "the mean and associated p-values resulting from computationally combining 2 or more sets of BioAssayData" xsd:string

[Instance]
id: mged:mean_and_standard_deviation
instance_of: mged:DerivedBioAssayType
property_value: mged:unique_identifier "MO_445" xsd:string
property_value: rdfs:comment "the mean and standard deviation values resulting from computationally combining 2 or more sets of BioAssayData" xsd:string

[Instance]
id: mged:mean_and_variance
instance_of: mged:DerivedBioAssayType
property_value: rdfs:comment "the mean and variance values resulting from computationally combining 2  or more sets of BioAssayData" xsd:string
property_value: mged:unique_identifier "MO_458" xsd:string

[Instance]
id: mged:mean_log_centering
instance_of: mged:NormalizationDescriptionType
property_value: rdfs:comment "A method of normalizing log ratio data by subtraction of the mean log ratios computed across all data points, or an appropriate subset of these (e.g. special control Features on a microarray, or 2DE spots containing constitutively expressed proteins)." xsd:string
property_value: mged:unique_identifier "MO_398" xsd:string

[Instance]
id: mged:mean_log_normalization
instance_of: mged:DataTransformationProtocolType
property_value: rdfs:comment "Application of a normalization of type mean_log_centering." xsd:string
property_value: mged:unique_identifier "MO_657" xsd:string

[Instance]
id: mged:media
instance_of: mged:EnvironmentalFactorCategory
property_value: rdfs:comment "The physical state or matrix used to provide nutrients to the organism (e.g., liquid, agar, soil) " xsd:string
property_value: mged:unique_identifier "MO_545" xsd:string

[Instance]
id: mged:median_log_centering
instance_of: mged:NormalizationDescriptionType
property_value: rdfs:comment "A method of normalizing log ratio data by subtraction of the median log ratios computed across all data points, or an appropriate subset of these (e.g. special control Features on a microarray, or 2DE spots containing constitutively expressed proteins)." xsd:string
property_value: mged:unique_identifier "MO_811" xsd:string

[Instance]
id: mged:median_log_normalization
instance_of: mged:DataTransformationProtocolType
property_value: rdfs:comment "Application of a normalization of type median_log_centering." xsd:string
property_value: mged:unique_identifier "MO_931" xsd:string

[Instance]
id: mged:merged_term
instance_of: mged:DeprecationReason
property_value: rdfs:comment "the term has been subsumed into a more general term" xsd:string

[Instance]
id: mged:metastatic_site
instance_of: mged:CancerSite
property_value: rdfs:comment "the organism part in which additional tumors are identified remote from the primary site" xsd:string
property_value: mged:unique_identifier "MO_806" xsd:string

[Instance]
id: mged:mg
instance_of: mged:MassUnit
property_value: mged:unique_identifier "MO_949" xsd:string
property_value: rdfs:comment "milligram, mass unit" xsd:string

[Instance]
id: mged:mg_per_kg_per_day
instance_of: mged:ConcentrationUnitOther
property_value: mged:unique_identifier "MO_353" xsd:string
property_value: rdfs:comment "milligram per kilogram per day" xsd:string

[Instance]
id: mged:mg_per_ml
instance_of: mged:ConcentrationUnit
property_value: rdfs:comment "milligrams per milliliter, concentration unit" xsd:string
property_value: mged:unique_identifier "MO_522" xsd:string

[Instance]
id: mged:microarray_experiment_record
instance_of: mged:DatabaseEntryType
property_value: rdfs:comment "A record which describes and identifies a microarray experiment e.g. GEO" xsd:string
property_value: mged:unique_identifier "MO_346" xsd:string

[Instance]
id: mged:microeinstein_per_minute_and_square_meter
instance_of: mged:LightUnit
property_value: mged:unique_identifier "MO_526" xsd:string
property_value: rdfs:comment "Microeinstein per minute and square meter (&#181;E m-2 min-1 or uEinstein m-2 min-1). One einstein is one mole or 6.02x10e23 (avogadro constant) photons. It is commonly used as a unit for photosynthetically active radiation (PAR), however the einstein is not an SI unit. Therefore, microEinsteins per m2 per second is identical to micromoles per m2 per second (SI unit for light irradiance). i.e. (1000 &#181;E m-2 s-1 = 1000 &#181;mol m-2 s-1)." xsd:string

[Instance]
id: mged:microeinstein_per_second_and_square_meter
instance_of: mged:LightUnit
property_value: rdfs:comment "Microeinstein per second and square meter (&#181;E m-2 s-1 or uEinstein m-2 s-1). One einstein is one mole or 6.02x10e23 (Avogadro constant) photons. It is commonly used as a unit for photosynthetically active radiation (PAR), however the einstein is not an SI unit. Therefore, microEinsteins per m2 per second is identical to micromoles per m2 per second (SI unit for light irradiance). i.e. (1000 &#181;E m-2 s-1 = 1000 &#181;mol m-2 s-1)." xsd:string
property_value: mged:unique_identifier "MO_584" xsd:string

[Instance]
id: mged:micromole_per_second_and_square_meter
instance_of: mged:OtherUnit
property_value: rdfs:comment "Number of photons in a certain waveband incident per unit time (s) on a unit area (m2) divided by the Avogadro constant (6.022 x 10e23 mol-1). It is used commonly to describe photosynthetically active radiation (PAR) in the 400-700 nm waveband." xsd:string
property_value: mged:unique_identifier "MO_848" xsd:string

[Instance]
id: mged:minutes
instance_of: mged:TimeUnit
property_value: mged:synonym "m" xsd:string
property_value: rdfs:comment "60 seconds, unit of time" xsd:string
property_value: mged:unique_identifier "MO_877" xsd:string

[Instance]
id: mged:missing_feature_or_zone
instance_of: mged:DefectType
property_value: mged:unique_identifier "MO_405" xsd:string
property_value: rdfs:comment "The source DNA was not printed for a Feature or Zone on the slide, possibly due to lack of sample, broken or clogged spotting pin." xsd:string

[Instance]
id: mged:mix_by_inversion
instance_of: mged:AtomicAction
property_value: mged:unique_identifier "MO_700" xsd:string
property_value: rdfs:comment "Mix through the process of inverting." xsd:string

[Instance]
id: mged:mix_by_pipette
instance_of: mged:AtomicAction
property_value: mged:unique_identifier "MO_479" xsd:string
property_value: rdfs:comment "Mix by drawing up and down with a pipette." xsd:string

[Instance]
id: mged:mix_by_vortex
instance_of: mged:AtomicAction
property_value: rdfs:comment "Mix through the use of a vortexer." xsd:string
property_value: mged:unique_identifier "MO_880" xsd:string

[Instance]
id: mged:mix_general
instance_of: mged:AtomicAction
property_value: mged:unique_identifier "MO_944" xsd:string
property_value: rdfs:comment "The procedure of agitating 2 or more materials in order to combine them. The materials may be of any state solid/liquid/gas." xsd:string

[Instance]
id: mged:mixed_design_element_group_type
instance_of: mged:DesignElementGroupType
property_value: mged:unique_identifier "MO_528" xsd:string
property_value: rdfs:comment "a design element group consisting of multiple types " xsd:string

[Instance]
id: mged:mixed_sex
instance_of: mged:Sex
property_value: mged:unique_identifier "MO_436" xsd:string
property_value: rdfs:comment "A population of multiple sexes, e.g. a mixture of females and males, or males and hermaphrodites." xsd:string

[Instance]
id: mged:ml
instance_of: mged:VolumeUnit
property_value: rdfs:comment "milliliter, volume unit" xsd:string
property_value: mged:unique_identifier "MO_488" xsd:string

[Instance]
id: mged:ml_per_kg
instance_of: mged:ConcentrationUnitOther
property_value: rdfs:comment "milliliter per kilogram" xsd:string
property_value: mged:unique_identifier "MO_403" xsd:string

[Instance]
id: mged:mm
instance_of: mged:DistanceUnit
property_value: rdfs:comment "millimeter, unit of distance" xsd:string
property_value: mged:unique_identifier "MO_648" xsd:string

[Instance]
id: mged:mol
instance_of: mged:QuantityUnit
property_value: rdfs:comment "mole, unit of quantity" xsd:string
property_value: mged:unique_identifier "MO_998" xsd:string

[Instance]
id: mged:molecular_mixture
instance_of: mged:MaterialType
property_value: rdfs:comment "an unspecified collection of heterogeneous molecules, e.g. lipids, carbohydrate , nucleic acids and proteins" xsd:string
property_value: mged:unique_identifier "MO_889" xsd:string

[Instance]
id: mged:molecules
instance_of: mged:QuantityUnit
property_value: mged:unique_identifier "MO_707" xsd:string
property_value: rdfs:comment "number of molecules, quantity unit" xsd:string

[Instance]
id: mged:monosomy
instance_of: mged:DeprecatedTerms
property_value: mged:deprecation_old_parent mged:ChromosomalAberrationClassification
property_value: mged:deprecated_from_version mged:version_1.1.9
property_value: mged:has_reason_for_deprecation mged:replaced_term
property_value: mged:replaced_with_term mged:oligosomy
property_value: mged:was_replaced_by mged:oligosomy
property_value: mged:deprecation_in_version "1.1.9" xsd:string
property_value: mged:deprecation_reason "replaced_term" xsd:string
property_value: mged:unique_identifier "MO_424" xsd:string
property_value: rdfs:comment "Absence of one chromosome of a pair of homologous chromosomes. In a normally diploid cell it is represented symbolically as 2N-1." xsd:string

[Instance]
id: mged:months
instance_of: mged:TimeUnit
property_value: mged:unique_identifier "MO_631" xsd:string
property_value: rdfs:comment "Unit of time corresponding to approx. one cycle of the moon's phases." xsd:string

[Instance]
id: mged:mother
instance_of: mged:FamilyRelationship
property_value: mged:unique_identifier "MO_387" xsd:string
property_value: rdfs:comment "A female parent." xsd:string

[Instance]
id: mged:moving_average
instance_of: mged:DataTransformationProtocolType
property_value: rdfs:comment "A type of data transformation in which an average, usually the mean, is calculated across values within a sliding window. e.g. The moving average of signal intensity, or array CGH, data may be used in normalization." xsd:string
property_value: mged:unique_identifier "MO_681" xsd:string

[Instance]
id: mged:ms
instance_of: mged:TimeUnit
property_value: rdfs:comment "millisecond, time unit" xsd:string
property_value: mged:unique_identifier "MO_920" xsd:string

[Instance]
id: mged:mtDNA
instance_of: mged:PhysicalBioSequenceType
property_value: mged:unique_identifier "MO_581" xsd:string
property_value: rdfs:comment "sequence from the mitochondrial genome" xsd:string

[Instance]
id: mged:multiple_testing_correction
instance_of: mged:HigherLevelAnalysisProtocolType
property_value: mged:unique_identifier "MO_561" xsd:string
property_value: rdfs:comment "Multiple testing correction uses individual p-values derived from multiple statistical tests to control either the family-wise error rate or the false discovery rate." xsd:string

[Instance]
id: mged:negative
instance_of: mged:Result
property_value: mged:unique_identifier "MO_802" xsd:string
property_value: rdfs:comment "false or no " xsd:string

[Instance]
id: mged:negative_float
instance_of: mged:DataType
property_value: mged:unique_identifier "MO_728" xsd:string
property_value: rdfs:comment "A float that is &lt; 0." xsd:string

[Instance]
id: mged:negative_integer
instance_of: mged:DataType
property_value: rdfs:comment "An integer &lt; 0." xsd:string
property_value: mged:unique_identifier "MO_864" xsd:string

[Instance]
id: mged:ng
instance_of: mged:MassUnit
property_value: rdfs:comment "nanogram, a mass unit" xsd:string
property_value: mged:unique_identifier "MO_796" xsd:string

[Instance]
id: mged:nitrocellulose
instance_of: mged:SubstrateType
property_value: rdfs:comment "The array is made on a nitrocellulose  filter." xsd:string
property_value: mged:unique_identifier "MO_455" xsd:string

[Instance]
id: mged:nl
instance_of: mged:VolumeUnit
property_value: mged:unique_identifier "MO_754" xsd:string
property_value: rdfs:comment "nanoliter unit of volume" xsd:string

[Instance]
id: mged:nm
instance_of: mged:DistanceUnit
property_value: rdfs:comment "nanometer distance unit" xsd:string
property_value: mged:unique_identifier "MO_862" xsd:string

[Instance]
id: mged:nmol
instance_of: mged:QuantityUnit
property_value: rdfs:comment "nanomoles, quantity unit" xsd:string
property_value: mged:unique_identifier "MO_743" xsd:string

[Instance]
id: mged:no
instance_of: mged:DeprecatedTerms
property_value: mged:has_reason_for_deprecation mged:deleted_term
property_value: mged:deprecated_from_version mged:version_1.1.7
property_value: mged:unique_identifier "MO_556" xsd:string
property_value: mged:deprecation_reason "deleted_term" xsd:string
property_value: rdfs:comment "false" xsd:string
property_value: mged:deprecation_in_version "1.1.7" xsd:string

[Instance]
id: mged:non-targeted_transgenic_variation_design
instance_of: mged:PerturbationalDesign
property_value: mged:unique_identifier "MO_775" xsd:string
property_value: rdfs:comment "The modification of an organism due to the presence of DNA from another individual, e.g. of a different strain, species or breed. These do not include targeted transgenics such as knock-ins and knock-outs." xsd:string

[Instance]
id: mged:nonnegative_float
instance_of: mged:DataType
property_value: rdfs:comment "A float greater than or equal to 0." xsd:string
property_value: mged:unique_identifier "MO_386" xsd:string

[Instance]
id: mged:nonnegative_integer
instance_of: mged:DataType
property_value: mged:unique_identifier "MO_390" xsd:string
property_value: rdfs:comment "An integer &gt;= 0." xsd:string

[Instance]
id: mged:nonpositive_float
instance_of: mged:DataType
property_value: mged:unique_identifier "MO_656" xsd:string
property_value: rdfs:comment "A float less than or equal to zero." xsd:string

[Instance]
id: mged:nonpositive_integer
instance_of: mged:DataType
property_value: mged:unique_identifier "MO_623" xsd:string
property_value: rdfs:comment "An integer less than or equal to zero." xsd:string

[Instance]
id: mged:normalization_testing_design
instance_of: mged:MethodologicalDesign
property_value: rdfs:comment "A normalization testing experiment design tests different normalization procedures." xsd:string
property_value: mged:unique_identifier "MO_729" xsd:string

[Instance]
id: mged:normalized_intensities
instance_of: mged:DerivedBioAssayType
property_value: rdfs:comment "Results of normalization, by some method, of a bioassay data set such as; intensities from one or both channels of a microarray-based assay; orthologous spot sets on 2D gels; or repeat measurements of the same metabolite in replicate cell cultures." xsd:string
property_value: mged:unique_identifier "MO_994" xsd:string

[Instance]
id: mged:normalized_ratios
instance_of: mged:DerivedBioAssayType
property_value: rdfs:comment "Results obtained by either taking the pair wise ratios of two bioassay data sets and then normalizing, or normalizing each bioassay data set and then taking ratios." xsd:string
property_value: mged:unique_identifier "MO_664" xsd:string

[Instance]
id: mged:not_extract
instance_of: mged:BioSampleType
property_value: mged:unique_identifier "MO_894" xsd:string
property_value: rdfs:comment "The BioSample at any stage other than immediately before labeling." xsd:string

[Instance]
id: mged:not_sequence_verified
instance_of: mged:WarningType
property_value: rdfs:comment "The sequence of the BioSequence that relates to this reporter has not been sequence verified by the experimenter." xsd:string
property_value: mged:unique_identifier "MO_970" xsd:string

[Instance]
id: mged:not_uniform
instance_of: mged:DefectType
property_value: mged:unique_identifier "MO_906" xsd:string
property_value: rdfs:comment "The source DNA for a Feature was not uniformly deposited." xsd:string

[Instance]
id: mged:nuclear_RNA
instance_of: mged:MaterialType
property_value: rdfs:comment "RNA obtained from the nucleus." xsd:string
property_value: mged:unique_identifier "MO_679" xsd:string

[Instance]
id: mged:nucleic_acid_extraction
instance_of: mged:ComplexAction
property_value: rdfs:comment "The procedure of extracting nucleic acid from the biomaterial." xsd:string
property_value: mged:unique_identifier "MO_607" xsd:string

[Instance]
id: mged:nucleic_acid_extraction
instance_of: mged:ComplexAction
property_value: rdfs:comment "The procedure of extracting nucleic acid from the biomaterial." xsd:string
property_value: mged:unique_identifier "MO_607" xsd:string

[Instance]
id: mged:nucleic_acid_primary_sequence_record
instance_of: mged:DatabaseEntryType
property_value: rdfs:comment "A record which describes and identifies a primary sequence record e.g. DDBJ/EMBL/Genbank" xsd:string
property_value: mged:unique_identifier "MO_757" xsd:string

[Instance]
id: mged:number_per_day
instance_of: mged:OtherUnit
property_value: rdfs:comment "number of items or events per day" xsd:string
property_value: mged:unique_identifier "MO_670" xsd:string

[Instance]
id: mged:nutrients
instance_of: mged:EnvironmentalFactorCategory
property_value: rdfs:comment "The food provided to the organism (e.g., chow, fertilizer, DEMM 10%FBS, etc.)." xsd:string
property_value: mged:unique_identifier "MO_867" xsd:string

[Instance]
id: mged:nylon
instance_of: mged:SubstrateType
property_value: rdfs:comment "The array is made on a nylon membrane." xsd:string
property_value: mged:unique_identifier "MO_492" xsd:string

[Instance]
id: mged:oligo_synthesizer
instance_of: mged:HardwareType
property_value: rdfs:comment "Hardware for synthesizing oligos." xsd:string
property_value: mged:unique_identifier "MO_930" xsd:string

[Instance]
id: mged:oligosomy
instance_of: mged:ChromosomalAberrationClassification
property_value: rdfs:comment "A state or condition describing a cell or organism that has fewer copies of a single chromosome than the usual complement." xsd:string

[Instance]
id: mged:online_resource
instance_of: mged:PublicationType
property_value: rdfs:comment "A publication type which is available online and which is not an online journal article, e.g. a web site or service." xsd:string
property_value: mged:unique_identifier "MO_991" xsd:string

[Instance]
id: mged:ontology_record
instance_of: mged:DatabaseEntryType
property_value: mged:unique_identifier "MO_529" xsd:string
property_value: rdfs:comment "A record which describes and identifies a term, class or instance in an ontology or controlled vocabulary e.g. ICD" xsd:string

[Instance]
id: mged:openGALEN
instance_of: mged:OrganismPartDatabase
property_value: mged:unique_identifier "MO_613" xsd:string
property_value: mged:has_human_readable_URI "http://www.opengalen.org/open/crm/crm-anatomy.html" xsd:string
property_value: rdfs:comment "OpenGALEN Human Anatomy - open source database of approx. ten thousand\nhuman anatomy concepts together with extensive semantic relationships between them including part-of, connects, branch-of, serves, laterality. Also includes some human physiological processes together with functional relationships between these and the anatomy concepts." xsd:string

[Instance]
id: mged:operating_system
instance_of: mged:SoftwareType
property_value: mged:unique_identifier "MO_847" xsd:string
property_value: rdfs:comment "Software upon which other software runs." xsd:string

[Instance]
id: mged:operator_variation_design
instance_of: mged:MethodologicalDesign
property_value: rdfs:comment "An operator variation experiment design type assesses the operator performance and relation to data consistency and quality." xsd:string
property_value: mged:unique_identifier "MO_519" xsd:string

[Instance]
id: mged:operon
instance_of: mged:DeprecatedTerms
property_value: mged:deprecated_from_version mged:version_1.2.0
property_value: mged:deprecation_old_parent mged:TheoreticalBioSequenceType
property_value: mged:has_reason_for_deprecation mged:deleted_term
property_value: mged:deprecation_replacement_term mged:TheoreticalBioSequenceType
property_value: mged:unique_identifier "MO_759" xsd:string
property_value: mged:deprecation_in_version "1.2.0" xsd:string
property_value: mged:deprecation_reason "deleted_term" xsd:string
property_value: rdfs:comment "sequence which represents an operon, a unit of genetically linked genes displaying coordinated and regulated gene activity, originally described in prokaryotes" xsd:string

[Instance]
id: mged:operon_identification_design
instance_of: mged:BioMolecularAnnotation
property_value: rdfs:comment "An operon identification experiment type is designed to identify locations and members of operons in a genome." xsd:string
property_value: mged:unique_identifier "MO_772" xsd:string

[Instance]
id: mged:optimization_design
instance_of: mged:MethodologicalDesign
property_value: mged:unique_identifier "MO_934" xsd:string
property_value: rdfs:comment "An optimization experiment design type is where different protocols or  protocol parameters are compared." xsd:string

[Instance]
id: mged:oral_gavage
instance_of: mged:DeliveryMethod
property_value: rdfs:comment "delivery method for drug or compound whereby the drug is administered via the mouth" xsd:string
property_value: mged:unique_identifier "MO_975" xsd:string

[Instance]
id: mged:organellar_DNA
instance_of: mged:MaterialType
property_value: rdfs:comment "DNA from organelles such as the mitochondria or chloroplast." xsd:string
property_value: mged:unique_identifier "MO_645" xsd:string

[Instance]
id: mged:organellar_RNA
instance_of: mged:MaterialType
property_value: mged:unique_identifier "MO_574" xsd:string
property_value: rdfs:comment "RNA obtained from an organelle, e.g., mitochondrion, ER, or chloroplast, excluding the nucleus." xsd:string

[Instance]
id: mged:organism
instance_of: mged:BioMaterialCharacteristicCategory
property_value: mged:unique_identifier "MO_508" xsd:string
property_value: rdfs:comment "one or more of any unicellular or multicellular pro or eukaryote, including archaebacteria" xsd:string

[Instance]
id: mged:organism_part
instance_of: mged:BioMaterialCharacteristicCategory
property_value: rdfs:comment "The part of organism's anatomy or substance arising from an organism from which the biomaterial was derived, excludes cells. E.g. tissue, organ, system, sperm, blood or body location (arm)." xsd:string
property_value: mged:unique_identifier "MO_954" xsd:string

[Instance]
id: mged:organism_part
instance_of: mged:BioMaterialCharacteristicCategory
property_value: rdfs:comment "The part of organism's anatomy or substance arising from an organism from which the biomaterial was derived, excludes cells. E.g. tissue, organ, system, sperm, blood or body location (arm)." xsd:string
property_value: mged:unique_identifier "MO_954" xsd:string

[Instance]
id: mged:organism_part_comparison_design
instance_of: mged:BiologicalProperty
property_value: rdfs:comment "An organism part comparison experiment design type compares tissues, regions, organs within or between organisms " xsd:string
property_value: mged:unique_identifier "MO_953" xsd:string

[Instance]
id: mged:organism_status
instance_of: mged:BioMaterialCharacteristicCategory
property_value: mged:unique_identifier "MO_871" xsd:string
property_value: rdfs:comment "The stage premortem or postmortem at which the sample was processed for extraction of biomaterials. " xsd:string

[Instance]
id: mged:organism_status_design
instance_of: mged:BiologicalProperty
property_value: rdfs:comment "A design that compares samples from live and dead organisms." xsd:string
property_value: mged:unique_identifier "MO_841" xsd:string

[Instance]
id: mged:pH
instance_of: mged:ConcentrationUnitOther
property_value: mged:unique_identifier "MO_814" xsd:string
property_value: rdfs:comment "potential of hydrogen" xsd:string

[Instance]
id: mged:pM
instance_of: mged:ConcentrationUnit
property_value: rdfs:comment "picomolar, concentration unit" xsd:string
property_value: mged:unique_identifier "MO_628" xsd:string

[Instance]
id: mged:paraffin_sample
instance_of: mged:BioSourceType
property_value: mged:unique_identifier "MO_990" xsd:string
property_value: rdfs:comment "A biomaterial obtained embedded in paraffin (wax)." xsd:string

[Instance]
id: mged:pathogenicity_design
instance_of: mged:PerturbationalDesign
property_value: mged:unique_identifier "MO_807" xsd:string
property_value: rdfs:comment "A pathogenicity experiment design type is where an infective agent such as a bacterium, virus, protozoan, fungus etc. infects a host organism(s) and the infective agent is assayed." xsd:string

[Instance]
id: mged:pathway_record
instance_of: mged:DatabaseEntryType
property_value: mged:unique_identifier "MO_780" xsd:string
property_value: rdfs:comment "a record which identifies and describes biological pathways, e.g. a KEGG record" xsd:string

[Instance]
id: mged:pearson_correlation_coefficient
instance_of: mged:NodeValueType
property_value: mged:unique_identifier "MO_558" xsd:string
property_value: rdfs:comment "The Pearson's correlation coefficient between two variables. Its values can range between -1.00 to +1.00. The closer the absolute value of the Pearson correlation coefficient is to 0, the smaller the linear relationship between the two variables. A Pearson correlation coefficient with absolute value 1 indicates perfect linear relationship." xsd:string

[Instance]
id: mged:pedigree_record
instance_of: mged:DatabaseEntryType
property_value: rdfs:comment "A record which describes and identifies a pedigree or lineage for a strain, line, individual or cell whose lineage traceable e.g. a wormbase cell lineage record, or a pedigree record for a mouse" xsd:string
property_value: mged:unique_identifier "MO_969" xsd:string

[Instance]
id: mged:peer_review_quality_control
instance_of: mged:QualityControlDescriptionType
property_value: mged:unique_identifier "MO_365" xsd:string
property_value: rdfs:comment "An experiment which has a peer reviewed publication attached." xsd:string

[Instance]
id: mged:percent_confluence
instance_of: mged:ConcentrationUnitOther
property_value: rdfs:comment "A measure of the density of an attached or monolayer culture (e.g., cell culture), e.g., 80 percent_confluence.\n " xsd:string
property_value: mged:unique_identifier "MO_378" xsd:string

[Instance]
id: mged:percent_purity
instance_of: mged:ConcentrationUnitOther
property_value: rdfs:comment "A relative measurement of homogeneity of a biomaterial e.g. tumor biopsy." xsd:string
property_value: mged:unique_identifier "MO_482" xsd:string

[Instance]
id: mged:percent_vol_per_vol
instance_of: mged:ConcentrationUnit
property_value: mged:unique_identifier "MO_916" xsd:string
property_value: rdfs:comment "percentage volume per volume, concentration unit" xsd:string

[Instance]
id: mged:percent_weight_per_vol
instance_of: mged:ConcentrationUnit
property_value: rdfs:comment "percent weight per volume, concentration unit " xsd:string
property_value: mged:unique_identifier "MO_420" xsd:string

[Instance]
id: mged:percent_weight_per_weight
instance_of: mged:ConcentrationUnit
property_value: mged:unique_identifier "MO_474" xsd:string
property_value: rdfs:comment "percent weight per weight, concentration unit" xsd:string

[Instance]
id: mged:pfu_per_ml
instance_of: mged:ConcentrationUnitOther
property_value: mged:unique_identifier "MO_768" xsd:string
property_value: rdfs:comment "the number of plaque forming units per ml" xsd:string

[Instance]
id: mged:pg
instance_of: mged:MassUnit
property_value: mged:unique_identifier "MO_363" xsd:string
property_value: rdfs:comment "picogram, mass unit" xsd:string

[Instance]
id: mged:phylogeny_record
instance_of: mged:DatabaseEntryType
property_value: mged:unique_identifier "MO_662" xsd:string
property_value: rdfs:comment "A record which describes and identifies the relationship between species and is\ncomputationally determined and based on sequences e.g. Treebase record" xsd:string

[Instance]
id: mged:physical_characteristics
instance_of: mged:BioMaterialCharacteristicCategory
property_value: mged:unique_identifier "MO_863" xsd:string
property_value: rdfs:comment "A descriptor for FactorValue where PhysicalCharacteristics are compared.  " xsd:string

[Instance]
id: mged:physiological_process_design
instance_of: mged:BiologicalProperty
property_value: rdfs:comment "Those processes specifically pertinent to the functioning of integrated \n    living units: cells, tissues, organs, and organisms. This includes those \n    processes that exhibit an endogenous periodicity independently of any \n    daily variation in the environment such as circadian rhythm or aging." xsd:string

[Instance]
id: mged:pl
instance_of: mged:VolumeUnit
property_value: rdfs:comment "picoliter, volume unit" xsd:string
property_value: mged:unique_identifier "MO_905" xsd:string

[Instance]
id: mged:place
instance_of: mged:AtomicAction
property_value: rdfs:comment "The procedure of putting a physical object in a container/physical space." xsd:string
property_value: mged:unique_identifier "MO_470" xsd:string

[Instance]
id: mged:planting
instance_of: mged:InitialTimePoint
property_value: rdfs:comment "The act of placing a plant in media (e.g. soil) to allow it to grow.  This excludes sowing." xsd:string
property_value: mged:unique_identifier "MO_495" xsd:string

[Instance]
id: mged:plasmid
instance_of: mged:DeprecatedTerms
property_value: mged:deprecation_replacement_term mged:PhysicalBioSequenceType
property_value: mged:has_reason_for_deprecation mged:deleted_term
property_value: mged:deprecated_from_version mged:version_1.2.0
property_value: mged:deprecation_old_parent mged:PhysicalBioSequenceType
property_value: mged:deprecation_reason "deleted_term" xsd:string
property_value: rdfs:comment "sequence from a plasmid, an extrachromosomal autonomously replicating piece of DNA excluding mitochondria and chloroplasts " xsd:string
property_value: mged:deprecation_in_version "1.2.0" xsd:string
property_value: mged:unique_identifier "MO_439" xsd:string

[Instance]
id: mged:pmol
instance_of: mged:QuantityUnit
property_value: rdfs:comment "picomoles, quantity unit" xsd:string
property_value: mged:unique_identifier "MO_688" xsd:string

[Instance]
id: mged:polyA_RNA
instance_of: mged:MaterialType
property_value: rdfs:comment "RNA which has been obtained by selection for polyA tracts. \nExact synonym: polyA+_RNA\nNon-exact synonym: mRNA" xsd:string
property_value: mged:synonym "polyA+_RNA" xsd:string
property_value: mged:unique_identifier "MO_600" xsd:string
property_value: mged:synonym "mRNA" xsd:string

[Instance]
id: mged:polylysine
instance_of: mged:SurfaceType
property_value: mged:unique_identifier "MO_569" xsd:string
property_value: rdfs:comment "a surface coating for immobilization with the polypeptide, polylysine" xsd:string

[Instance]
id: mged:polypeptide
instance_of: mged:DeprecatedTerms
property_value: mged:deprecated_from_version mged:version_1.2.0
property_value: mged:deprecation_replacement_term mged:TheoreticalBioSequenceType
property_value: mged:deprecation_old_parent mged:PhysicalBioSequenceType
property_value: mged:has_reason_for_deprecation mged:deleted_term
property_value: mged:deprecation_replacement_term mged:PhysicalBioSequenceType
property_value: mged:deprecation_old_parent mged:TheoreticalBioSequenceType
property_value: rdfs:comment "sequence of a protein, a linear amino acid polymer" xsd:string
property_value: mged:deprecation_in_version "1.2.0" xsd:string
property_value: mged:deprecation_reason "deleted_term" xsd:string
property_value: mged:unique_identifier "MO_530" xsd:string

[Instance]
id: mged:polyploid
instance_of: mged:Ploidy
property_value: rdfs:comment "Describes a cell, nucleus or organism with three or more copies of each chromosome." xsd:string
property_value: mged:unique_identifier "MO_394" xsd:string

[Instance]
id: mged:polysomy
instance_of: mged:ChromosomalAberrationClassification
property_value: rdfs:comment "A state or condition describing a cell or organism that has more copies of a single chromosome than the usual complement." xsd:string

[Instance]
id: mged:pool
instance_of: mged:ComplexAction
property_value: mged:unique_identifier "MO_779" xsd:string
property_value: mged:synonym "combine" xsd:string
property_value: rdfs:comment "The process of combining two or more BioMaterials.  \nExact synonym: combine" xsd:string

[Instance]
id: mged:pool
instance_of: mged:ComplexAction
property_value: mged:unique_identifier "MO_779" xsd:string
property_value: mged:synonym "combine" xsd:string
property_value: rdfs:comment "The process of combining two or more BioMaterials.  \nExact synonym: combine" xsd:string

[Instance]
id: mged:population_density
instance_of: mged:EnvironmentalFactorCategory
property_value: rdfs:comment "The concentration range of the organism." xsd:string
property_value: mged:unique_identifier "MO_650" xsd:string

[Instance]
id: mged:positive
instance_of: mged:Result
property_value: rdfs:comment "true or yes" xsd:string
property_value: mged:unique_identifier "MO_429" xsd:string

[Instance]
id: mged:positive_float
instance_of: mged:DataType
property_value: rdfs:comment "A float &gt; 0." xsd:string
property_value: mged:unique_identifier "MO_501" xsd:string

[Instance]
id: mged:positive_integer
instance_of: mged:DataType
property_value: mged:unique_identifier "MO_629" xsd:string
property_value: rdfs:comment "An integer &gt; 0." xsd:string

[Instance]
id: mged:postmortem
instance_of: mged:OrganismStatus
property_value: mged:unique_identifier "MO_416" xsd:string
property_value: rdfs:comment "biomaterial removed after the death of the organism" xsd:string

[Instance]
id: mged:predicted_gene
instance_of: mged:TheoreticalBioSequenceType
property_value: rdfs:comment "gene sequence which has been computationally predicted" xsd:string
property_value: mged:unique_identifier "MO_838" xsd:string

[Instance]
id: mged:premortem
instance_of: mged:OrganismStatus
property_value: rdfs:comment "sample which has been removed prior to the death of an organism" xsd:string
property_value: mged:unique_identifier "MO_705" xsd:string

[Instance]
id: mged:preservation
instance_of: mged:ComplexAction
property_value: mged:unique_identifier "MO_415" xsd:string
property_value: rdfs:comment "The type of protocol used to preserve (including storage or keep in stasis) the biomaterial." xsd:string

[Instance]
id: mged:preservation
instance_of: mged:ComplexAction
property_value: mged:unique_identifier "MO_415" xsd:string
property_value: rdfs:comment "The type of protocol used to preserve (including storage or keep in stasis) the biomaterial." xsd:string

[Instance]
id: mged:primary_protein_structure_record
instance_of: mged:DatabaseEntryType
property_value: mged:unique_identifier "MO_785" xsd:string
property_value: rdfs:comment "A record which describes and identifies an experimentally derived protein structure e.g. MSD" xsd:string

[Instance]
id: mged:primary_site
instance_of: mged:CancerSite
property_value: mged:unique_identifier "MO_408" xsd:string
property_value: rdfs:comment "the organism part in which the tumor originated" xsd:string

[Instance]
id: mged:promoter
instance_of: mged:DeprecatedTerms
property_value: mged:has_reason_for_deprecation mged:deleted_term
property_value: mged:deprecated_from_version mged:version_1.2.0
property_value: mged:deprecation_old_parent mged:TheoreticalBioSequenceType
property_value: mged:deprecation_replacement_term mged:TheoreticalBioSequenceType
property_value: mged:unique_identifier "MO_911" xsd:string
property_value: mged:deprecation_in_version "1.2.0" xsd:string
property_value: mged:deprecation_reason "deleted_term" xsd:string
property_value: rdfs:comment "genomic sequence 5' to a gene where the transcription initiation complex forms." xsd:string

[Instance]
id: mged:protein
instance_of: mged:MaterialType
property_value: mged:unique_identifier "MO_683" xsd:string
property_value: rdfs:comment "Polymer of amino acids." xsd:string

[Instance]
id: mged:protein
instance_of: mged:MaterialType
property_value: mged:unique_identifier "MO_683" xsd:string
property_value: rdfs:comment "Polymer of amino acids." xsd:string

[Instance]
id: mged:purify
instance_of: mged:ExperimentalProtocolType
property_value: rdfs:comment "The action of enriching a BioMaterial  (organism, cell, nucleic acid etc) or Compound e.g. for FACS for positive selection  or RNA  cleanup the Action or ProtocolType is purify (see fractionate). " xsd:string
property_value: mged:unique_identifier "MO_406" xsd:string

[Instance]
id: mged:purify
instance_of: mged:ExperimentalProtocolType
property_value: rdfs:comment "The action of enriching a BioMaterial  (organism, cell, nucleic acid etc) or Compound e.g. for FACS for positive selection  or RNA  cleanup the Action or ProtocolType is purify (see fractionate). " xsd:string
property_value: mged:unique_identifier "MO_406" xsd:string

[Instance]
id: mged:quality_control_testing_design
instance_of: mged:MethodologicalDesign
property_value: mged:unique_identifier "MO_981" xsd:string
property_value: rdfs:comment "A  quality control testing experiment design type is where some aspect of the experiment is quality controlled for the purposes of quality assurance " xsd:string

[Instance]
id: mged:quantile_normalization
instance_of: mged:NormalizationDescriptionType
property_value: rdfs:comment "A method of normalizing a set of MeasuredBioAssayData aimed at rendering the distribution of intensities for each assay in the set the same, by forcing the values of quantiles to be equal across assays." xsd:string
property_value: mged:unique_identifier "MO_951" xsd:string

[Instance]
id: mged:quantile_normalization_protocol_type
instance_of: mged:DataTransformationProtocolType
property_value: rdfs:comment "Application of a normalization of type quantile_normalization." xsd:string
property_value: mged:unique_identifier "MO_457" xsd:string

[Instance]
id: mged:rRNA_gene
instance_of: mged:DeprecatedTerms
property_value: mged:deprecation_replacement_term mged:TheoreticalBioSequenceType
property_value: mged:has_reason_for_deprecation mged:deleted_term
property_value: mged:deprecation_old_parent mged:TheoreticalBioSequenceType
property_value: mged:deprecated_from_version mged:version_1.2.0
property_value: mged:deprecation_in_version "1.2.0" xsd:string
property_value: mged:unique_identifier "MO_955" xsd:string
property_value: mged:synonym "ribosomal RNA gene" xsd:string
property_value: rdfs:comment "sequence from gene coding for ribosomal RNA\nexact synonym: ribosomal RNA gene" xsd:string
property_value: mged:deprecation_reason "deleted_term" xsd:string

[Instance]
id: mged:ratio
instance_of: mged:DerivedBioAssayType
property_value: mged:unique_identifier "MO_597" xsd:string
property_value: rdfs:comment "Result of data reduction involving computation of the quotient of a pair of numerical values, such as signal intensities obtained from the hybridization of two or more labeled extracts to one or more microarrays; volumes of matched spots from comparative 2D gel electrophoresis of two or more labeled extracts; or comparative profiling of a particular metabolite in health and disease by NMR." xsd:string

[Instance]
id: mged:ratio_statistics_normalization
instance_of: mged:NormalizationDescriptionType
property_value: rdfs:comment "A method to re-scale paired-assay data from one data set relative to the other, based on an iterative regression method of calculating single parameter linear normalization factors. This method allows calculation of the mean, standard deviation and confidence interval limits for the distribution of measured ratio values." xsd:string
property_value: mged:unique_identifier "MO_349" xsd:string

[Instance]
id: mged:real_time_PCR_quality_control
instance_of: mged:QualityControlDescriptionType
property_value: mged:unique_identifier "MO_434" xsd:string
property_value: rdfs:comment "A PCR based quantitative validation of a subset of the array based data used for experimental QC purposes." xsd:string

[Instance]
id: mged:rectangular_feature
instance_of: mged:FeatureShape
property_value: mged:unique_identifier "MO_897" xsd:string
property_value: rdfs:comment "The shape of the feature on the array is rectangular." xsd:string

[Instance]
id: mged:reference_design
instance_of: mged:MethodologicalDesign
property_value: rdfs:comment "A reference experiment design type is where all samples are compared to a common reference. " xsd:string
property_value: mged:unique_identifier "MO_699" xsd:string

[Instance]
id: mged:relative
instance_of: mged:MeasurementType
property_value: rdfs:comment "a measurement where the value is dependent on another measurement" xsd:string
property_value: mged:unique_identifier "MO_396" xsd:string

[Instance]
id: mged:relative_humidity
instance_of: mged:EnvironmentalFactorCategory
property_value: rdfs:comment "The amount of moisture in the air expressed as a percentage of the maximum amount the air is capable of holding." xsd:string
property_value: mged:unique_identifier "MO_453" xsd:string

[Instance]
id: mged:remove
instance_of: mged:AtomicAction
property_value: mged:unique_identifier "MO_713" xsd:string
property_value: rdfs:comment "The procedure of extracting/taking out a part of a reaction/contents of a container." xsd:string

[Instance]
id: mged:replaced_term
instance_of: mged:DeprecationReason
property_value: rdfs:comment "The term name was changed to one more appropriate to the intent of the definition." xsd:string

[Instance]
id: mged:replicate_analysis
instance_of: mged:DataTransformationProtocolType
property_value: rdfs:comment "A transformation method in which replicate intensity or ratio data sets are combined.  Analysis of the mean and standard deviation values for replicate data points can be used to identify and potentially exclude low quality data." xsd:string
property_value: mged:unique_identifier "MO_433" xsd:string

[Instance]
id: mged:replicate_design
instance_of: mged:MethodologicalDesign
property_value: mged:unique_identifier "MO_885" xsd:string
property_value: rdfs:comment "A replicate experimental design type is where a series of replicates are performed to evaluate reproducibility or as a pilot study to determine the appropriate number of replicates for a subsequent experiments." xsd:string

[Instance]
id: mged:resuspend
instance_of: mged:AtomicAction
property_value: rdfs:comment "The procedure in which solid material is dispensed or dissolved in a liquid." xsd:string
property_value: mged:unique_identifier "MO_466" xsd:string

[Instance]
id: mged:reverse
instance_of: mged:StrandType
property_value: mged:unique_identifier "MO_402" xsd:string
property_value: mged:synonym "-" xsd:string
property_value: rdfs:comment "the reverse strand\nexact synonym: -" xsd:string

[Instance]
id: mged:reverse_transcription
instance_of: mged:ComplexAction
property_value: rdfs:comment "Generation of a DNA strand from an RNA strand using reverse transcriptase." xsd:string
property_value: mged:unique_identifier "MO_480" xsd:string

[Instance]
id: mged:reverse_transcription
instance_of: mged:ComplexAction
property_value: rdfs:comment "Generation of a DNA strand from an RNA strand using reverse transcriptase." xsd:string
property_value: mged:unique_identifier "MO_480" xsd:string

[Instance]
id: mged:reverse_transcription_PCR_quality_control
instance_of: mged:QualityControlDescriptionType
property_value: rdfs:comment "A PCR based semi quantitative validation of a subset of the array based data used for experimental QC purposes." xsd:string
property_value: mged:unique_identifier "MO_986" xsd:string

[Instance]
id: mged:sacrifice
instance_of: mged:ComplexAction
property_value: rdfs:comment "The procedure of euthanizing an organism." xsd:string
property_value: mged:unique_identifier "MO_602" xsd:string

[Instance]
id: mged:sacrifice
instance_of: mged:ComplexAction
property_value: rdfs:comment "The procedure of euthanizing an organism." xsd:string
property_value: mged:unique_identifier "MO_602" xsd:string

[Instance]
id: mged:sampling_time_point
instance_of: mged:BioMaterialCharacteristicCategory
property_value: rdfs:comment "&lt;pre&gt;The time point that a sample was taken. Not to be used where the sample is part of a time\ncourse. SamplingTimePoint is not related to age. An instance could be summer, a date, a time, or a range value&lt;/pre&gt;" xsd:string
property_value: mged:unique_identifier "MO_866" xsd:string

[Instance]
id: mged:seconds
instance_of: mged:TimeUnit
property_value: mged:unique_identifier "MO_391" xsd:string
property_value: rdfs:comment "time unit" xsd:string

[Instance]
id: mged:secreted_protein_identification_design
instance_of: mged:BioMolecularAnnotation
property_value: mged:unique_identifier "MO_694" xsd:string
property_value: rdfs:comment "A secreted protein identification design type identifies transcripts associated with a secretory pathway during translation and is used to infer which proteins are secreted or membrane bound. " xsd:string

[Instance]
id: mged:seed_dormancy
instance_of: mged:PreservationType
property_value: rdfs:comment "preservation type whereby the seed is maintained in a dormant state" xsd:string
property_value: mged:unique_identifier "MO_666" xsd:string

[Instance]
id: mged:self_vs_self_design
instance_of: mged:MethodologicalDesign
property_value: mged:unique_identifier "MO_490" xsd:string
property_value: rdfs:comment "A self vs. self experiment design investigates variance and error estimates in the experimental system, and is where the same extract is compared. " xsd:string

[Instance]
id: mged:semisolid
instance_of: mged:Media
property_value: mged:unique_identifier "MO_635" xsd:string
property_value: rdfs:comment "semisolid media type" xsd:string

[Instance]
id: mged:set_temperature
instance_of: mged:AtomicAction
property_value: mged:unique_identifier "MO_393" xsd:string
property_value: rdfs:comment "An action where the temperature is specified.  " xsd:string

[Instance]
id: mged:sex
instance_of: mged:BioMaterialCharacteristicCategory
property_value: rdfs:comment "A descriptor for FactorValue where Sex is compared.  " xsd:string
property_value: mged:unique_identifier "MO_680" xsd:string

[Instance]
id: mged:sex_design
instance_of: mged:BiologicalProperty
property_value: rdfs:comment "A sex experiment design type assays differences associated with an organism's sex, gender or mating type." xsd:string
property_value: mged:unique_identifier "MO_575" xsd:string

[Instance]
id: mged:short_oligo
instance_of: mged:DesignElement
property_value: rdfs:comment "An element that is an oligonucleotide of less than 50 nucleotides in length (usually 20 to 25 nt as in Affymetrix probes)." xsd:string
property_value: mged:unique_identifier "MO_749" xsd:string

[Instance]
id: mged:signal
instance_of: mged:DerivedBioAssayType
property_value: rdfs:comment "A quantitative measure of the relative abundance of a transcript (MAS 4.0 version of the Affymetrix analysis software)." xsd:string
property_value: mged:unique_identifier "MO_534" xsd:string

[Instance]
id: mged:signal_log_ratio
instance_of: mged:DeprecatedTerms
property_value: mged:deprecation_old_parent mged:DerivedBioAssayType
property_value: mged:has_reason_for_deprecation mged:deleted_term
property_value: mged:deprecation_replacement_term mged:DerivedBioAssayType
property_value: mged:deprecated_from_version mged:version_1.1.7
property_value: rdfs:comment "The change in expression level for a transcript between a baseline and an experiment array.  This change is expressed as the log2 ratio. A signal log \nratio of 1 is the same as a Fold Change of 2." xsd:string
property_value: mged:unique_identifier "MO_941" xsd:string
property_value: mged:deprecation_in_version "1.1.7" xsd:string
property_value: mged:deprecation_reason "deleted_term" xsd:string

[Instance]
id: mged:silicon
instance_of: mged:SubstrateType
property_value: mged:unique_identifier "MO_382" xsd:string
property_value: rdfs:comment "the array is made on silicon " xsd:string

[Instance]
id: mged:single_stranded
instance_of: mged:StrandType
property_value: mged:unique_identifier "MO_576" xsd:string
property_value: rdfs:comment "a nucleic acid consisting of a single polynucleotide chain." xsd:string

[Instance]
id: mged:sister
instance_of: mged:FamilyRelationship
property_value: mged:unique_identifier "MO_723" xsd:string
property_value: rdfs:comment "A female having the same genetic parents as another, or one genetic parent in common with another." xsd:string

[Instance]
id: mged:slice_analysis
instance_of: mged:DeprecatedTerms
property_value: mged:deprecated_from_version mged:version_1.2.0
property_value: mged:has_reason_for_deprecation mged:deleted_term
property_value: mged:deprecation_replacement_term mged:NormalizationDescriptionType
property_value: mged:deprecation_old_parent mged:NormalizationDescriptionType
property_value: mged:deprecation_in_version "1.2.0" xsd:string
property_value: rdfs:comment "A method of analyzing the significant expression level of a Feature by calculating the  intensity-dependent Z distribution value for the logarithm of the intensity ratios from the  two channels." xsd:string
property_value: mged:unique_identifier "MO_531" xsd:string
property_value: mged:deprecation_reason "deleted_term" xsd:string

[Instance]
id: mged:snRNA_gene
instance_of: mged:DeprecatedTerms
property_value: mged:has_reason_for_deprecation mged:deleted_term
property_value: mged:deprecation_replacement_term mged:TheoreticalBioSequenceType
property_value: mged:deprecated_from_version mged:version_1.2.0
property_value: mged:deprecation_old_parent "deleted_term" xsd:string
property_value: rdfs:comment "sequence from gene coding for small nuclear RNA\nexact synonym: small nuclear RNA gene" xsd:string
property_value: mged:unique_identifier "MO_961" xsd:string
property_value: mged:synonym "small nuclear RNA gene" xsd:string
property_value: mged:deprecation_in_version "1.2.0" xsd:string
property_value: mged:deprecation_reason "deleted_term" xsd:string

[Instance]
id: mged:software_manufacturer
instance_of: mged:Roles
property_value: rdfs:comment "Person or organization that manufactured the software." xsd:string
property_value: mged:unique_identifier "MO_475" xsd:string

[Instance]
id: mged:software_variation_design
instance_of: mged:MethodologicalDesign
property_value: rdfs:comment "A software variation design type compares different types of software for performance, accuracy, precision and reproducibility." xsd:string
property_value: mged:unique_identifier "MO_643" xsd:string

[Instance]
id: mged:soil
instance_of: mged:Media
property_value: mged:unique_identifier "MO_821" xsd:string
property_value: rdfs:comment "soil, growth media for plants and other soil living organisms" xsd:string

[Instance]
id: mged:son
instance_of: mged:FamilyRelationship
property_value: mged:unique_identifier "MO_465" xsd:string
property_value: rdfs:comment "The male offspring of the patient or individual under study." xsd:string

[Instance]
id: mged:sonicator
instance_of: mged:HardwareType
property_value: rdfs:comment "An instrument for sonicating biomaterials." xsd:string
property_value: mged:unique_identifier "MO_477" xsd:string

[Instance]
id: mged:sowing
instance_of: mged:InitialTimePoint
property_value: rdfs:comment "the process of placing a seed or spore in some media with the intention to invoke germination." xsd:string
property_value: mged:unique_identifier "MO_748" xsd:string

[Instance]
id: mged:species_design
instance_of: mged:BiologicalProperty
property_value: mged:unique_identifier "MO_675" xsd:string
property_value: rdfs:comment "A species experiment design type assays differences between distinct species." xsd:string

[Instance]
id: mged:species_specific_design_element_group_type
instance_of: mged:DesignElementGroupType
property_value: mged:unique_identifier "MO_395" xsd:string
property_value: rdfs:comment "A grouping of DesignElements, Features, Reporters, Composite Sequences on the basis of a common species." xsd:string

[Instance]
id: mged:specified_biomaterial_action
instance_of: mged:AtomicAction
property_value: rdfs:comment "Conceptual action for specified protocol applied in treatment." xsd:string
property_value: mged:unique_identifier "MO_968" xsd:string

[Instance]
id: mged:specified_biomaterial_action
instance_of: mged:AtomicAction
property_value: rdfs:comment "Conceptual action for specified protocol applied in treatment." xsd:string
property_value: mged:unique_identifier "MO_968" xsd:string

[Instance]
id: mged:specified_biomaterial_action
instance_of: mged:AtomicAction
property_value: rdfs:comment "Conceptual action for specified protocol applied in treatment." xsd:string
property_value: mged:unique_identifier "MO_968" xsd:string

[Instance]
id: mged:spectrophotometer
instance_of: mged:HardwareType
property_value: rdfs:comment "Hardware for measuring light at different wavelengths." xsd:string
property_value: mged:synonym "thermocycler" xsd:string
property_value: mged:unique_identifier "MO_716" xsd:string

[Instance]
id: mged:spike_quality_control
instance_of: mged:QualityControlDescriptionType
property_value: rdfs:comment "An experiment in which spikes were introduced into some or all of the hybridizations for quality control or data transformation purposes." xsd:string
property_value: mged:unique_identifier "MO_937" xsd:string

[Instance]
id: mged:spin
instance_of: mged:AtomicAction
property_value: mged:synonym "centrifuge" xsd:string
property_value: mged:unique_identifier "MO_879" xsd:string
property_value: rdfs:comment "The procedure of applying a centrifugal force to a physical object.\nExact synonym: centrifuge" xsd:string

[Instance]
id: mged:split
instance_of: mged:ComplexAction
property_value: mged:synonym "sample" xsd:string
property_value: rdfs:comment "The procedure of separating a BioMaterial into two or more BioMaterials of similar composition e.g. aliquoting a sample. The BioMaterial may be a BioSource (e.g., a tissue) or a BioSample (e.g. RNA extracted from a BioSource).\nNon exact Synonym: sample" xsd:string
property_value: mged:unique_identifier "MO_835" xsd:string

[Instance]
id: mged:split
instance_of: mged:ComplexAction
property_value: mged:synonym "sample" xsd:string
property_value: rdfs:comment "The procedure of separating a BioMaterial into two or more BioMaterials of similar composition e.g. aliquoting a sample. The BioMaterial may be a BioSource (e.g., a tissue) or a BioSample (e.g. RNA extracted from a BioSource).\nNon exact Synonym: sample" xsd:string
property_value: mged:unique_identifier "MO_835" xsd:string

[Instance]
id: mged:split_term
instance_of: mged:DeprecationReason
property_value: rdfs:comment "the term has been decomposed into more specific terms" xsd:string

[Instance]
id: mged:spotted_antibody_features
instance_of: mged:TechnologyType
property_value: mged:unique_identifier "MO_483" xsd:string
property_value: rdfs:comment "TechnologyType of FeatureGroup where antibodies are spotted directly." xsd:string

[Instance]
id: mged:spotted_colony_features
instance_of: mged:TechnologyType
property_value: rdfs:comment "TechnologyType of FeatureGroup where bacterial or other colonies are spotted directly." xsd:string
property_value: mged:unique_identifier "MO_618" xsd:string

[Instance]
id: mged:spotted_ds_DNA_features
instance_of: mged:TechnologyType
property_value: mged:unique_identifier "MO_499" xsd:string
property_value: rdfs:comment "A descriptor for the TechnologyType for a group of features where double stranded DNA is spotted on the array e.g. a PCR of a cDNA clone." xsd:string

[Instance]
id: mged:spotted_protein_features
instance_of: mged:TechnologyType
property_value: mged:unique_identifier "MO_996" xsd:string
property_value: rdfs:comment "TechnologyType of FeatureGroup where protein (other than antibody) is spotted directly." xsd:string

[Instance]
id: mged:spotted_ss_PCR_amplicon_features
instance_of: mged:TechnologyType
property_value: rdfs:comment "A descriptor for the TechnologyType for a group of features where single stranded DNA PCR product is spotted on the array." xsd:string
property_value: mged:unique_identifier "MO_921" xsd:string

[Instance]
id: mged:spotted_ss_oligo_features
instance_of: mged:TechnologyType
property_value: rdfs:comment "The TechnologyType of the FeatureGroup  is spotted single stranded oligonucleotides (of any length) on the substrate." xsd:string
property_value: mged:unique_identifier "MO_579" xsd:string

[Instance]
id: mged:square_feature
instance_of: mged:FeatureShape
property_value: rdfs:comment "The shape of the feature on the array is square." xsd:string
property_value: mged:unique_identifier "MO_817" xsd:string

[Instance]
id: mged:ss_oligo
instance_of: mged:DeprecatedTerms
property_value: mged:deprecation_old_parent mged:PhysicalBioSequenceType
property_value: mged:deprecation_replacement_term mged:PhysicalBioSequenceType
property_value: mged:has_reason_for_deprecation mged:deleted_term
property_value: mged:deprecated_from_version mged:version_1.2.0
property_value: rdfs:comment "sequence of a single stranded synthesized oligonucleotide" xsd:string
property_value: mged:deprecation_in_version "1.2.0" xsd:string
property_value: mged:deprecation_reason "deleted_term" xsd:string
property_value: mged:unique_identifier "MO_570" xsd:string

[Instance]
id: mged:starvation
instance_of: mged:ExperimentalProtocolType
property_value: rdfs:comment "Depriving an organism of food or nutrients" xsd:string
property_value: mged:unique_identifier "MO_370" xsd:string

[Instance]
id: mged:starvation
instance_of: mged:ExperimentalProtocolType
property_value: rdfs:comment "Depriving an organism of food or nutrients" xsd:string
property_value: mged:unique_identifier "MO_370" xsd:string

[Instance]
id: mged:stimulated_design_type
instance_of: mged:PerturbationalDesign
property_value: mged:unique_identifier "MO_958" xsd:string
property_value: rdfs:comment "A design in which a behavior is invoked by a variable controlled by the experimenter - e.g. administration of a drug that effects aggressivity." xsd:string

[Instance]
id: mged:stimulus_or_stress_design
instance_of: mged:PerturbationalDesign
property_value: rdfs:comment "A stimulus or stress experiment design type is where the response of an organism(s) to the stress or stimulus is studied, e.g. osmotic stress, heat shock, radiation exposure, behavioral treatment etc." xsd:string
property_value: mged:unique_identifier "MO_568" xsd:string

[Instance]
id: mged:store
instance_of: mged:ExperimentalProtocolType
property_value: rdfs:comment "The procedure of placing a physical object under specified conditions e.g. time, temperature, humidity, for the purposes of keeping it in the same state." xsd:string
property_value: mged:unique_identifier "MO_442" xsd:string

[Instance]
id: mged:store
instance_of: mged:ExperimentalProtocolType
property_value: rdfs:comment "The procedure of placing a physical object under specified conditions e.g. time, temperature, humidity, for the purposes of keeping it in the same state." xsd:string
property_value: mged:unique_identifier "MO_442" xsd:string

[Instance]
id: mged:strain_or_line
instance_of: mged:BioMaterialCharacteristicCategory
property_value: mged:unique_identifier "MO_859" xsd:string
property_value: rdfs:comment "A descriptor of FactorValue where comparisons of strains or lines are made. " xsd:string

[Instance]
id: mged:strain_or_line_design
instance_of: mged:BiologicalProperty
property_value: rdfs:comment "A strain or line experiment design type assays differences between multiple strains, cultivars, serovars, isolates, lines from organisms of a single species." xsd:string
property_value: mged:unique_identifier "MO_462" xsd:string

[Instance]
id: mged:string_datatype
instance_of: mged:DataType
property_value: rdfs:comment "The values are a sequence of one or more characters." xsd:string
property_value: mged:unique_identifier "MO_352" xsd:string

[Instance]
id: mged:subcutaneous
instance_of: mged:DeliveryMethod
property_value: rdfs:comment "Delivery method whereby a drug or compound is administered under the skin of the organism." xsd:string
property_value: mged:unique_identifier "MO_960" xsd:string

[Instance]
id: mged:submitter
instance_of: mged:Roles
property_value: mged:unique_identifier "MO_882" xsd:string
property_value: rdfs:comment "Person who is the primary contact for data submitted to a database." xsd:string

[Instance]
id: mged:synthetic_DNA
instance_of: mged:MaterialType
property_value: rdfs:comment "DNA which is generated by chemical or enzymatic (non cellular) means.\nnon-exact synonym: cDNA" xsd:string
property_value: mged:unique_identifier "MO_577" xsd:string
property_value: mged:synonym "cDNA" xsd:string

[Instance]
id: mged:synthetic_RNA
instance_of: mged:MaterialType
property_value: mged:unique_identifier "MO_543" xsd:string
property_value: rdfs:comment "RNA which is generated by chemical or enzymatic (non cellular) means. E.g. T7 promotor generated RNA.\nNon-exact synonym:\ncRNA, complementary RNA\naRNA, amplified RNA" xsd:string
property_value: mged:synonym "amplified RNA" xsd:string
property_value: mged:synonym "cRNA" xsd:string
property_value: mged:synonym "aRNA" xsd:string
property_value: mged:synonym "complementary RNA" xsd:string

[Instance]
id: mged:tRNA_gene
instance_of: mged:DeprecatedTerms
property_value: mged:has_reason_for_deprecation mged:deleted_term
property_value: mged:deprecation_old_parent mged:TheoreticalBioSequenceType
property_value: mged:deprecation_replacement_term mged:TheoreticalBioSequenceType
property_value: mged:deprecated_from_version mged:version_1.2.0
property_value: mged:deprecation_in_version "1.2.0" xsd:string
property_value: rdfs:comment "sequence from a gene coding for transfer RNA\nexact synonym: transfer RNA gene" xsd:string
property_value: mged:unique_identifier "MO_850" xsd:string
property_value: mged:synonym "transfer RNA gene" xsd:string
property_value: mged:deprecation_reason "deleted_term" xsd:string

[Instance]
id: mged:tau_rank_correlation
instance_of: mged:DeprecatedTerms
property_value: mged:deprecated_from_version mged:version_1.1.7
property_value: mged:deprecation_replacement_term mged:NodeValueType
property_value: mged:has_reason_for_deprecation mged:deleted_term
property_value: mged:deprecation_old_parent mged:NodeValueType
property_value: mged:deprecation_in_version "1.1.7" xsd:string
property_value: mged:unique_identifier "MO_673" xsd:string
property_value: rdfs:comment "a nonparametric measure of the agreement between two rankings" xsd:string
property_value: mged:deprecation_reason "deleted_term" xsd:string

[Instance]
id: mged:technical_replicate
instance_of: mged:ReplicateDescriptionType
property_value: mged:unique_identifier "MO_641" xsd:string
property_value: rdfs:comment "A replicate where the same BioSample is use e.g. the same pool of RNA used to assess technical (as opposed to biological) variation within an experiment." xsd:string

[Instance]
id: mged:technical_replicate
instance_of: mged:ReplicateDescriptionType
property_value: mged:unique_identifier "MO_641" xsd:string
property_value: rdfs:comment "A replicate where the same BioSample is use e.g. the same pool of RNA used to assess technical (as opposed to biological) variation within an experiment." xsd:string

[Instance]
id: mged:temperature
instance_of: mged:EnvironmentalFactorCategory
property_value: mged:unique_identifier "MO_791" xsd:string
property_value: rdfs:comment "Temperature associated with a particular environment." xsd:string

[Instance]
id: mged:thermal_cycler
instance_of: mged:HardwareType
property_value: rdfs:comment "An instrument designed to automatically raise and lower the temperature of wells or tubes.  Usually used to perform PCR.\nExact Synonym: thermocycler" xsd:string
property_value: mged:unique_identifier "MO_854" xsd:string

[Instance]
id: mged:tiling_path_design
instance_of: mged:BioMolecularAnnotation
property_value: mged:unique_identifier "MO_507" xsd:string
property_value: rdfs:comment "An experiment in which gene expression on a genome-wide basis is evaluated, without bias toward coding or noncoding regions, using arrays containing oligonucleotides that are either overlapping or spaced at regular intervals." xsd:string

[Instance]
id: mged:time_series_design
instance_of: mged:MethodologicalDesign
property_value: mged:unique_identifier "MO_887" xsd:string
property_value: rdfs:comment "Groups of assays that are related as part of a time series." xsd:string

[Instance]
id: mged:timepoint
instance_of: mged:ComplexAction
property_value: mged:unique_identifier "MO_738" xsd:string
property_value: rdfs:comment "Time point at which a sample or observation is made or taken from a biomaterial as measured from some reference point." xsd:string

[Instance]
id: mged:total_RNA
instance_of: mged:MaterialType
property_value: mged:unique_identifier "MO_373" xsd:string
property_value: rdfs:comment "Total cellular and nuclear RNA." xsd:string

[Instance]
id: mged:total_intensity_normalization
instance_of: mged:DeprecatedTerms
property_value: mged:deprecated_from_version mged:version_1.2.0
property_value: mged:deprecation_old_parent mged:NormalizationDescriptionType
property_value: mged:deprecation_replacement_term mged:NormalizationDescriptionType
property_value: mged:has_reason_for_deprecation mged:deleted_term
property_value: mged:deprecation_in_version "1.2.0" xsd:string
property_value: rdfs:comment "A method of re-scaling intensity data from one channel relative to another based on the ratio  of the sums of the fluorescent intensities from each channel for all Features: N = sum(Ri) /  sum(Gi) .  The ratio is used to re-scale the intensities in one channel for each Feature.   This is a single parameter linear normalization method." xsd:string
property_value: mged:deprecation_reason "deleted_term" xsd:string
property_value: mged:unique_identifier "MO_441" xsd:string

[Instance]
id: mged:total_intensity_normalization_paired
instance_of: mged:DataTransformationProtocolType
property_value: rdfs:comment "A method to normalize paired-assay data that uses as a normalization coefficient the sum of intensity values from one assay divided by the sum of intensities from the other, where those sums are taken over all data points, or an appropriate subset of these (e.g. special control Features on a microarray, or 2DE spots containing constitutively expressed proteins). This normalization coefficient is used to rescale the intensity data in one data set relative to the other. Note that a normalization method that employs the average intensity rather than the sum (of all data points, or an appropriate subset) falls into this category as well." xsd:string
property_value: mged:unique_identifier "MO_686" xsd:string

[Instance]
id: mged:total_intensity_normalization_single
instance_of: mged:DataTransformationProtocolType
property_value: mged:unique_identifier "MO_472" xsd:string
property_value: rdfs:comment "A normalization method that uses as a coefficient the sum of all intensities in the data set, or an appropriate subset of these (e.g. special control Features on a microarray, or 2DE spots containing constitutively expressed proteins). The intensities are normalized through division by such a coefficient (and possible subsequent multiplication by a target constant). Note that a normalization method that\nemploys the average intensity rather than the sum (of all data points, or an appropriate subset) falls into this category as well." xsd:string

[Instance]
id: mged:transcript
instance_of: mged:TheoreticalBioSequenceType
property_value: rdfs:comment "sequence that represents the product of an RNA polymerase engaged in transcription " xsd:string
property_value: mged:unique_identifier "MO_827" xsd:string

[Instance]
id: mged:transcript_identification_design
instance_of: mged:BioMolecularAnnotation
property_value: mged:unique_identifier "MO_533" xsd:string
property_value: mged:synonym "gene expression" xsd:string
property_value: mged:synonym "gene_expression" xsd:string
property_value: rdfs:comment "A transcript identification design type characterizes the length and \n    position of transcripts and allows identification of all forms of \n    transcripts in the genome." xsd:string
property_value: mged:synonym "expression_profiling" xsd:string
property_value: mged:synonym "transcription_profiling" xsd:string
property_value: mged:synonym "expression profiling" xsd:string
property_value: mged:synonym "transcription profiling" xsd:string

[Instance]
id: mged:transcript_identification_design
instance_of: mged:BioMolecularAnnotation
property_value: mged:unique_identifier "MO_533" xsd:string
property_value: mged:synonym "gene expression" xsd:string
property_value: mged:synonym "gene_expression" xsd:string
property_value: rdfs:comment "A transcript identification design type characterizes the length and \n    position of transcripts and allows identification of all forms of \n    transcripts in the genome." xsd:string
property_value: mged:synonym "expression_profiling" xsd:string
property_value: mged:synonym "transcription_profiling" xsd:string
property_value: mged:synonym "expression profiling" xsd:string
property_value: mged:synonym "transcription profiling" xsd:string

[Instance]
id: mged:transfect
instance_of: mged:ExperimentalProtocolType
property_value: mged:unique_identifier "MO_849" xsd:string
property_value: rdfs:comment "The process of bringing about genetic alteration of any cell or organism by a variety of means including recombinant DNA technology, viruses, chemical mutagens, and X-rays." xsd:string

[Instance]
id: mged:transfect
instance_of: mged:ExperimentalProtocolType
property_value: mged:unique_identifier "MO_849" xsd:string
property_value: rdfs:comment "The process of bringing about genetic alteration of any cell or organism by a variety of means including recombinant DNA technology, viruses, chemical mutagens, and X-rays." xsd:string

[Instance]
id: mged:transfection
instance_of: mged:GeneticModification
property_value: rdfs:comment "Introduction of genetic material into an organism often in the form of a plasmid." xsd:string
property_value: mged:unique_identifier "MO_366" xsd:string

[Instance]
id: mged:translational_bias_design
instance_of: mged:BioMolecularAnnotation
property_value: mged:unique_identifier "MO_939" xsd:string
property_value: rdfs:comment "A translational bias is an experiment design which characterizes the association of transcripts and translation machinery." xsd:string

[Instance]
id: mged:trisomy
instance_of: mged:DeprecatedTerms
property_value: mged:deprecation_old_parent mged:ChromosomalAberrationClassification
property_value: mged:replaced_with_term mged:polysomy
property_value: mged:deprecated_from_version mged:version_1.1.9
property_value: mged:has_reason_for_deprecation mged:replaced_term
property_value: mged:was_replaced_by mged:polysomy
property_value: mged:deprecation_reason "replaced_term" xsd:string
property_value: rdfs:comment "The possession of a third chromosome of any one type in an otherwise diploid cell." xsd:string
property_value: mged:unique_identifier "MO_494" xsd:string
property_value: mged:deprecation_in_version "1.1.9" xsd:string

[Instance]
id: mged:tumor_grading
instance_of: mged:BioMaterialCharacteristicCategory
property_value: rdfs:comment "A descriptor used in cancer biology to describe abnormalities of tumor cells." xsd:string
property_value: mged:unique_identifier "MO_843" xsd:string

[Instance]
id: mged:uM
instance_of: mged:ConcentrationUnit
property_value: mged:unique_identifier "MO_740" xsd:string
property_value: rdfs:comment "Micromole per liter or micromolar, concentration unit" xsd:string

[Instance]
id: mged:ug
instance_of: mged:MassUnit
property_value: rdfs:comment "microgram, unit of mass" xsd:string
property_value: mged:unique_identifier "MO_438" xsd:string

[Instance]
id: mged:ul
instance_of: mged:VolumeUnit
property_value: mged:unique_identifier "MO_926" xsd:string
property_value: rdfs:comment "microliter, unit of volume" xsd:string

[Instance]
id: mged:um
instance_of: mged:DistanceUnit
property_value: rdfs:comment "micrometer, unit of distance" xsd:string
property_value: mged:unique_identifier "MO_421" xsd:string

[Instance]
id: mged:umol
instance_of: mged:QuantityUnit
property_value: mged:unique_identifier "MO_752" xsd:string
property_value: rdfs:comment "micromoles, quantity unit" xsd:string

[Instance]
id: mged:uncentered_Pearson_correlation
instance_of: mged:NodeValueType
property_value: mged:unique_identifier "MO_974" xsd:string
property_value: rdfs:comment "The uncentered Pearson correlation is defined as the Pearson correlation for two data series where the mean of each data series is assumed to be zero." xsd:string

[Instance]
id: mged:uncle
instance_of: mged:FamilyRelationship
property_value: mged:unique_identifier "MO_950" xsd:string
property_value: rdfs:comment "The brother of one's father or mother." xsd:string

[Instance]
id: mged:unknown_basis_feature
instance_of: mged:SeqFeatureBasis
property_value: rdfs:comment "Sequence feature whose derivation is unknown." xsd:string
property_value: mged:unique_identifier "MO_525" xsd:string

[Instance]
id: mged:unknown_experiment_design_type
instance_of: mged:BiologicalProperty
property_value: mged:unique_identifier "MO_634" xsd:string
property_value: rdfs:comment "ExperimentDesignType of unknown type." xsd:string

[Instance]
id: mged:unknown_experiment_design_type
instance_of: mged:BiologicalProperty
property_value: mged:unique_identifier "MO_634" xsd:string
property_value: rdfs:comment "ExperimentDesignType of unknown type." xsd:string

[Instance]
id: mged:unknown_experiment_design_type
instance_of: mged:BiologicalProperty
property_value: mged:unique_identifier "MO_634" xsd:string
property_value: rdfs:comment "ExperimentDesignType of unknown type." xsd:string

[Instance]
id: mged:unknown_experiment_design_type
instance_of: mged:BiologicalProperty
property_value: mged:unique_identifier "MO_634" xsd:string
property_value: rdfs:comment "ExperimentDesignType of unknown type." xsd:string

[Instance]
id: mged:unknown_experiment_design_type
instance_of: mged:BiologicalProperty
property_value: mged:unique_identifier "MO_634" xsd:string
property_value: rdfs:comment "ExperimentDesignType of unknown type." xsd:string

[Instance]
id: mged:unknown_protocol_type
instance_of: mged:ExperimentalProtocolType
property_value: rdfs:comment "ProtocolType of unknown type." xsd:string
property_value: mged:unique_identifier "MO_460" xsd:string

[Instance]
id: mged:unknown_sequence
instance_of: mged:PhysicalBioSequenceType
property_value: mged:unique_identifier "MO_535" xsd:string
property_value: rdfs:comment "BioSequence of unknown type" xsd:string

[Instance]
id: mged:unknown_sequence
instance_of: mged:PhysicalBioSequenceType
property_value: mged:unique_identifier "MO_535" xsd:string
property_value: rdfs:comment "BioSequence of unknown type" xsd:string

[Instance]
id: mged:unknown_sex
instance_of: mged:Sex
property_value: rdfs:comment "organism(s) whose sex is unknown" xsd:string
property_value: mged:unique_identifier "MO_999" xsd:string

[Instance]
id: mged:unknown_substrate_type
instance_of: mged:SubstrateType
property_value: rdfs:comment "SubstrateType of unknown type." xsd:string
property_value: mged:unique_identifier "MO_484" xsd:string

[Instance]
id: mged:unknown_surface_type
instance_of: mged:SurfaceType
property_value: rdfs:comment "A SurfaceType of unknown type." xsd:string
property_value: mged:unique_identifier "MO_359" xsd:string

[Instance]
id: mged:unscaled
instance_of: mged:Scale
property_value: rdfs:comment "The values are unordered and have no scale." xsd:string
property_value: mged:unique_identifier "MO_542" xsd:string

[Instance]
id: mged:urine
instance_of: mged:BioSourceType
property_value: mged:unique_identifier "MO_399" xsd:string
property_value: rdfs:comment "The fluid and dissolved substances excreted by the kidney." xsd:string

[Instance]
id: mged:us
instance_of: mged:TimeUnit
property_value: rdfs:comment "microsecond, unit of time" xsd:string
property_value: mged:unique_identifier "MO_795" xsd:string

[Instance]
id: mged:vacuum_dryer
instance_of: mged:HardwareType
property_value: rdfs:comment "An instrument designed to remove excess liquid by vacuum and heating." xsd:string
property_value: mged:unique_identifier "MO_696" xsd:string

[Instance]
id: mged:vector
instance_of: mged:DeprecatedTerms
property_value: mged:deprecation_replacement_term mged:PhysicalBioSequenceType
property_value: mged:has_reason_for_deprecation mged:deleted_term
property_value: mged:deprecated_from_version mged:version_1.2.0
property_value: mged:deprecation_old_parent mged:PhysicalBioSequenceType
property_value: mged:deprecation_in_version "1.2.0" xsd:string
property_value: mged:deprecation_reason "deleted_term" xsd:string
property_value: mged:unique_identifier "MO_551" xsd:string
property_value: rdfs:comment "Sequence from a vector, DNA of any transmissible agent e.g. plasmid or virus into which a segment of foreign DNA can be spliced, does not include insert sequence. These terms should be used when other terms such as plasmid, YAC, BAC are used.  " xsd:string

[Instance]
id: mged:version_1.1.7
instance_of: mged:MGEDOntologyVersion
property_value: rdfs:comment "Version of the MGED Ontology." xsd:string

[Instance]
id: mged:version_1.1.8
instance_of: mged:MGEDOntologyVersion
property_value: rdfs:comment "Version of the MGED Ontology." xsd:string
property_value: mged:unique_identifier "MO_469" xsd:string

[Instance]
id: mged:version_1.1.9
instance_of: mged:MGEDOntologyVersion
property_value: rdfs:comment "Version of the MGEDOntology." xsd:string

[Instance]
id: mged:version_1.2.0
instance_of: mged:MGEDOntologyVersion
property_value: rdfs:comment "Version of the MGEDOntology." xsd:string

[Instance]
id: mged:version_1.3.0
instance_of: mged:MGEDOntologyVersion
property_value: mged:unique_identifier "MO_440" xsd:string
property_value: rdfs:comment "Version of the MGEDOntology." xsd:string

[Instance]
id: mged:version_1.3.1
instance_of: mged:MGEDOntologyVersion

[Instance]
id: mged:virus
instance_of: mged:MaterialType
property_value: mged:unique_identifier "MO_372" xsd:string
property_value: rdfs:comment "one or more DNA or RNA based non cellular infective agent, including bacteriophage" xsd:string

[Instance]
id: mged:vortexer
instance_of: mged:HardwareType
property_value: rdfs:comment "An instrument that mixes by rapid oscillation." xsd:string
property_value: mged:unique_identifier "MO_983" xsd:string

[Instance]
id: mged:wait
instance_of: mged:AtomicAction
property_value: mged:unique_identifier "MO_988" xsd:string
property_value: rdfs:comment "Allow time to pass. It's measurement should be a unit of time.  " xsd:string

[Instance]
id: mged:wash
instance_of: mged:ComplexAction
property_value: mged:unique_identifier "MO_596" xsd:string
property_value: rdfs:comment "The process of applying a solvent (e.g. water) or a solution (e.g. SSC/SDS) to a BioMaterial or an array to remove impurities or unwanted compounds." xsd:string

[Instance]
id: mged:wash
instance_of: mged:ComplexAction
property_value: mged:unique_identifier "MO_596" xsd:string
property_value: rdfs:comment "The process of applying a solvent (e.g. water) or a solution (e.g. SSC/SDS) to a BioMaterial or an array to remove impurities or unwanted compounds." xsd:string

[Instance]
id: mged:wash_station
instance_of: mged:HardwareType
property_value: rdfs:comment "An instrument designed to mechanically wash or stain arrays." xsd:string
property_value: mged:unique_identifier "MO_626" xsd:string

[Instance]
id: mged:water
instance_of: mged:EnvironmentalFactorCategory
property_value: mged:unique_identifier "MO_380" xsd:string
property_value: rdfs:comment "Water consumed by or enveloping the organism that the biosource is derived from. " xsd:string

[Instance]
id: mged:waterbath
instance_of: mged:HardwareType
property_value: rdfs:comment "A device for controlling temperature by immersion in water." xsd:string
property_value: mged:unique_identifier "MO_541" xsd:string

[Instance]
id: mged:weeks
instance_of: mged:TimeUnit
property_value: rdfs:comment "7 days, unit of time" xsd:string
property_value: mged:unique_identifier "MO_842" xsd:string

[Instance]
id: mged:whole_organism
instance_of: mged:MaterialType
property_value: mged:unique_identifier "MO_566" xsd:string
property_value: rdfs:comment "one or more of any unicellular or multicellular pro or eukaryote, including archaebacteria" xsd:string

[Instance]
id: mged:wild_type
instance_of: mged:Allele
property_value: mged:unique_identifier "MO_605" xsd:string
property_value: rdfs:comment "The genotype or phenotype that is found in nature or in standard laboratory stocks for a given organism.  For a single locus, the allele found most frequently in natural populations, or in standard laboratory stocks for a given organism." xsd:string

[Instance]
id: mged:wild_type
instance_of: mged:Allele
property_value: mged:unique_identifier "MO_605" xsd:string
property_value: rdfs:comment "The genotype or phenotype that is found in nature or in standard laboratory stocks for a given organism.  For a single locus, the allele found most frequently in natural populations, or in standard laboratory stocks for a given organism." xsd:string

[Instance]
id: mged:within_bioassay_data_set_function
instance_of: mged:DataTransformationProtocolType
property_value: rdfs:comment "A function applied to subsets of values from the same Measured/Derived bioassay data set." xsd:string
property_value: mged:unique_identifier "MO_668" xsd:string

[Instance]
id: mged:x_times
instance_of: mged:ConcentrationUnitOther
property_value: mged:unique_identifier "MO_496" xsd:string
property_value: rdfs:comment "multiple of stock solution concentration, concentration unit" xsd:string

[Instance]
id: mged:years
instance_of: mged:TimeUnit
property_value: rdfs:comment "365 days, time unit" xsd:string
property_value: mged:unique_identifier "MO_948" xsd:string

[Instance]
id: mged:yes
instance_of: mged:DeprecatedTerms
property_value: mged:deprecated_from_version mged:version_1.1.7
property_value: mged:has_reason_for_deprecation mged:deleted_term
property_value: mged:deprecation_in_version "1.1.7" xsd:string
property_value: rdfs:comment "true" xsd:string
property_value: mged:unique_identifier "MO_540" xsd:string
property_value: mged:deprecation_reason "deleted_term" xsd:string

