BLASTX 2.0.4 [Feb-24-1998]

Query= YAL011W YAL011W, Chr I from 132164 to 134080
         (1917 letters)

Database: Non-redundant GenBank CDS
translations+PDB+SwissProt+SPupdate+PIR
           302,480 sequences; 91,247,549 total letters

Searching..................................................done
done at Wed May  6 08:41:50 1998 (local time)



                                                                   Score     E
Sequences producing significant alignments:                        (bits)  Value

sp|P31376|YAB1_YEAST  HYPOTHETICAL 74.1 KD PROTEIN IN CYS3-MDM10...   957  0.0
gi|758803  (U23828) peritrophin-95 precursor [Lucilia cuprina]         38  0.19
gi|984808  (U23829) peritrophin-95 precursor [Lucilia cuprina]         38  0.19
gi|1546779  (U28789) PACT [Mus musculus]                               37  0.32
gnl|PID|e275625  (Z81038) C25A1.10 [Caenorhabditis elegans]            35  1.6
gi|1262277  (U51555) nucleolar phosphoprotein [Tetrahymena therm...    34  2.1
sp|P35554|FTN_DROME  FLIGHTIN (MUSCLE PROTEIN 27) >gi|422447|pir...    34  3.6
pir||S32504  ryanodine receptor - rabbit                               33  6.2
gi|1099002  (U41510) coded for by C. elegans cDNA yk61e11.3; cod...    33  6.2
sp|P41891|GAR2_SCHPO  GAR2 PROTEIN >gi|2130461|pir||S55785 nucle...    33  6.2
gnl|PID|e342725  (Z99091) pre-ribopsomal particle assembly prote...    33  6.2
sp|P11716|RYNR_RABIT  RYANODINE RECEPTOR, SKELETAL MUSCLE (SKELE...    33  6.2
prf||1509336A  ryanodine receptor [Oryctolagus cuniculus]              33  6.2


>sp|P31376|YAB1_YEAST HYPOTHETICAL 74.1 KD PROTEIN IN CYS3-MDM10 INTERGENIC REGION
            PRECURSOR >gi|486971|pir||S36723 FUN36 protein - yeast
            (Saccharomyces cerevisiae) >gi|171864 (L05146) Yal011wp
            [Saccharomyces cerevisiae]
            Length = 638
            
 Score =  957 bits (2446), Expect = 0.0
 Identities = 500/638 (78%), Positives = 500/638 (78%)

Query: 1    MRFGSNARRRQVRMPAVLRTRSKESSIEQKPASXXXXXXXXXXXXXXXXXXXXXXXXXXA 180
            MRFGSNARRRQVRMPAVLRTRSKESSIEQKPAS                          A
Sbjct: 1    MRFGSNARRRQVRMPAVLRTRSKESSIEQKPASRTRTRSRRGKRGRDDDDDDDDEESDDA 60

Query: 181  YDEVGNDYDEYASRAKLATNRPFEIVAGLPASVELPNYNSSLTHPQSIKNSGVLYDSLVS 360
            YDEVGNDYDEYASRAKLATNRPFEIVAGLPASVELPNYNSSLTHPQSIKNSGVLYDSLVS
Sbjct: 61   YDEVGNDYDEYASRAKLATNRPFEIVAGLPASVELPNYNSSLTHPQSIKNSGVLYDSLVS 120

Query: 361  SRRTWVQGEMFELYWRRPKKIVSESTPAATESPTSGTIPLIRDKMQKMCDCVMSGGPHTF 540
            SRRTWVQGEMFELYWRRPKKIVSESTPAATESPTSGTIPLIRDKMQKMCDCVMSGGPHTF
Sbjct: 121  SRRTWVQGEMFELYWRRPKKIVSESTPAATESPTSGTIPLIRDKMQKMCDCVMSGGPHTF 180

Query: 541  KVRLFILKNDKIXXXXXXXXXXXXXXXXXXXXNDAEAKRLRMEERKRQQMXXXXXXXXXX 720
            KVRLFILKNDKI                    NDAEAKRLRMEERKRQQM          
Sbjct: 181  KVRLFILKNDKIEQKWQDEQELKKKEKELKRKNDAEAKRLRMEERKRQQMQKKIAKEQKL 240

Query: 721  XXXXXXXXXXXXXXXXXXXXXXXXXXXXXXQNKNKQGSPSSSMHDPRMIMNLNLMAQEDP 900
                                          QNKNKQGSPSSSMHDPRMIMNLNLMAQEDP
Sbjct: 241  QLQKENKAKQKLEQEALKLKRKEEMKKLKEQNKNKQGSPSSSMHDPRMIMNLNLMAQEDP 300

Query: 901  KLNTLMETVAKGLANNSQLXXXXXXXXXXXXRSLEENPVNKRPSVTTTRPAPPSKAKDVA 1080
            KLNTLMETVAKGLANNSQL            RSLEENPVNKRPSVTTTRPAPPSKAKDVA
Sbjct: 301  KLNTLMETVAKGLANNSQLEEFKKFIEIAKKRSLEENPVNKRPSVTTTRPAPPSKAKDVA 360

Query: 1081 EDHRLNSITLVKSSKTAATEPEPKKADDENAEKQQSKEAKTTAESTQXXXXXXXXXXXXX 1260
            EDHRLNSITLVKSSKTAATEPEPKKADDENAEKQQSKEAKTTAESTQ             
Sbjct: 361  EDHRLNSITLVKSSKTAATEPEPKKADDENAEKQQSKEAKTTAESTQVDVKKEEEDVKEK 420

Query: 1261 XXXXXXTQKKEDNQVVPKRKRRKNAIKEDKDMQLTAFQQKYVQGAEIILEYLEFTHSRYY 1440
                  TQKKEDNQVVPKRKRRKNAIKEDKDMQLTAFQQKYVQGAEIILEYLEFTHSRYY
Sbjct: 421  GVKSEDTQKKEDNQVVPKRKRRKNAIKEDKDMQLTAFQQKYVQGAEIILEYLEFTHSRYY 480

Query: 1441 LPKKSVVEFLEDTDEIIISWIVIHNSXXXXXXXXXXXXXXXXXXXXXNKEDAKPGSDVEK 1620
            LPKKSVVEFLEDTDEIIISWIVIHNS                     NKEDAKPGSDVEK
Sbjct: 481  LPKKSVVEFLEDTDEIIISWIVIHNSKEIEKFKTKKIKAKLKADQKLNKEDAKPGSDVEK 540

Query: 1621 EVSFNPLFEADCPTPLYTPMTMKLSGIHKRFNQIIRNSVSPMEEVVKEMEKILQIGTRLS 1800
            EVSFNPLFEADCPTPLYTPMTMKLSGIHKRFNQIIRNSVSPMEEVVKEMEKILQIGTRLS
Sbjct: 541  EVSFNPLFEADCPTPLYTPMTMKLSGIHKRFNQIIRNSVSPMEEVVKEMEKILQIGTRLS 600

Query: 1801 GYNLWYQLDGYDDEALSESLRFELNEWEHAMRSRRHKR 1914
            GYNLWYQLDGYDDEALSESLRFELNEWEHAMRSRRHKR
Sbjct: 601  GYNLWYQLDGYDDEALSESLRFELNEWEHAMRSRRHKR 638



>gi|758803 (U23828) peritrophin-95 precursor [Lucilia cuprina]
            Length = 480
            
 Score = 37.9 bits (86), Expect = 0.19
 Identities = 18/72 (25%), Positives = 30/72 (41%)

Query: 1003 EENPVNKRPSVTTTRPAPPSKAKDVAEDHRLNSITLVKSSKTAATEPEPKKADDENAEKQ 1182
            E  P    P  +T     P K+     D   +++   +  +T  TE EP+K      E +
Sbjct: 363  ESTPAKTDPEESTPATTEPEKSTPATTDPEKSTLATTEPEETKPTETEPEKTTPATTEPE 422

Query: 1183 QSKEAKTTAEST 1218
            ++K  +T  E T
Sbjct: 423  ETKPTETEPEKT 434



>gi|984808 (U23829) peritrophin-95 precursor [Lucilia cuprina]
            Length = 456
            
 Score = 37.9 bits (86), Expect = 0.19
 Identities = 18/72 (25%), Positives = 30/72 (41%)

Query: 1003 EENPVNKRPSVTTTRPAPPSKAKDVAEDHRLNSITLVKSSKTAATEPEPKKADDENAEKQ 1182
            E  P    P  +T     P K+     D   +++   +  +T  TE EP+K      E +
Sbjct: 339  ESTPAKTDPEESTPATTEPEKSTPATTDPEKSTLATTEPEETKPTETEPEKTTPATTEPE 398

Query: 1183 QSKEAKTTAEST 1218
            ++K  +T  E T
Sbjct: 399  ETKPTETEPEKT 410



>gi|1546779 (U28789) PACT [Mus musculus]
            Length = 1587
            
 Score = 37.1 bits (84), Expect = 0.32
 Identities = 31/137 (22%), Positives = 56/137 (40%), Gaps = 4/137 (2%)

Query: 994  RSLEENPVNKRPSVTTTRPAPPSKAKDVAEDHRLNSITLVKSSKTAATEPEPKKADDENA 1173
            +S    P  K+     T+      +    +D ++        SK+A    E K A DE  
Sbjct: 849  KSPRSEPPLKKAKEEATKIDSVKPSSSSQKDEKVTGTPRKAHSKSAKEHQEAKPAKDEKV 908

Query: 1174 EKQQSKEAKTTAESTQXXXXXXXXXXXXXXXXXXXTQKKEDNQVVP----KRKRRKNAIK 1341
            +K  SK+ K+   +++                    +K E N+++     KRKR+     
Sbjct: 909  KKDCSKDIKSEKPASKDEKA----------------KKPEKNKLLDSKGEKRKRKTEEKS 952

Query: 1342 EDKDMQLTAFQQKYVQGAEII 1404
             DKD + ++ +   V+G EI+
Sbjct: 953  VDKDFESSSMKISKVEGTEIV 973



>gnl|PID|e275625 (Z81038) C25A1.10 [Caenorhabditis elegans]
            Length = 971
            
 Score = 34.8 bits (78), Expect = 1.6
 Identities = 25/72 (34%), Positives = 36/72 (49%), Gaps = 6/72 (8%)

Query: 1003 EENPVNKRPSVTTTRPAPPSKAKDVAEDHRLNSITLVKSSKTAATEPEPKKAD------D 1164
            E+ PV K  S   T P P +K  D++ D   +     K+   AA +P  KKA+      D
Sbjct: 534  EKKPVAKPTSAKAT-PKPAAKKADLSSDFSDDEAPAKKTPAKAAPKPASKKAESSSDSSD 592

Query: 1165 ENAEKQQSKEAKTTAEST 1218
            +     +S  AKTT + T
Sbjct: 593  DEKPAAKSTPAKTTPKPT 610



>gi|1262277 (U51555) nucleolar phosphoprotein [Tetrahymena thermophila]
            Length = 476
            
 Score = 34.4 bits (77), Expect = 2.1
 Identities = 33/121 (27%), Positives = 50/121 (41%)

Query: 997  SLEENPVNKRPSVTTTRPAPPSKAKDVAEDHRLNSITLVKSSKTAATEPEPKKADDENAE 1176
            S EE P  K+     T PA     K VA+    +S      S++   +P PKKA  + A 
Sbjct: 147  SEEEKPAPKKAVAAKTAPAAK---KAVAKKESSDS----DDSESEEQKPAPKKAAVKPAA 199

Query: 1177 KQQSKEAKTTAESTQXXXXXXXXXXXXXXXXXXXTQKKEDNQVVPKRKRRKNAIKEDKDM 1356
            K+Q  E + + ES +                   T+K E  QV  +    +  IK+D+ +
Sbjct: 200  KKQESEDEDSDESEE---------------QKPATKKAEKMQVEEESSEEQKPIKQDQPI 244

Query: 1357 Q 1359
            Q
Sbjct: 245  Q 245



>sp|P35554|FTN_DROME FLIGHTIN (MUSCLE PROTEIN 27) >gi|422447|pir||A46436 myofibrillar
            protein flightin - fruit fly (Drosophila melanogaster)
            >gi|7968 (Z18858) flightin [Drosophila melanogaster]
            Length = 182
            
 Score = 33.6 bits (75), Expect = 3.6
 Identities = 21/48 (43%), Positives = 27/48 (55%), Gaps = 8/48 (16%)

Query: 1021 KRPSVTTTRPAPPSKAKDVAEDHRLNSITL-VKSSKTAATE-------PEPKKADD 1164
            K  S     PAPPSKA  VA DH+ +S+     +++ AA E       P P   DD
Sbjct: 18   KAASTQAGTPAPPSKAPSVASDHKADSVVAGTPANEEAAPEEVEEIKAPPPPPEDD 73



>pir||S32504 ryanodine receptor - rabbit
            Length = 875
            
 Score = 32.8 bits (73), Expect = 6.2
 Identities = 13/20 (65%), Positives = 17/20 (85%)

Query: 1138 EPEPKKADDENAEKQQSKEA 1197
            EPEP+KAD+EN EK++  EA
Sbjct: 333  EPEPEKADEENGEKEEVPEA 352



>gi|1099002 (U41510) coded for by C. elegans cDNA yk61e11.3; coded for by C.
            elegans cDNA yk69a7.5; coded for by C. elegans cDNA
            yk61e11.5 [Caenorhabditis elegans]
            Length = 550
            
 Score = 32.8 bits (73), Expect = 6.2
 Identities = 26/110 (23%), Positives = 46/110 (41%)

Query: 1024 RPSVTTTRPAPPSKAKDVAEDHRLNSITLVKSSKTAATEPEPKKADDENAEKQQSKEAKT 1203
            + S TTT     S  KD  + H+      V ++   +TE E  ++ + + E Q S+   T
Sbjct: 286  KSSKTTTTTTEASTKKDSKKSHKKTKEEKVTTTPEPSTE-ESSESPETSEEPQSSESTPT 344

Query: 1204 TAESTQXXXXXXXXXXXXXXXXXXXTQKKEDNQVVPKRKRRKNAIKEDKD 1353
            + EST+                    + K+D +    +K++K   +ED D
Sbjct: 345  SEESTEQSTEKPKK------------EDKKDKKDKKDKKQKKEDSEEDDD 382



>sp|P41891|GAR2_SCHPO GAR2 PROTEIN >gi|2130461|pir||S55785 nucleolar protein gar2 - fission
            yeast (Schizosaccharomyces pombe) >gi|663262 (Z48166)
            pid:g663262 [Schizosaccharomyces pombe]
            Length = 500
            
 Score = 32.8 bits (73), Expect = 6.2
 Identities = 21/93 (22%), Positives = 41/93 (43%), Gaps = 10/93 (10%)

Query: 1066 AKDVAEDHRLNSITLVKSSKTA--ATEPEPKKADDENAEKQQSKE--------AKTTAES 1215
            AK++A+      ++  KS K A  A+ PEP K   +  +K + KE          +++ES
Sbjct: 37   AKEIAKQSSKTDVSPKKSKKEAKRASSPEPSKKSVKKQKKSKKKEESSSESESESSSSES 96

Query: 1216 TQXXXXXXXXXXXXXXXXXXXTQKKEDNQVVPKRKRRKNAIKE 1344
                                 +  + + +V+ K + +K +  E
Sbjct: 97   ESSSSESESSSSESESSSSESSSSESEEEVIVKTEEKKESSSE 139



>gnl|PID|e342725 (Z99091) pre-ribopsomal particle assembly protein
            [Schizosaccharomyces pombe]
            Length = 500
            
 Score = 32.8 bits (73), Expect = 6.2
 Identities = 21/93 (22%), Positives = 41/93 (43%), Gaps = 10/93 (10%)

Query: 1066 AKDVAEDHRLNSITLVKSSKTA--ATEPEPKKADDENAEKQQSKE--------AKTTAES 1215
            AK++A+      ++  KS K A  A+ PEP K   +  +K + KE          +++ES
Sbjct: 37   AKEIAKQSSKTDVSPKKSKKEAKRASSPEPSKKSVKKQKKSKKKEESSSESESESSSSES 96

Query: 1216 TQXXXXXXXXXXXXXXXXXXXTQKKEDNQVVPKRKRRKNAIKE 1344
                                 +  + + +V+ K + +K +  E
Sbjct: 97   ESSSSESESSSSESESSSSESSSSESEEEVIVKTEEKKESSSE 139



>sp|P11716|RYNR_RABIT RYANODINE RECEPTOR, SKELETAL MUSCLE (SKELETAL MUSCLE CALCIUM RELEASE
            CHANNEL) >gi|482960|pir||B35041 ryanodine receptor,
            skeletal muscle - rabbit >gi|1710 (X15750) ryanodine
            receptor (AA 1-5037) [Oryctolagus cuniculus] >gi|1714
            (X15209) ryanodine receptor [Oryctolagus cuniculus]
            Length = 5037
            
 Score = 32.8 bits (73), Expect = 6.2
 Identities = 13/20 (65%), Positives = 17/20 (85%)

Query: 1138 EPEPKKADDENAEKQQSKEA 1197
            EPEP+KAD+EN EK++  EA
Sbjct: 4495 EPEPEKADEENGEKEEVPEA 4514



>prf||1509336A ryanodine receptor [Oryctolagus cuniculus]
            Length = 5037
            
 Score = 32.8 bits (73), Expect = 6.2
 Identities = 13/20 (65%), Positives = 17/20 (85%)

Query: 1138 EPEPKKADDENAEKQQSKEA 1197
            EPEP+KAD+EN EK++  EA
Sbjct: 4495 EPEPEKADEENGEKEEVPEA 4514


CPU time:    46.18 user secs.	    0.77 sys. secs	   46.95 total secs.

  Database: Non-redundant GenBank CDS
  translations+PDB+SwissProt+SPupdate+PIR
    Posted date:  May 6, 1998  6:00 AM
  Number of letters in database: 91,247,549
  Number of sequences in database:  302,480
  
Lambda     K      H
   0.318    0.135    0.401 

Gapped
Lambda     K      H
   0.270   0.0470    0.230 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 250051391
Number of Sequences: 302480
Number of extensions: 4494716
Number of successful extensions: 13088
Number of sequences better than 10: 26
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 10
Number of HSP's that attempted gapping in prelim test: 13051
Number of HSP's gapped (non-prelim): 28
length of query: 638
length of database: 91247549
effective HSP length: 56
effective length of query: 582
effective length of database: 74308669
effective search space: 43247645358
frameshift window, decay const: 50,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.8 bits)
X3: 64 (24.9 bits)
S1: 41 (21.7 bits)
S2: 71 (32.1 bits)
