#NEXUS
begin taxa;
	dimensions ntax=27;
	taxlabels
	Schistosoma_mansoni_AAA29919.1	Pan_troglodytes_AAA35438.1	Gallus_gallus_AAA49095.1	Culex_tarsalis_AAA73976.1	Coprinus_cinereus_AAA79845.1	Caenorhabditis_elegans_AAA79846.1	Homo_sapiens_AAB51316.1	Trypanosoma_cruzi_AAB58349.1	Mus_musculus_AAC36016.1	Drosophila_melanogaster_AAC39042.1	Drosophila_melanogaster_AAC39047.1	Drosophila_simulans_AAC39066.1	Drosophila_simulans_AAC39072.1	Drosophila_yakuba_AAC39075.1	Arabidopsis_thaliana_AAD29799.1	Candida_albicans_AAF28895.1	Drosophila_melanogaster_AAF57011.1	Zea_mays_BAA00009.1	Emericella_nidulans_BAA00908.1	Caenorhabditis_elegans_CAA19447.1	Escherichia_coli_CAA25253.1	Trypanosoma_brucei_CAA27559.1	Drosophila_melanogaster_CAA40804.1	Leishmania_mexicana_CAA52804.1	Saccharomyces_cerevisiae_CAA89080.1	Kluyveromyces_lactis_CAB53017.1	Schizosaccharomyces_pombe_CAB76230.1;
end;

begin characters;
	dimensions nchar=322;
	format datatype=protein missing=? gap=-;
	matrix
Schistosoma_mansoni_AAA29919.1	???????????????????????????????????????????????????????????MSGSRKFFVGGNWKMN-GSRDDNDKLLKLLSEAHFDDN--TEVLIAPPSVFLHEIRKSLK-KEIHVAAQNCYKVSKGAFTGEISPAMIRDIGCDWVILGHSERRNIFGESDELIAEKVQHALAEGLSVIACIGETLSERESNKTEEVCVRQLKAIANKIKSADEWKRVVVAYEPVWAIGTGKVATPQQAQEVHNFLRKWFKTNAPNGVDEKIRIIYGGSVTAANCKELAQQHDVDGFLVGGASLK-PEFTEICKARQR?????
Pan_troglodytes_AAA35438.1	???????????????????????????????????????????????????????????MAPSRKFFVGGNWKMN-GRKQSLGELIGTLNAAKVPAD--TEVVCAPPTAYIDFARQKLD-PKIAVAAQNCYKVTNGAFTGEISPGMIKDCGATWVVLGHSERRHVFGESDELIGQKVAHALAEGLGVIACIGEKLDEREAGITEKVVFEQTKVIADNVK---DWSKVVLAYEPVWAIGTGKTATPQQAQEVHEKLRGWLKSNVSDAVAQSTRIIYGGSVTGATCKELASQPDVDGFLVGGASLK-PEFVDIINAKQ??????
Gallus_gallus_AAA49095.1	???????????????????????????????????????????????????????????MAP-RKFFVGGNWKMN-GDKKSLGELIHTLNGAKLSAD--TEVVCGAPSIYLDFARQKLD-AKIGVAAQNCYKVPKGAFTGEISPAMIKDIGAAWVILGHSERRHVFGESDELIGQKVAHALAEGLGVIACIGEKLDEREAGITEKVVFEQTKAIADNVK---DWSKVVLAYEPVWAIGTGKTATPQQAQEVHEKLRGWLKSHVSDAVAQSTRIIYGGSVTGGNCKELASQHDVDGFLVGGASLK-PEFVDIINAKH??????
Culex_tarsalis_AAA73976.1	???????????????????????????????????????????????????????????MG--RKFCVGGNWKMN-GDKASIADLCKVLTTGPLNAD--TEVVVGCPAPYLTLARSQLP-DSVCVAAQNCYKVPKGAFTGEISPAMLKDLNIGWVILGHSERRAIFGESDELIADKVAHALAEGLKVIACIGETLQEREAGQTEAVCFRQTKAIADKVK---DWSNVVIAYEPVWAIGTGKTASPEQAQEVHAALRKWFTENVSADVSAAIRIQYGGSVTAANCRELAAKPDIDGFLVGGASLK-PEFIQIVNARQ??????
Coprinus_cinereus_AAA79845.1	???????????????????????????????????????????????????????????MT--RSFFVGGNWKLNPTSLSAAKAPVEALNKADLDP--STEVVVAPPALYLLPIQEIAG-KAVKVAAQNAYFKESGAFTGEISPKQISDAGIPYVILGHSERRTLFHETSEVVALKTRAALDNGLKVILCIGETLKEREEGRTAAVCEEQLSAVVKQLKEE-DWSNIVIAYEPVWAIGTGKVATTSQAQETHVDVRKYLATAVSPKVASETRVIYGGSVNAANSKDLASQQDIDGFLVGGASLK-PEFVDIINARKA?????
Caenorhabditis_elegans_AAA79846.1	???????????????????????????????????????????????????????????MT--RKFFVGGNWKMN-GDYASVDGIVTFLNASADNSS--VDVVVAPPAPYLAYAKSKLK-AGVLVAAQNCYKVPKGAFTGEISPAMIKDLGLEWVILGHSERRHVFGESDALIAEKTVHALEAGIKVVFCIGEKLEEREAGHTKDVNFRQLQAIVDKGV---SWENIVIAYEPVWAIGTGKTASGEQAQEVHEWIRAFLKEKVSPAVADATRIIYGGSVTADNAADVGKKPDIDGFLVGGASLK-PDFVKIINARS??????
Homo_sapiens_AAB51316.1	???????????????????????????????????????????????????????????MAPSRKFFVGGNWKMN-GRKQSLGELIGTLNAAKVPAD--TEVVCAPPTAYIDFARQKLD-PKIAVAAQNCYKVTNGAFTGEISPGMIKDCGATWVVLGHSERRHVFGESDELIGQKVAHALAEGLGVIACIGEKLDEREAGITEKVVFEQTKVIADNVK---DWSKVVLAYEPVWAIGTGKTATPQQAQEVHEKLRGWLKSNVSDAVAQSTRIIYGGSVTGATCKELASQPDVDGFLVGGASLK-PEFVDIINAKQ??????
Trypanosoma_cruzi_AAB58349.1	???????????????????????????????????????????????????????????MASKPQPIAAANWKCN-GSESLLVPLIETLNAATFDHD--VQCVVAPTFLHIPMTKARLTNPKFQIAAQNA-ITRSGAFTGEVSLQILKDYGISWVVLGHSERRLYYGETNEIVAEKVAQACAAGFHVIVCVGETNEEREAGRTAAVVLTQLAAVAQKLS-KEAWSRVVIAYEPVWAIGTGKVATPQQAQEVHELLRRWVRSKLGTDIAAQLRILYGGSVTAKNARTLYQMRDINGFLVGGASLKP-EFVEIIEATK??????
Mus_musculus_AAC36016.1	???????????????????????????????????????????????????????????MAPTRKFFVGGNWKMN-GRKKCLGELICTLNAANVPAG--TEVVCAPPTAYIDFARQKLD-PKIAVAAQNCYKVTNGAFTGEISPGMIKDLGATWVVLGHSERRHVFGESDELIGQKVSHALAEGLGVIACIGEKLDEREAGITEKVVFEQTKVIADNVK---DWSKVVLAYEPVWAIGTGKTATPQQAQEVHEKLRGWLKSNVNDGVAQSTRIIYGGSVTGATCKELASQPDVDGFLVGGASLK-PEFVDIINAKQ??????
Drosophila_melanogaster_AAC39042.1	???????????????????????????????????????????????????????????MS--RKFCVGGNWKMN-GDQKSIAEIAKTLSSAALDPN--TEVVIGCPAIYLMYARNLLP-CELGLAGQNAYKVAKGAFTGEISPAMLKDIGADWVILGHSERRAIFGESDALIAEKAEHALAEGLKVIACIGETLEEREAGKTNEVVARQMCAYAQKIK---DWKNVVVAYEPVWAIGTGKTATPDQAQEVHAFLRQWLSDNISKEVSASLRIQYGGSVTAANAKELAKKPDIDGFLVGGASLK-PEFVDIINARQ??????
Drosophila_melanogaster_AAC39047.1	???????????????????????????????????????????????????????????MS--RKFCVGGNWKMN-GDQKSIAEIAKTLSSAALDPN--TEVVIGCPAIYLMYARNLLP-CELGLAGQNAYKVAKGAFTGEISPAMLKDIGADWVILGHSERRAIFGESDALIAEKAEHALAEGLKVIACIGETLEEREAGKTNEVVARQMCAYAQKIK---DWKNVVVAYEPVWAIGTGKTATPDQAQEVHAFLRQWLSDNISKEVSASLRIQYGGSVTAANAKELAKKPDIDGFLFGGASLK-PEFVDIINARQ??????
Drosophila_simulans_AAC39066.1	???????????????????????????????????????????????????????????MS--RKFCVGGNWKMN-GDQKSIAEIAKTLSSAALDPN--TEVVIGCPAIYLMYARNLLP-CELGLAGQNAYKVAKGAFTGEISPAMLKDIGADWVILGHSERRAIFGESDALIAEKAEHALAEGLKVIACIGETLEEREAGKTNEVVARQMCAYAQKIK---DWKNVVVAYEPVWAIGTGKTATPDQAQEVHAFLRQWLSDNISKEVSASLRIQYGGSVTAANAKELAKKPDIDGFLVGGASLK-PEFVDIINARQ??????
Drosophila_simulans_AAC39072.1	???????????????????????????????????????????????????????????MS--RKFCVGGNWKMN-GDQKSIAEIAKTLSSAALDPN--TEVVIGCPAIYLMYARNLLP-CELGLAGQNAYKVAKGAFTGEISPAMLKDIGADWVILGHSERRAIFGESDALIAEKAEHALAEGLKVIACIGETLEEREAGKTNEVMARQMCAYAQKIK---DWKNVVVAYEPVWAIGTGKTATPDQAQEVHAFLRQWLSDNISKEVSASLRIQYGGSVTAANAKELAKKPDIDGFLVGGASLK-PEFVDIINARQ??????
Drosophila_yakuba_AAC39075.1	???????????????????????????????????????????????????????????MS--RKFCVGGNWKMN-GDQKSIAEIAKTLSSAALDPN--TEVVIGCPAIYLMYARNLLP-CELGLAGQNAYKVAKGAFTGEISPAMLKDIGADWVILGHSERRAIFGESDALIAEKAEHALAEGLKVIACIGETLEEREAGKTNEVVARQMCAYAQKIK---DWKNVVVAYEPVWAIGTGKTATPDQAQEVHAFLRQWLSDNISKEVSASLRIQYGGSVTAANAKELAKKPDIDGFLVGGASLK-PEFVDIINARQ??????
Arabidopsis_thaliana_AAD29799.1	MAATSLTAPPSFSGLRRISPKLDAAAVSSHQSFFHRVNSSTRLVSSSSSSHRSPRGVVAMAGSGKFFVGGNWKCN-GTKDSIAKLISDLNSATLEAD--VDVVVSPPFVYIDQVKSSLT-DRIDISGQNSWVGKGGAFTGEISVEQLKDLGCKWVILGHSERRHVIGEKDEFIGKKAAYALSEGLGVIACIGEKLEEREAGKTFDVCFAQLKAFADAVP---SWDNIVVAYEPVWAIGTGKVASPQQAQEVHVAVRGWLKKNVSEEVASKTRIIYGGSVNGGNSAELAKEEDIDGFLVGGASLKGPEFATIVNSVTSKKVAA
Candida_albicans_AAF28895.1	???????????????????????????????????????????????????????????MA--RQFFVGGNFKAN-GTKQQITSIIDNLNKADLPKD--VEVVICPPALYLGLAVEQNKQPTVAIGAQNVFDKSCGAFTGETCASQILDVGASWTLTGHSERRTIIKESDEFIAEKTKFALDTGVKVILCIGETLEERKGGVTLDVCARQLDAVSKIVS---DWSNIVVAYEPVWAIGTGLAATPEDAEETHKGIRAHLAKSIGAEQAEKTRILYGGSVNGKNAKDFKDKANVDGFLVGGASLK-PEFVDIIKSRL??????
Drosophila_melanogaster_AAF57011.1	???????????????????????????????????????????????????????????MS--RKFCVGGNWKMN-GDQKSIAEIAKTLSSAALDPN--TEVVIGCPAIYLMYARNLLP-CELGLAGQNAYKVAKGAFTGEISPAMLKDIGADWVILGHSERRAIFGESDALIAEKAEHALAEGLKVIACIGETLEEREAGKTNEVVARQMCAYAQKIK---DWKNVVVAYEPVWAIGTGQTATPDQAQEVHAFLRQWLSDNISKEVSASLRIQYGGSVTAANAKELAKKPDIDGFLVGGASLK-PEFVDIINARQ??????
Zea_mays_BAA00009.1	???????????????????????????????????????????????????????????MG--RKFFVGGNWKCN-GTTDQVEKIVKTLNEGQVPPSDVVEVVVSPPYVFLPVVKSQLR-QEFHVAAQNCWVKKGGAFTGEVSAEMLVNLGVPWVILGHSERRALLGESNEFVGDKVAYALSQGLKVIACVGETLEQREAGSTMDVVAAQTKAIAEKIK---DWSNVVVAYEPVWAIGTGKVATPAQAQEVHASLRDWLKTNASPEVAESTRIIYGGSVTAANCKELAAQPDVDGFLVGGASLK-PEFIDIINAATVKSA??
Emericella_nidulans_BAA00908.1	???????????????????????????????????????????????????????????MP--RKFFVGGNFKMN-GNAESTTSIIKNLNSANLDK--SVEVVVSPPALYLLQAREVAN-KEIGVAAQNVFDKPNGAFTGEISVQQLREANIDWTILGHSERRVILKETDEFIARKTKAAIEGGLQVIFCIGETLEEREANKTIDVVTRQLNAAAKELSKE-QWAKVVIAYEPVWAIGTGKVATTEQAQEVHSAIRKWLKDAISAEAAENTRIIYGGSVSEKNCKDLAKEADIDGFLVGGASLK-PAFVDIVNARL??????
Caenorhabditis_elegans_CAA19447.1	???????????????????????????????????????????????????????????MT--RKFFVGGNWKMN-GDYASVDGIVTFLNASADNSS--VDVVVAPPAPYLAYAKSKLK-AGVLVAAQNCYKVPKGAFTGEISPAMIKDLGLEWVILGHSERRHVFGESDALIAEKTVHALEAGIKVVFCIGEKLEEREAGHTKDVNFRQLQAIVDKGV---SWENIVIAYEPVWAIGTGKTASGEQAQEVHEWIRAFLKEKVSPAVADATRIIYGGSVTADNAAELGKKPDIDGFLVGGASLK-PDFVKIINARS??????
Escherichia_coli_CAA25253.1	??????????????????????????????????????????????????????????????MRHPLVMGNWKLN-GSRHMVHELVSNLRKELAGVAG-CAVAIAPPEMYIDMAKREAEGSHIMLGAQNVNLNLSGAFTGETSAAMLKDIGAQYIIIGHSERRTYHKESDELIAKKFAVLKEQGLTPVLCIGETEAENEAGKTEEVCARQIDAVLKTQG-AAAFEGAVIAYEPVWAIGTGKSATPAQAQAVHKFIRDHI-AKVDANIAEQVIIQYGGSVNASNAAELFAQPDIDGALVGGASLKADAFAVIVKAAEAAKQA?
Trypanosoma_brucei_CAA27559.1	????????????????????????????????????????????????????????????MSKPQPIAAANWKCN-GSQQSLSELIDLFNSTSINHD--VQCVVASTFVHLAMTKERLSHPKFVIAAQNA-IAKSGAFTGEVSLPILKDFGVNWIVLGHSERRAYYGETNEIVADKVAAAVASGFMVIACIGETLQERESGRTAVVVLTQIAAIAKKLK-KADWAKVVIAYEPVWAIGTGKVATPQQAQEAHALIRSWVSSKIGADVAGELRILYGGSVNGKNARTLYQQRDVNGFLVGGASLKP-EFVDIIKATQ??????
Drosophila_melanogaster_CAA40804.1	???????????????????????????????????????????????????????????MS--RKFCVGGNWKMN-GDQKSIAEIAKTLSSAALDPN--TEVVIGCPAIYLMYARNLLP-CELGLAGQNAYKVAKGAFTGEISPAMLKDIGADWVILGHSERRAIFGESDALIAEKAEHALAEGLKVIACIGETLEEREAGKTNEVVARQMCAYAQKIK---DWKNVVVAYEPVWAIGTGKTATPDQAQEVHASLRQWLSDNISKEVSASLRIQYGGSVTAANAKELAKKPDIDGFLVGGASLK-PEFLDIINARQ??????
Leishmania_mexicana_CAA52804.1	???????????????????????????????????????????????????????????MSAKPQPIAAANWKCN-GTTASIEKLVQVFNEHTISHD--VQCVVAPTFVHIPLVQAKLRNPKYVISAENA-IAKSGAFTGEVSMPILKDIGVHWVILGHSERRTYYGETDEIVAQKVSEACKQGFMVIACIGETLQQREANQTAKVVLSQTSAIAAKLT-KDAWNQVVLAYEPVWAIGTGKVATPEQAQEVHLLLRKWVSENIGTDVAAKLRILYGGSVNAANAATLYAKPDINGFLVGGASLKP-EFRDIIDATR??????
Saccharomyces_cerevisiae_CAA89080.1	???????????????????????????????????????????????????????????MA--RTFFVGGNFKLN-GSKQSIKEIVERLNTASIPEN--VEVVICPPATYLDYSVSLVKKPQVTVGAQNAYLKASGAFTGENSVDQIKDVGAKWVILGHSERRSYFHEDDKFIADKTKFALGQGVGVILCIGETLEEKKAGKTLDVVERQLNAVLEEVK---DWTNVVVAYEPVWAIGTGLAATPEDAQDIHASIRKFLASKLGDKAASELRILYGGSANGSNAVTFKDKADVDGFLVGGASLK-PEFVDIINSRN??????
Kluyveromyces_lactis_CAB53017.1	????????????????????????????????????????????????????????????????????????????????????????MHTPRLP------V--------L----TLVKTP------LN---KSR--MSVLN--------GLSWVTLKEELTSTKLMKSS---PKKPNLLWTAVSRLSLCIGETLEEKQQNITLQVVQRQLQAVLEKVQ---DWTNVVVAYEPVWAIGTGLAATAEDAQDIHHSIREFLAEKLSRDVADSVRILYGGSANGKNAVTFKDKADVDGFLVGGASLK-PEFVDIINSRV??????
Schizosaccharomyces_pombe_CAB76230.1	???????????????????????????????????????????????????????????MA--RKFFVGGNFKMN-GSLESMKTIIEGLNTTKLNVG-DVETVIFPQNMYLITTRQQVK-KDIGVGAQNVFDKKNGAYTGENSAQSLIDAGITYTLTGHSERRTIFKESDEFVADKTKFALEQGLTVVACIGETLAEREANETINVVVRQLNAIADKVQN---WSKIVIAYEPVWAIGTGKTATPEQAQEVHAEIRKWATNKLGASVAEGLRVIYGGSVNGGNCKEFLKFHDIDGFLVGGASLK-PEFHNIVNVHSL?????
;
end;

begin assumptions;
	wtset MySoapWeights (VECTOR) = 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0.971 0.971 0.971 0.971 1 1 1 1 1 1 1 1 1 1 1 1 0.714 0.714 0.714 0.714 0.714 0.714 0.714 0.714 0.714 1 1 1 1 1 1 1 1 1 1 1 1 0.143 0.143 0.143 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0.714 0.714 0.714 0.857 0.857 1 1 1 1 1 1 1 1 1 1 1 0.714 0.714 0.714 0.714 0.714 0.714 0.714 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0.629 0.629 0.629 0.629 0.629 0.629 0.629 0.629 0.629 0.629 0.629 0.629 0.629 0.629 0.629 0.629 0.629 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0.486 0.486 0.143 0.143 0.143 0.486 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 1 0.714 0.714 1 1 1 1 1 1 1 1 1 0.571 0.571 1 1 1 1 1;
end;

begin trees;
	tree triose_phosphate_isomerase = ((Leishmania_mexicana_CAA52804.1:0.16776,(Trypanosoma_brucei_CAA27559.1:0.22886,Trypanosoma_cruzi_AAB58349.1:0.24654)inode_3:0.12662[1])inode_2:0.23383[1],Escherichia_coli_CAA25253.1:0.71868,(((Culex_tarsalis_AAA73976.1:0.20499,(Drosophila_yakuba_AAC39075.1:0.02246,((Drosophila_melanogaster_AAC39047.1:0.00646,(Drosophila_melanogaster_AAC39042.1:0.00628,(Drosophila_melanogaster_CAA40804.1:0.00567,Drosophila_melanogaster_AAF57011.1:0.00228)inode_12:0.00121[0.467])inode_11:0.00185[0.463])inode_10:0.00414[0.95],(Drosophila_simulans_AAC39066.1:0.00341,Drosophila_simulans_AAC39072.1:0.00921)inode_13:0.00663[0.753])inode_9:0.00521[0.47])inode_8:0.19829[1])inode_7:0.07204[0.997],((Schistosoma_mansoni_AAA29919.1:0.38847,((Zea_mays_BAA00009.1:0.29224,Arabidopsis_thaliana_AAD29799.1:0.40338)inode_25:0.1064[0.997],((Schizosaccharomyces_pombe_CAB76230.1:0.30207,((Saccharomyces_cerevisiae_CAA89080.1:0.11713,Kluyveromyces_lactis_CAB53017.1:0.4254)inode_23:0.12221[1],Candida_albicans_AAF28895.1:0.24334)inode_22:0.21654[1])inode_21:0.10229[1],(Coprinus_cinereus_AAA79845.1:0.45794,Emericella_nidulans_BAA00908.1:0.25089)inode_24:0.07937[0.59])inode_20:0.1461[1])inode_19:0.07697[0.577])inode_18:0.04556[0.35],(((Homo_sapiens_AAB51316.1:0.00512,Pan_troglodytes_AAA35438.1:0.00287)inode_17:0.03705[1],Mus_musculus_AAC36016.1:0.09108)inode_16:0.144[1],Gallus_gallus_AAA49095.1:0.10698)inode_15:0.18557[1])inode_14:0.07273[0.997])inode_6:0.03212[0.48],(Caenorhabditis_elegans_AAA79846.1:0.00493,Caenorhabditis_elegans_CAA19447.1:0.00163)inode_5:0.37486[1])inode_4:0.13885[1])inode_1;
end;

