package Bio::Chado::Schema::Result::Sequence::FeatureCvterm;
BEGIN {
  $Bio::Chado::Schema::Result::Sequence::FeatureCvterm::AUTHORITY = 'cpan:RBUELS';
}
BEGIN {
  $Bio::Chado::Schema::Result::Sequence::FeatureCvterm::VERSION = '0.08000'; # TRIAL
}

# Created by DBIx::Class::Schema::Loader
# DO NOT MODIFY THE FIRST PART OF THIS FILE

use strict;
use warnings;

use base 'DBIx::Class::Core';



__PACKAGE__->table("feature_cvterm");


__PACKAGE__->add_columns(
  "feature_cvterm_id",
  {
    data_type         => "integer",
    is_auto_increment => 1,
    is_nullable       => 0,
    sequence          => "feature_cvterm_feature_cvterm_id_seq",
  },
  "feature_id",
  { data_type => "integer", is_foreign_key => 1, is_nullable => 0 },
  "cvterm_id",
  { data_type => "integer", is_foreign_key => 1, is_nullable => 0 },
  "pub_id",
  { data_type => "integer", is_foreign_key => 1, is_nullable => 0 },
  "is_not",
  { data_type => "boolean", default_value => \"false", is_nullable => 0 },
  "rank",
  { data_type => "integer", default_value => 0, is_nullable => 0 },
);
__PACKAGE__->set_primary_key("feature_cvterm_id");
__PACKAGE__->add_unique_constraint(
  "feature_cvterm_c1",
  ["feature_id", "cvterm_id", "pub_id", "rank"],
);


__PACKAGE__->belongs_to(
  "feature",
  "Bio::Chado::Schema::Result::Sequence::Feature",
  { feature_id => "feature_id" },
  {
    cascade_copy   => 0,
    cascade_delete => 0,
    is_deferrable  => 1,
    on_delete      => "CASCADE",
    on_update      => "CASCADE",
  },
);


__PACKAGE__->belongs_to(
  "pub",
  "Bio::Chado::Schema::Result::Pub::Pub",
  { pub_id => "pub_id" },
  {
    cascade_copy   => 0,
    cascade_delete => 0,
    is_deferrable  => 1,
    on_delete      => "CASCADE",
    on_update      => "CASCADE",
  },
);


__PACKAGE__->belongs_to(
  "cvterm",
  "Bio::Chado::Schema::Result::Cv::Cvterm",
  { cvterm_id => "cvterm_id" },
  {
    cascade_copy   => 0,
    cascade_delete => 0,
    is_deferrable  => 1,
    on_delete      => "CASCADE",
    on_update      => "CASCADE",
  },
);


__PACKAGE__->has_many(
  "feature_cvterm_dbxrefs",
  "Bio::Chado::Schema::Result::Sequence::FeatureCvtermDbxref",
  { "foreign.feature_cvterm_id" => "self.feature_cvterm_id" },
  { cascade_copy => 0, cascade_delete => 0 },
);


__PACKAGE__->has_many(
  "feature_cvtermprops",
  "Bio::Chado::Schema::Result::Sequence::FeatureCvtermprop",
  { "foreign.feature_cvterm_id" => "self.feature_cvterm_id" },
  { cascade_copy => 0, cascade_delete => 0 },
);


__PACKAGE__->has_many(
  "feature_cvterm_pubs",
  "Bio::Chado::Schema::Result::Sequence::FeatureCvtermPub",
  { "foreign.feature_cvterm_id" => "self.feature_cvterm_id" },
  { cascade_copy => 0, cascade_delete => 0 },
);


# Created by DBIx::Class::Schema::Loader v0.06001 @ 2010-04-16 14:33:36
# DO NOT MODIFY THIS OR ANYTHING ABOVE! md5sum:jysoH2wjUgaPP8iBY7IHcw


# You can replace this text with custom content, and it will be preserved on regeneration
1;

__END__
=pod

=encoding utf-8

=head1 NAME

Bio::Chado::Schema::Result::Sequence::FeatureCvterm

=head1 DESCRIPTION

Associate a term from a cv with a feature, for example, GO annotation.

=head1 NAME

Bio::Chado::Schema::Result::Sequence::FeatureCvterm

=head1 ACCESSORS

=head2 feature_cvterm_id

  data_type: 'integer'
  is_auto_increment: 1
  is_nullable: 0
  sequence: 'feature_cvterm_feature_cvterm_id_seq'

=head2 feature_id

  data_type: 'integer'
  is_foreign_key: 1
  is_nullable: 0

=head2 cvterm_id

  data_type: 'integer'
  is_foreign_key: 1
  is_nullable: 0

=head2 pub_id

  data_type: 'integer'
  is_foreign_key: 1
  is_nullable: 0

Provenance for the annotation. Each annotation should have a single primary publication (which may be of the appropriate type for computational analyses) where more details can be found. Additional provenance dbxrefs can be attached using feature_cvterm_dbxref.

=head2 is_not

  data_type: 'boolean'
  default_value: false
  is_nullable: 0

If this is set to true, then this annotation is interpreted as a NEGATIVE annotation - i.e. the feature does NOT have the specified function, process, component, part, etc. See GO docs for more details.

=head2 rank

  data_type: 'integer'
  default_value: 0
  is_nullable: 0

=head1 RELATIONS

=head2 feature

Type: belongs_to

Related object: L<Bio::Chado::Schema::Result::Sequence::Feature>

=head2 pub

Type: belongs_to

Related object: L<Bio::Chado::Schema::Result::Pub::Pub>

=head2 cvterm

Type: belongs_to

Related object: L<Bio::Chado::Schema::Result::Cv::Cvterm>

=head2 feature_cvterm_dbxrefs

Type: has_many

Related object: L<Bio::Chado::Schema::Result::Sequence::FeatureCvtermDbxref>

=head2 feature_cvtermprops

Type: has_many

Related object: L<Bio::Chado::Schema::Result::Sequence::FeatureCvtermprop>

=head2 feature_cvterm_pubs

Type: has_many

Related object: L<Bio::Chado::Schema::Result::Sequence::FeatureCvtermPub>

=head1 AUTHOR

Robert Buels <rbuels@cpan.org>

=head1 COPYRIGHT AND LICENSE

This software is copyright (c) 2011 by Robert Buels.

This is free software; you can redistribute it and/or modify it under
the same terms as the Perl 5 programming language system itself.

=cut

