| AcdFunResolve AcdVariableResolve
 AcdVarResolve
 AdvancedOptions
 AdvancedOptions$1
 AdvancedOptions$2
 Ajax
 AjaxUtil
 AlignApplet
 AlignFormat
 AlignJFrame
 Application
 ApplicationFields
 ApplicationNamePanel
 ApplicationParam
 AuthPopup
 AuthPopup$1
 AuthPopup$2
 AuthPopup$3
 AuthPopup$4
 AuthPopup$5
 AuthPopup$6
 BatchUpdateTimer
 Browser
 Browser$1
 BuildJembossForm
 BuildJembossForm$1
 BuildJembossForm$2
 BuildProgramMenu
 BuildProgramMenu$1
 BuildProgramMenu$2
 BuildProgramMenu$3
 BuildProgramMenu$4
 BuildProgramMenu$5
 BuildProgramMenu$6
 BuildProgramMenu$7
 BuildProgramMenu$8
 CallAjax
 ColorMenu
 ColourJFrame
 ColourMenu
 ColumnData
 Consensus
 CutNPasteTextArea
 Database
 Dependent
 DragJTable
 DragTree
 DragTree$1
 DragTree$2
 DragTree$3
 DragTree$4
 DragTree$5
 FileChooser
 FileChooser$1
 FileEditorDisplay
 FileList
 FileManager
 FileNode
 FileNode$1
 FileRoots
 FileSave
 FileSaving
 GetACD
 GetHelp
 GetWossname
 GraphicSequenceCollection
 InputSequenceAttributes
 InputSequenceAttributes$1
 Jemboss
 Jemboss$1
 Jemboss$2
 JembossAuthServer
 JembossAuthThread
 JembossFileAuthServer
 JembossFileServer
 JembossJarUtil
 JembossLogo
 JembossParams
 JembossProcess
 JembossRun
 JembossServer
 JembossSoapException
 JembossThread
 LabelTextBox
 LaunchJalView
 LaunchJalView$1
 LaunchJalView$2
 ListFile
 ListFile$1
 ListFilePanel
 LocalAndRemoteFileTreeFrame
 LocalAndRemoteFileTreeFrame$1
 LocalAndRemoteFileTreeFrame$2
 LocalAndRemoteFileTreeFrame$3
 LocalAndRemoteFileTreeFrame$4
 LocalAndRemoteFileTreeFrame$5
 MakeFileSafe
 Matrix
 MatrixJFrame
 MemoryComboBox
 MemoryComboBox$1
 MultiLineToolTipUI
 myComboPopup
 myComboPopup$1
 OutputSequenceAttributes
 OutputSequenceAttributes$1
 OutputSequenceAttributes$2
 OutputSequenceAttributes$3
 OutputSequenceAttributes$4
 OutputSequenceAttributes$5
 OutputSequenceAttributes$6
 ParseAcd
 PatternJFrame
 PendingResults
 PendingResults$1
 PendingResults$2
 PlafMacros
 PlotConsensus
 PrintAlignment
 PrintAlignmentImage
 PrivateRequest
 ProgList
 PublicRequest
 RemoteDragTree
 RemoteDragTree$1
 RemoteDragTree$2
 RemoteDragTree$3
 RemoteDragTree$4
 RemoteDragTree$5
 RemoteDragTree$6
 RemoteFileNode
 RemoteFileTreePanel
 RemoteFileTreePanel$1
 ReportFormat
 ResultList
 ResultsMenuBar
 ResultsMenuBar$1
 ResultsMenuBar$10
 ResultsMenuBar$11
 ResultsMenuBar$12
 ResultsMenuBar$13
 ResultsMenuBar$14
 ResultsMenuBar$15
 ResultsMenuBar$16
 ResultsMenuBar$17
 ResultsMenuBar$18
 ResultsMenuBar$19
 ResultsMenuBar$2
 ResultsMenuBar$20
 ResultsMenuBar$3
 ResultsMenuBar$4
 ResultsMenuBar$5
 ResultsMenuBar$6
 ResultsMenuBar$7
 ResultsMenuBar$8
 ResultsMenuBar$9
 ResultsUpdateTimer
 RunEmbossApplication
 RunEmbossApplication2
 ScrollPanel
 SectionPanel
 SectionPanel$1
 SectionPanel$2
 SectionPanel$3
 SectionPanel$4
 SectionPanel$5
 Separator
 Sequence
 SequenceData
 SequenceFilter
 SequenceJPanel
 SequenceList
 SequenceList$1
 SequenceList$2
 SequenceList$3
 SequenceList$4
 SequenceList$5
 SequenceList$6
 SequenceList$7
 SequenceListTableModel
 SequenceNameJButton
 SequenceProperties
 SequenceReader
 SequenceSaver
 ServerSetup
 ServerSetup$1
 ServerSetup$2
 ServerSetup$3
 SetInFileCard
 SetInFileCard$1
 SetInFileCard$2
 SetInFileCard$3
 SetInFileCard$4
 SetInFileCard$5
 SetInFileCard$6
 SetInFileCard$7
 SetInFileCard$8
 SetOutFileCard
 SetOutFileCard$1
 SetUpMenuBar
 SetUpMenuBar$1
 SetUpMenuBar$10
 SetUpMenuBar$11
 SetUpMenuBar$2
 SetUpMenuBar$3
 SetUpMenuBar$4
 SetUpMenuBar$5
 SetUpMenuBar$6
 SetUpMenuBar$7
 SetUpMenuBar$8
 SetUpMenuBar$9
 ShowDB
 ShowResultSet
 ShowSavedResults
 ShowSavedResults$1
 ShowSavedResults$10
 ShowSavedResults$11
 ShowSavedResults$12
 ShowSavedResults$13
 ShowSavedResults$14
 ShowSavedResults$15
 ShowSavedResults$2
 ShowSavedResults$3
 ShowSavedResults$4
 ShowSavedResults$5
 ShowSavedResults$6
 ShowSavedResults$7
 ShowSavedResults$8
 ShowSavedResults$9
 SplashThread
 SwingWorker
 SwingWorker.ThreadVar
 SwingWorker$1
 SwingWorker$2
 TabListCellRenderer
 TestPrivateServer
 TestPublicServer
 TextAreaSink
 TextAreaSink$1
 TextFieldFloat
 TextFieldInt
 TextFieldSink
 
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