|   | PROTEIN MOTIFS | 
Protein motif searches
| Program name | Description | 
|---|---|
| antigenic | Finds antigenic sites in proteins | 
| digest | Reports on protein proteolytic enzyme or reagent cleavage sites | 
| epestfind | Finds PEST motifs as potential proteolytic cleavage sites | 
| fuzzpro | Search for patterns in protein sequences | 
| fuzztran | Search for patterns in protein sequences (translated) | 
| helixturnhelix | Identify nucleic acid-binding motifs in protein sequences | 
| oddcomp | Identify proteins with specified sequence word composition | 
| patmatdb | Searches protein sequences with a sequence motif | 
| patmatmotifs | Scan a protein sequence with motifs from the PROSITE database | 
| pepcoil | Predicts coiled coil regions in protein sequences | 
| preg | Regular expression search of protein sequence(s) | 
| pscan | Scans protein sequence(s) with fingerprints from the PRINTS database | 
| sigcleave | Reports on signal cleavage sites in a protein sequence | 
| omeme | Motif detection | 
| emast | Motif detection | 
| ememe | Motif detection |