#NEXUS 


BEGIN DATA;
DIMENSIONS  NTAX=32 NCHAR=2147;

[!These ribosomal sequences are those used in:

Lake, J.A.  1988.  Origin of the eukaryotic nucleus determined by rate-invariant analysis of rRNA sequences.  Nature, 331:184-186.

Thanks to James Lake for supplying these data, March 1990. 

The two trees in the file are the most parsimonious trees found.

]
FORMAT DATATYPE=DNA  MISSING=? GAP=-  INTERLEAVE ;OPTIONS  MSTAXA=UNCERTAIN  IGNORE=UNINFORM ;

MATRIX

[                                    10        20        30        40        50        60        70        80        90        100]
[                                    .         .         .         .         .         .         .         .         .         .]

Homo_sapiens                --------TAC-----CTGGTTGATCCTGCC---AGTAG-CATATGCTTGTCTCAAAGATACCCACTCCC-----GACC-CGGGGAGGTAGTGACGAAAA   [77]
Rattus_norvegicus           --------TAC-----CTGGTTGATCCTGCC---AGTAG-CATATGCTTGTCTCAAAGATACCCACTCCC-----GACC-CGGGGAGGTAGTGACGAAAA   [77]
Xenopus_laevis              --------TAC-----CTGGTTGATCCTGCC---AGTAG-CATATGCTTGTCTCAAAGATACCCACTCCC-----GACG-CGGGGAGGTAGTGACGAAAA   [77]
A._salina                   --------TAC-----CTGGTTGATCCTGCC---AGTAG-CATATGCTTGTCTCAAAGATACCCACTCCC-----AGCA-CGGGGAGGTAGTGACGAAAA   [77]
S._cerevisiae               --------TAT-----CTGGTTGATCCTGCC---AGTAGTCATATGCTTGTCTCAAAGATACCCAATCCT-----AATT-CAGGGAGGTAGTGACAATAA   [78]
P.MICA                      ---------AT-----CTGGTTGATCCTGCC---AGTAGTCATATGCTTGTCTCAAAGATACCCAATCCT-----GACA-CAGGGAGGTAGTGACAAGAA   [77]
D.DISC                      --------TAA-----CTGGTTGATCCTGCC---AGTAGTCATATGCTTGTCTCAAAGATACTCAATCCC-----AATA-CGGGGAAGTAGTGACAATAA   [78]
T.BRUC                      --------GAT-----CTGGTTGATTCTGCC---AGTAGTCATATGCTTGTTTCAAGGATGCCCAATGTCGAAAAAATA-CGATGAGGCAGCGAAAAGAA   [83]
E.GRAC                      --------AAT-----CTGGTTGATCCTGCC---AGCAGTCATATGCTTTGTTCAAGGGTGCCCCATGCA-AAGACACT-CTGTGAGGCAGCGACGAACA   [82]
Zea_mays                    --------TAC-----CTGGTTGATCCTGCC---AGTAGTCATATGCTTGTCTCAAAGATACCCAATCCT-----GACA-CGGGGAGGTAGTGACAATAA   [78]
D._mobilis                  ------TAACT-----CCGGTTGATCCTGCC---GGTCCCGACCGCTATCGGGGTGGGGTCCGCAATGCG-----GGAAACCGTGACGGGGCCACCCCGA   [81]
S._solfataricus             --------ATT-----CCGGTTGATCCTGCC---GGACCCGACCGCTATCGGGGTAGGGTCCCCAATGCG-----CGAAAGCGTGAGGGCGCTACCCCGA   [79]
T._tenax                    --------AAA-----CCGGTTGATCCTGCC---GGACCTGACCGCTATCGGGGTGGGGTCCGCAATGCG-----GGCAACCGCGACGGGGCCACCCCGA   [79]
M._vannielii                --------ATT-----CCGGTTGATCCCGCC---GGAGGCTACTGCTATTGGGGTTCGATCCGCAATGCA-----CGAAAGTGCGACGGGGGGACCCCAA   [79]
MB._formicicum              --------AGT-----CCGTTTGATCCTGGC---GGAGGCCACTGCTATTGGGTTTCGATCCGCAATGCA-----CGAAAGTGCGACGGGGGAAACCCAA   [79]
MS._hungatei                --------ATT-----CTGGTTGATCCTGCC---AGAGGCCACTGCTATCGGGGTTTGATTTACCATGCG-----GGCAACCGTGATAAGGAAACCCCGA   [79]
H._volacanii                --------ATT-----CCGGTTGATCCTGCC---GGAGGTCATTGCTATTGGGGTCCGATTTACACTGCA-----CGCAAGTGCGATAAGGGGACCCCAA   [79]
HC._morrhuae                --------ATT-----CCGGTTGATCCTGCC---GGAGGCTATTGCTATCGGGGTCCGATTTACACTGCA-----CGCCAGTGCGATAAGGGGACCCCGA   [79]
H.HALO                      --------ATT-----CCGGTTGATCCTGCC---GGAGGCCATTGCTATCGGAGTCCGATTTACACTGTA-----CGAAAGTGCGATAAGGGGACTCCGA   [79]
H._cutirubrum               --------ATT-----CCGGTTGATCCTGCC---GGAGGCCATTGCTATCGGAGTCCGATTTACACTGTA-----CGAAAGTGCGATAAGGGGACTCCGA   [79]
AN._nidulans                --CAAAATGGA-----GAGTTTGATCCTGGCTCAGGAT--GAACGCTGGCGGCGTGC--TCCGCAATGGG-----CGCAAGCCTGACGGAGCAACGCCGC   [84]
HE.CHL                      ----------------------GATCCTGGCTCAGGAC--GAACGCTGGCGGCATGC--TCCGCAATGGG-----CGAAAGCCTGACGGAGCAATGCCGC   [69]
Bc._subtilis                --TTTATCGGA-----GAGTTTGATCCTGGCTCAGGAC--GAACGCTGGCGGCATGC--TCCGCAATGGA-----CGAAAGTCTGACGGAGCAACGCCGC   [84]
MY.CAP                      ----AAAATGA-----GAGTTTGATCCTGGCTCAGGAT--AAACGCTGGCGGCTGGC--TTCACAATGGA-----CGAAAGTCTGATGAAGCAATGCCGC   [82]
E._coli                     ---AAATTGAA-----GAGTTTGATCATGGCTCAGATT--GAACGCTGGCGGCAGGC--TGCACAATGGG-----CGCAAGCCTGATGCAGCCATGCCGC   [83]
MYX.XA                      ---CAATTGGA-----GAGTTTGATCCTGGCTCAGAAC--GAACGCTGGCGGCGTGC--TGCGCAATGGG-----CGAAAGCCTGACGCAGCAACGCCGC   [83]
P.TEST                      --CGAACTATA-----GAGTTTGATCCTGGCTCAGATT--GAACGCTGGCGGCATGC--TGGACAATGGG-----CGAAAGCCTGATCCAGCAATGCCGC   [84]
AG.TUM                      -CTCAACTTGA-----GAGTTTGATCCTGGCTCAGAAC--GAACGCTGGCGGCAGGC--TGGACAATGGG-----CGCAAGCCTGATCCAGCCATGCCGC   [85]
DV.DES                      --TGAACTGGA-----GAGTTTGATTCTGGCTCAGATT--GAACGCTGGCGGCGTGC--TGCGCAATGGG-----CGAAAGCCTGACGCAGCGACGCCGC   [84]
BA.FRG                      -TTACAACGAA-----GAGTTTGATCCTGGCTCAGGAT--GAACGCTAGCTACAGGC--TGGTCAATGGG-----CGCTAGCCTGAACCAGCCAAGTAGC   [85]
'Zea_mays_(chloroplast)'    --CTCAT-GGA-----GAGTTCGATCCTGGCTCAGGAT--GAACGCTGGCGGCATGC--TCCGCAATGGG-----CGAAAGCCTGACGGAGCAATGCCGC   [83]
T.AMIT                      ATCATAGTCAAAATCTGAGTTTGATCCTGGCTCAGAAG--GAACGCTAGCTATATGC--TGGACAATGGG-----CGAAAGCCCGATCCAGCAATATCGC   [91]

[                                    110       120       130       140       150       160       170       180       190       200]
[                                    .         .         .         .         .         .         .         .         .         .]

Homo_sapiens                ATAACA-AT-AC-AGG-------------------ACTCTTTCGAGGCC--CTGTAATTGGAATGAGTCCACTTT-AA---ATCCTTTAACGAGGA-TCC   [148]
Rattus_norvegicus           ATAACA-AT-AC-AGG-------------------ACTCTTTCGAGGCC--CTGTAATTGGAATGAGTCCACTTT-AA---ATCCTTTAACGAGGA-TCC   [148]
Xenopus_laevis              ATAACA-AT-AC-AGG-------------------ACTCTTTCGAGGCC--CTGTAATTGGAATGAGTACACTTT-AA---ATCCTTTAACGAGGA-TCT   [148]
A._salina                   ATAACG-AT-GC-AGG-------------------ACTCATCCGAGGCC--CTGTGATTGGAATGAGTACACTTT-AA---ATCCTTTAACGAGGA-TCC   [148]
S._cerevisiae               ATAACG-AT-AC-AGG-------------------GCCCATTCG-GGTC--TTGTAATTGGAATGAGTACAATGT-AA---ATACCTTAACGAGGA-ACA   [148]
P.MICA                      ATAACA-AT-AC-AGG-------------------GCATATCTG---TC--TTGTAATTGGAATGAGTAGAATTT-AA---ATCCCTTTACGAGTA-CCA   [145]
D.DISC                      ATATCA-AT-AC-CTA-------------------TCCTTTTTG-GAGG----GCAATTGAAATGAACACAAATT-AA---AACTCTTAATTAACA--CA   [145]
T.BRUC                      ATAGAG-CCGAC-CGT-------------------GCCCTAGTG-CATG--GTTGTTTTCAATGGGGGATACTCA-AACCCATCCAATATCGAGTA-ACA   [157]
E.GRAC                      GTAGCA-AC-CC-CGTC------------------GGCCTTACG-TGCCGATGGGGCTTGGAATGGACGCTATCC-AA---AGACAGCCGTGAGTA-TCA   [155]
Zea_mays                    ATAACA-AT-AC-CGG-------------------GCGCGTTAG-TGTC--TGGTAATTGGAATGAGTACAATCT-AA---ATCCCTTAACGAGGA-TCC   [148]
D._mobilis                  GTGCCC-CC-TT-ACG-------------------GG------G-GCTT--TTCCC-------------CGCTGT-AG---GAAGGCGGGG---GA-ATA   [129]
S._solfataricus             GTGCCT-CC-GC-AAG-------------------GA------G-GCTT--TTCCC-------------CGCTCT-AA---AAAGGCGGGG---GA-ATA   [127]
T._tenax                    GTGCCG-GG-CG-AAG-------------------AGCC---CG-GCTT--TTGCC-------------CGGTGT-AA---GGAGCCGGGC---GA-ATA   [130]
M._vannielii                GTGC-T-CA-TGCACA-------------------GCAT---GG-GCTT--TTATC-------------AAGTGT-AA---ACAGCTTGAG---GA-ATA   [130]
MB._formicicum              GTGCCA-CT-CTTAAC-------------------GGGG---TG-GCTT--TTCTT-------------AAGTGT-AA---AAAGCTTTTG---GA-ATA   [131]
MS._hungatei                GTGC----C-AGCACA-------------------GGCT---GG-CTGT--CCACC--------------AGTGT-AA---ATAACT-GGT---GA-AGA   [126]
H._volacanii                GTGCGAGGG-CA-TAT-------------------AGTC---CTCGCTT--TTCTC-------------GACCGT-AA---GGCGGTCGAG---GA-ATA   [132]
HC._morrhuae                GTGCGAGGG-CA-TAC-------------------AGTC---CTCGCTT--TTCGT-------------GACCGT-AA---GAAGGTCTCA---GA-ATA   [132]
H.HALO                      GTGTGAAGG-CA-TAG-------------------AGCC---TTCACTT--TTGTA-------------CACCGT-AA---GGTGGTGCAC---GA-ATA   [132]
H._cutirubrum               GTGTGAAGG-CA-TAG-------------------AGCC---TTCACTT--TTGTA-------------CACCGT-AA---GGTGGTGCAC---GA-ATA   [132]
AN._nidulans                GTGGGG-GA-GG-AAGGTT--TT-T-GGACTGTAAACCC---CT-TTTC--TCAGG-------------GAAGAA-GA---AAG----------------   [138]
HE.CHL                      GTGGGG-GA-TG-AAGGTC--TT-C-GGATTGTAAACCC---TT-GTCT--TCGGG-------------GAAGAA------------GTT----------   [121]
Bc._subtilis                GTGAGT-GA-TG-AAGGTT--TT-C-GGATCGTAAAGCT---CT-GTTG--TTAGG-------------GAAGAA-CA---AGTACCGTTC---GA-ATA   [150]
MY.CAP                      GTGAGT-GA-TG-ACGGCC--TT-C-GGGTTGTAAAGCT---CT-GTTG--TAAGG-------------GAAGAA-AA---AATAGAGTAG---GA-A-A   [147]
E._coli                     GTGTAT-GA-AG-AAGGCC--TT-C-GGGTTGTAAAGTA---CT-TTCA--GCGGG-------------GAGGAAGGG---AGTAAAGTT-----A-ATA   [148]
MYX.XA                      GTGTGT-GA-TG-AAGGTC--TT-T-GGATTGTAAAGCA---CT-TTCG--ACCGG-------------GAAGAA-AA---CCCGTTGGCT---AACATC   [150]
P.TEST                      GTGCAG-GA-TG-AAGGCC--CT-C-GGGTTGTAAACTG---CT-TTTG--TACGG-------------AACGAA--A---AGCCTGGGGC---TA-ATA   [149]
AG.TUM                      GTGAGT-GA-TG-AAGGCC--TT-A-GGGTTGTAAAGCT---CT-TTCA--CCGGA-------------GAAGAT-AA----------------------   [136]
DV.DES                      GTGAGG-GA-TG-AAGGTT--TT-C-GGATCGTAAACCT---CT-GTCA--GAAGG-------------GAAGAA-AC---TACGTTGTGC---TA-ATC   [150]
BA.FRG                      GTGAAG-GA-TG-AAGGCT--CTATGGGTCGTAAACTT---CT-TTTA-?-TATAA-------------GAATAA------AGTGCAGTAT---GT-ATA   [151]
'Zea_mays_(chloroplast)'    GTGGAG-GT-GG-AAGGCC--TA-C-GGGTCGTCAACTT---CT-TTTC--TCGGA-------------GAAGAA-------------------------   [132]
T.AMIT                      GTGAGT-GA-AG-AAGGGCAATG-C-CGCTTGTAAAGCT---CT-TTCG--TCGAG-------------TGCG---------------------------   [140]

[                                    210       220       230       240       250       260       270       280       290       300]
[                                    .         .         .         .         .         .         .         .         .         .]

Homo_sapiens                ATTGGAG-----------------------------GGCAAGTCTGGTGCCAGCAGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGCTGCA   [219]
Rattus_norvegicus           ATTGGAG-----------------------------GGCAAGTCTGGTGCCAGCAGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGCTGCA   [219]
Xenopus_laevis              ATTGGAG-----------------------------GGCAAGTCTGGTGCCAGCAGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGCTGCA   [219]
A._salina                   ATTGGAG-----------------------------GGCAAGTCTGGTGCCAGCAGCCGCGGTAACTCCAGCTCCAATAGCGTATATTAAAGTTGCTGCG   [219]
S._cerevisiae               ATTGGAG-----------------------------GGCAAGTCTGGTGCCAGCAGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGTTGCA   [219]
P.MICA                      ATTGGAG-----------------------------GGCAAGTCTGGTGCCAGCAGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGTTGCG   [216]
D.DISC                      ATTG?AG-----------------------------GGCAAGTCTGGTGCCAGCRGCCGCGGTAATTCCAGCTCCAATAGCATATACTAAAGTTGTTGCA   [216]
T.BRUC                      ATTGGAG-----------------------------GACAAGTCTGGTGCCAGCACCCGCGGTAATTCCAGCTCCAAAAGCGTATATTAATGCTGTTGCT   [228]
E.GRAC                      ACCGGAG-----------------------------GGCAAGTCTGGTGCCAGCAGCTGCGGTAATTCCAGCTCCGAGGGCGTATACTAACATTGCTGCT   [226]
Zea_mays                    ATTGGAG-----------------------------GGCAAGTCTGGTGCCAGCAGCCGCGGTAATTCCAGCTCCAATAGCGTATATTAAAGTTGTTGCA   [219]
D._mobilis                  AGCGGGG-----------------------------GGCAAGTCTGGTGTCAGCCGCCGCGGTAATACCAGCCCCGCGAGTGGTCGGGACGATTATTGGG   [200]
S._solfataricus             AGCGGGG-----------------------------GGCAAGTCTGGTGTCAGCCGCCGCGGTAATACCAGCTCCGCGAGTGGTCGGGGTGATTACTGGG   [198]
T._tenax                    AGCGGGG-----------------------------GGTAAGTCTGGTGTCAGCCGCCGCGGTAATACCAGCCCCGCGAGTGGTCAGGGTGATTACTGGG   [201]
M._vannielii                AGGGCTG-----------------------------GGCAAGTTCGGTGCCAGCAGCCGCGGTAATACCGACGGCCCGAGTGGTAGCCACTCTTATTGGG   [201]
MB._formicicum              AGAGCTG-----------------------------GGCAAGACCGGTGCCAGCCGCCGCGGTAACACCGGCAGCTCAAGTGGTGGCCGTTTTTATTGGG   [202]
MS._hungatei                AGGGC?G-----------------------------GGCAAG?????--------------GTAATACCG-------GAGTGGTGGCCGCTATTACTGGG   [176]
H._volacanii                AGAGCTG-----------------------------GGCAAGACCGGTGCCAGCCGCCGCGGTAATACCGGCAGCTCAAGTGATGACCGATATTATTGGG   [203]
HC._morrhuae                AGAGCTG-----------------------------GGCAAGACCGGTGCCAGCCGCCGCGGTAATACCGGCAGCTCGAGTGATAGCCACTATTATTGGG   [203]
H.HALO                      AGGACTG-----------------------------GGCAAGACCGGTGCCAGCCGCCGCGGTAATACCGGCAGTCCGAGTGATGGCCGATCTTATTGGG   [203]
H._cutirubrum               AGGACTG-----------------------------GGCAAGACCGGTGCCAGCCGCCGCGGTAATACCGGCAGTCCGAGTGATGGCCGATCTTATTGGG   [203]
AN._nidulans                -----------TGACGGTACCTGAGGAATAAGCCTCGGCTAATTCCGTGCCAGCAGCCGCGGTAATACGGGAGAGGCAAGCGTTATCCGGAATTATTGGG   [227]
HE.CHL                      ----------TTGACGGTACCCGAGGAGGAAGCCCCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGGGCAAGCGTTGTCCGGAATGACTGGG   [211]
Bc._subtilis                GGGCGGTACCTTGACGGTACCTAACCAGAAAGCCACGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGTGGCAAGCGTTGTCCGGAATTATTGGG   [250]
MY.CAP                      TGACTTTATCTTGACAGTACCTTACCAGAAAGCCACGGCTAACTATGTGCCAGCAGCCGCGGTAATACATAGGTGGCAAGCGTTATCCGGATTTATTGGG   [247]
E._coli                     CCTTTGCTCATTGACGTTACCCGCAGAAGAAGCACCGGCTAACTCCGTGCCAGCAGCCGCGGTAATACGGAGGGTGCAAGCGTTAATCGGAATTACTGGG   [248]
MYX.XA                      CAACGG---CTTGACGGTACCGGGAGAAGAAGCACCGGCTAACTCTGTGCCAGCAGCCGCGGTAATACAGAGGGTGCAAGCGTTGTTCGGAATTATTGGG   [247]
P.TEST                      TCCCCGGGTCATGACGGTACCGTAAGAATAAGCACCGGCTAACTACGTGCCAGCAGCCGCGGTAATACGTAGGGTGCAAGCGTTAATCGGAATTACTGGG   [249]
AG.TUM                      -----------TGACGGTATCCGGAGAAGAAGCCCCGGCTAACTTCGTGCCAGCAGCCGCGGTAATACGAAGGGGGCTAGCGTTGTTCGGAATTACTGGG   [225]
DV.DES                      AG-CAGCGTACTGACGGTACCTTCAAAGGAAGCACCGGCTAACTCCGTGCCAGCAGCCGCGGTAATACGGAGGGTGCAAGCGTTAATCGGAATTACTGGG   [249]
BA.FRG                      C-----TGTTTTGTATGTATTATATGAATAAGGATCGGCTAACTCCGTGCCAGCAGCCGCGGTAATACGGAGGATCCGAGCGTTATCCGGATTTATTGGG   [246]
'Zea_mays_(chloroplast)'    -------ACAATGACGGTATCTGAGGAATAAGCATCGGCTAACTCTGTGCCAGCAGCCGCGGTAAGACAGAGGATGCAAGCGTTATCCGGAATGATTGGG   [225]
T.AMIT                      ----CGATCAT-GACAGGACTCGAGGAAGAAGCCCCGGCTAACTCCGTGCCAGCAGCCGCGGTAAGACGGGGGGGGCAAGTGTTCTTCGGAATGACTGGG   [235]

[                                    310       320       330       340       350       360       370       380       390       400]
[                                    .         .         .         .         .         .         .         .         .         .]

Homo_sapiens                GTTAAAAAGCTCGTAGTTGGATCTTGGGAGCGGGCGGGCGGTCCGCC-----------------------------------------------------   [266]
Rattus_norvegicus           GTTAAAAAGCTCGTAGTTGGATCTTGGGAGCGGGCGGGCGGTCCGCC-----------------------------------------------------   [266]
Xenopus_laevis              GTTAAAAAGCTCGTAGTTGGATCTTGGGATCGAGCTGGCGGTCCGCCGCGAGGC----------------------------------------------   [273]
A._salina                   GTTAAAAAGCTCGTAGTTGGATATGGGTCTCGGTCGGGTGGTGCCGCCTCAC------------------------------------------------   [271]
S._cerevisiae               GTTAAAAAGCTCGTAGTTGAACTTTGGGCCCGGTTGGCCGGTCCGATTTTTT------------------------------------------------   [271]
P.MICA                      GTTAAAAAGCTCGTAGTTGGATTTCTGCCGAGGACGACCGGTCCGCCTCT--------------------------------------------------   [266]
D.DISC                      GTTAAAAAGCTCGTAGTTGAAGTTTAAGGTTTACCGGGTTTATGTCATTTACCACTT-------------------------------------------   [273]
T.BRUC                      GTTAAAGGGTTCGTAGTTGAACTGTGGGCCACGTAGTTTTGTGCCGTGCCAGTC----------CCGTCCA--------CCTCGGAC-------GTGTT-   [302]
E.GRAC                      GTTAAAACACTTGTAGTCTGCCTACGGGCTGCA-GGTCTGCTGGGTGGCCGGTTTGTTGTTTCTCTGGCCAGGGAAGGACCTCGGTTCGACCCTGTGTTG   [325]
Zea_mays                    GTTAAAAAGCTCGTAGTTGGACCTTGGGCCGGGCCGGGTGCCGCCGCC----------------------------------------------------   [267]
D._mobilis                  CCTAAAGCGCCCGTAGCCG--------GCCCGGCAAGTCCCCTC--------------------------------------------------------   [236]
S._solfataricus             CCTAAAGCGCCTGTAGCCG--------GCCCACCAAGTCGCCCC--------------------------------------------------------   [234]
T._tenax                    CTTAAAGCGCCCGTAGCCG--------GCCCGGCAAGTCGCTCC--------------------------------------------------------   [237]
M._vannielii                CCTAAAGCGTCCGTAGCCG--------GTCCAGTAAGTCCCTGT--------------------------------------------------------   [237]
MB._formicicum              CCTAAAGCGTTCGTAGCCG--------GCTTGATAAGTCTCTGG--------------------------------------------------------   [238]
MS._hungatei                CTTAAAGGGTCCGTAGCTG--------GATATACAAGTCCCTTG--------------------------------------------------------   [212]
H._volacanii                CCTAAAGCGTCCGTAGCCG--------GCCACGAAGGTTCATCG--------------------------------------------------------   [239]
HC._morrhuae                CCTAAAGCGTCCGTAGCCG--------GCCGAACAGGTCCGTCG--------------------------------------------------------   [239]
H.HALO                      CCTAAAGCGTCCGTAGCTG--------GCTGAACAAGTCCGTTG--------------------------------------------------------   [239]
H._cutirubrum               CCTAAAGCGTCCGTAGCTG--------GCTGAACAAGTCCGTTG--------------------------------------------------------   [239]
AN._nidulans                CGTAAAGCGCCTGCAGGCG--------GTTAATCAAGTCTGTTG--------------------------------------------------------   [263]
HE.CHL                      CGTAAAGCGCGTGCAGGCG--------GACATGTAAGTCTGAGG--------------------------------------------------------   [247]
Bc._subtilis                CGTAAAGCGCTCGCAGGCG--------GTTTCTTAAGTCTGATG--------------------------------------------------------   [286]
MY.CAP                      CGTATAGGGTGCGTAGGCG--------GTTTTGCAAGTTTGAGG--------------------------------------------------------   [283]
E._coli                     CGTAAAGCGCACGCAGGCG--------GTTTGTTAAGTCAGATG--------------------------------------------------------   [284]
MYX.XA                      CGTAAAGCGCGTGTAGGCG--------GCGTGACAAGTCGGGTG--------------------------------------------------------   [283]
P.TEST                      CGTAAAGCGTGCGCAGGCG--------GTTTTGTAAGACAGTGG--------------------------------------------------------   [285]
AG.TUM                      CGTAAAGCGCACGTAGGCG--------GATATTTAAGTCAGGGG--------------------------------------------------------   [261]
DV.DES                      CGTAAAGCGCACGTAGGCT--------GTAGTGTAAGTCAGGGG--------------------------------------------------------   [285]
BA.FRG                      TTTAAAGGGAGCGTAGGTG--------GACTGGTAAGTCAGTTG--------------------------------------------------------   [282]
'Zea_mays_(chloroplast)'    CGTAAAGCGTCTGTAGGTG--------GCTTTTCAAGTCCGCCG--------------------------------------------------------   [261]
T.AMIT                      CGTAAAGGGCACGTAGGCG--------GTGAATCGGGTTGAAAG--------------------------------------------------------   [271]

[                                    410       420       430       440       450       460       470       480       490       500]
[                                    .         .         .         .         .         .         .         .         .         .]

Homo_sapiens                ---------GCGAGGCGAGCCACCGCCC-GTCCCC---GCCCCTTGCCTCTCGG-CG-CCCC--------------------------------------   [313]
Rattus_norvegicus           ---------GCGAGGCGGCTCAGCGCCCTGTCCCC---AGCCCCTGCCTCTCGG-CG-CCCC--------------------------------------   [314]
Xenopus_laevis              --------GGCTAC-CGCCTGTCCCAGCCCCTGCCTCTCGGCGCCTCCCCGATG-CT-CTTG--------------------------------------   [324]
A._salina                   --------GGTGGTCACTGCCTCGATCGGACAATTCATTGGATCGTTCGGGGTG-CT-CTTA--------------------------------------   [323]
S._cerevisiae               --------CGTGTACTGGATTTCCAACGGGGCCTT---TCCTTCTGGCTAACCT-TG-AGTC--------------------------------------   [320]
P.MICA                      ---------GGGTGAGTATCTGCTCGCCTGGCATC---TTCTT--GGAGAACGT-AG-CTGG--------------------------------------   [312]
D.DISC                      --------CGTGGT-TAAATCGACACCGGTATCTCT-TTCTTAATAGTTCAGCT-TG-TATT--------------------------------------   [323]
T.BRUC                      ------------TTGACCCACGCCCTCGTGGCCCG---TGAACACACTCAGATA-CA-AG--AAACACGGGAGCGGTTCCT------------CCTCACT   [371]
E.GRAC                      GGCTGCAACGGCTGGACTCAACCCCCAGTGGTACG---TCCCTGCGCCCACCTC-TC-AGTCGATGGTGAGATCTGCTCCTGCCAAAAGTCTGCTTCACT   [420]
Zea_mays                    ---------GTACG-GGCAGAACCGACCGGCTCGA---CCCTTCTGCCGGCGAT-GC-GCTC--------------------------------------   [314]
D._mobilis                  ---------------CTAAATTCCCG-------------------GGCTCAACC-CG-GG----------------------------------------   [260]
S._solfataricus             ---------------TTAAAGTCCCC-------------------GGCTCAACC-GG-GG----------------------------------------   [258]
T._tenax                    ---------------TGAAATCCCCA-------------------GGCTCAACC-TG-GG----------------------------------------   [261]
M._vannielii                ---------------TTAAATTCTCT-------------------GGCTTAACCA-G-AG----------------------------------------   [261]
MB._formicicum              ---------------TGAAATCTCAC-------------------GGCTTAACCGTG-AG----------------------------------------   [263]
MS._hungatei                ---------------AGAAATCCGCC-------------------GGCTTAACCG-G-TG----------------------------------------   [236]
H._volacanii                ---------------GGAAATCCGCC-------------------AGCTCAACT-GG-CG----------------------------------------   [263]
HC._morrhuae                ---------------GGAAATCCACC-------------------CGCTCAACG-GGTGG----------------------------------------   [264]
H.HALO                      ---------------GGAAATCTGTC-------------------CGCTTAACG-GG-CA----------------------------------------   [263]
H._cutirubrum               ---------------GGAAATCTGTC-------------------CGCTTAACG-GG-CA----------------------------------------   [263]
AN._nidulans                ---------------TCAAAGCGTGG-------------------GGCTCAACC-TC-AT----------------------------------------   [287]
HE.CHL                      ---------------TGAAAGCTTGG-------------------AGCTCAACT-CC-GA----------------------------------------   [271]
Bc._subtilis                ---------------TGAAAGCCCCC-------------------GGCTCAACC-GG-GG----------------------------------------   [310]
MY.CAP                      ---------------TTAAAGTCCGG-------------------AGCTCAACT-CC-GG----------------------------------------   [307]
E._coli                     ---------------TGAAATCCCCG-------------------GGCTCAACC-TG-GG----------------------------------------   [308]
MYX.XA                      ---------------TGAAAGCCCTC-------------------AGCTCAACT-GA-GG----------------------------------------   [307]
P.TEST                      ---------------TGAAATCCCCG-------------------GGCTCAACC-TG-GG----------------------------------------   [309]
AG.TUM                      ---------------TGAAATCCCAG-------------------AGCTCAACT-CT-GG----------------------------------------   [285]
DV.DES                      ---------------TGAAATCCCAC-------------------GGCTCAACC-GT-GG----------------------------------------   [309]
BA.FRG                      ---------------TGAAAGTTTGC-------------------GGCTCAACC-GT-AA----------------------------------------   [306]
'Zea_mays_(chloroplast)'    ---------------TCAAATCCCAG-------------------GGCTCAACC-CT-GG----------------------------------------   [285]
T.AMIT                      ---------------TGAAAGTCGCC-------------------AAA--AAGT-GG-CG----------------------------------------   [293]

[                                    510       520       530       540       550       560       570       580       590       600]
[                                    .         .         .         .         .         .         .         .         .         .]

Homo_sapiens                --------------CTCGATGCTCT-TAG-----------------------------------CT-GAGTGTCCCGCGGGGCCCGAAGCGTTTACTT--   [360]
Rattus_norvegicus           --------------CTCGATGCTCT-TAG-----------------------------------CT-GAGTGTCCCGCGGGGCCCGAAGCGTTTACTT--   [361]
Xenopus_laevis              --------------ACTGAGTGTCC-CGG-----------------------------------GG-GC--------------CCGAAGCGTTTACTT--   [357]
A._salina                   --------------ACCGAGTGTCC-TGG-----------------------------------GT-GG--------------CCGATACGTTTACTT--   [356]
S._cerevisiae               --------------CTTGTGGCTCT-TGG-----------------------------------CG-AA--------------CCAGGACTTTTACTT--   [353]
P.MICA                      --------------CACTTGACTGTGTGG-------------------------------TGCGGT-AT--------------CCAGGACTTTTACTT--   [350]
D.DISC                      --------------ATCTTTGATAG-TGC-----------------------------------TT-GT--------------TTGGACATTTCACTG--   [356]
T.BRUC                      --------------TTCACGCATGT-CATGCATGCGAGGGG------------------------G-CG--------------TCCGTGAATTTTACTGT   [417]
E.GRAC                      GCAGGCCAAAGCGGTTTATGCCTCC-CGCACTGGCAACGGACACCAACAGGGGACCCAGC--CTCG-AG--------------CTGGGTAGTCTACCTCT   [502]
Zea_mays                    --------------CTGGCCTTAAC-TGG-----------------------------------CC-GGGT------CGTGCCTCCGGGCCGTTACTT--   [355]
D._mobilis                  -------------------GACTGG-AGG-----------------------------------GG-A--------------------------------   [272]
S._solfataricus             -------------------AACTGG-GGG-----------------------------------CG-A--------------------------------   [270]
T._tenax                    -------------------GGCAGG-GGG-----------------------------------CG-A--------------------------------   [273]
M._vannielii                -------------------GACTGG-CAG-----------------------------------GG-A--------------------------------   [273]
MB._formicicum              -------------------AATTGC-TGG-----------------------------------AG-A--------------------------------   [275]
MS._hungatei                -------------------GCGTTC-AGG-----------------------------------GG-A--------------------------------   [248]
H._volacanii                -------------------GGCGTC-CGG-----------------------------------TGAA--------------------------------   [276]
HC._morrhuae                -------------------GACGTC-CGG-----------------------------------CGGA--------------------------------   [277]
H.HALO                      -------------------GGCGTC-CAG-----------------------------------CGGA--------------------------------   [276]
H._cutirubrum               -------------------GGCGTC-CAG-----------------------------------CGGA--------------------------------   [276]
AN._nidulans                -------------------ACAGGC-AAT-----------------------------------GG-A--------------------------------   [299]
HE.CHL                      -------------------AACGGC-CTT-----------------------------------GG-A--------------------------------   [283]
Bc._subtilis                -------------------AGGGTC-ATT-----------------------------------GG-A--------------------------------   [322]
MY.CAP                      -------------------TTCGCC--TT-----------------------------------GA-A--------------------------------   [318]
E._coli                     -------------------AACTGC-ATC-----------------------------------TG-A--------------------------------   [320]
MYX.XA                      -------------------AAGTGC-GCC-----------------------------------CG-A--------------------------------   [319]
P.TEST                      -------------------AACTGC-CAT-----------------------------------TG-T--------------------------------   [321]
AG.TUM                      -------------------AACTGC-CTT-----------------------------------TG-A--------------------------------   [297]
DV.DES                      -------------------AACTGC-CTT-----------------------------------TG-A--------------------------------   [321]
BA.FRG                      -------------------AATTGC-AGC-----------------------------------TG-A--------------------------------   [318]
'Zea_mays_(chloroplast)'    -------------------ACAGGC-GGT-----------------------------------GG-A--------------------------------   [297]
T.AMIT                      -------------------GAATGC-TCT-----------------------------------CG-A--------------------------------   [305]

[                                    610       620       630       640       650       660       670       680       690       700]
[                                    .         .         .         .         .         .         .         .         .         .]

Homo_sapiens                ----------------------------------TGAAAAAATTAGAGTGTTCAAAGCA----------GGCCCGAGCCGCCT-------GGATACCG-C   [408]
Rattus_norvegicus           ----------------------------------TGAAAAAATTAGAGTGTTCAAAGCA----------GGCCCGAGCCGCCT-------GGATACCG-C   [409]
Xenopus_laevis              ----------------------------------TGAAAAAATTAGAGTGTTCCAAGCA----------GGC-CGCGTCGCCT-------GGATACTT-C   [404]
A._salina                   ----------------------------------TGAACAAATTAGAGTGCTTAAAGCA----------GGTGCACCGCGCCT-------GAATATCA-C   [404]
S._cerevisiae               ----------------------------------TGAAAAAATTAGAGTGTTCAAAGCA----------GGC--GTATTGCTC-------GAATATAT-T   [399]
P.MICA                      ----------------------------------TGAGGAAATTAGAGTGTTTCAAGCC----------AGT---TACGCCTT-------GAATACAT-T   [395]
D.DISC                      ----------------------------------TGAGAAAATTGTGGTGTTTAAAGCA----------GGC--GTCTCGCCT-------GATCTTTTGC   [403]
T.BRUC                      GACC--------------------------------AAAAA----AGTGCGACCAAAGCAGTCTGCCGAC-T--TGAATTACAAAGCATGGGATAACG-A   [477]
E.GRAC                      GGTCCACCACCGGAGCCCACCGTCTTCGACACCCTGGAAAACTCAGTGTGCTCAAAGCATCCCCGCGACGGC--TGAATGTCCATCCATGGAATGTCA-A   [599]
Zea_mays                    ----------------------------------TGAAGAAATTAGAGTGCTCAAAGCA----------AGC---CATCGCTCT------GGATACAT-T   [401]
D._mobilis                  ---------------------------------------------------------------------------TACTGCCG-------GGCTA-----   [285]
S._solfataricus             ---------------------------------------------------------------------------TACTGGTG-------GGCTA-----   [283]
T._tenax                    ---------------------------------------------------------------------------TACTGCCG-------GGCTA-----   [286]
M._vannielii                ---------------------------------------------------------------------------TACTGCTG-------GACTT-----   [286]
MB._formicicum              ---------------------------------------------------------------------------TACTATTA-------GCCTT-----   [288]
MS._hungatei                ---------------------------------------------------------------------------AACTGTAT-------TTCTA-----   [261]
H._volacanii                ---------------------------------------------------------------------------AACCACGT-------GGCTT-----   [289]
HC._morrhuae                ---------------------------------------------------------------------------AACCAGTC-------GGCTT-----   [290]
H.HALO                      ---------------------------------------------------------------------------AACTGTTC-------AGCTT-----   [289]
H._cutirubrum               ---------------------------------------------------------------------------AACTGTTC-------AGCTT-----   [289]
AN._nidulans                ---------------------------------------------------------------------------AACTGATT-------GACTA-----   [312]
HE.CHL                      ---------------------------------------------------------------------------AACTGGAT-------GTCTT-----   [296]
Bc._subtilis                ---------------------------------------------------------------------------AACTGGGG-------AACTT-----   [335]
MY.CAP                      ---------------------------------------------------------------------------GACTGTTT-------TACTA-----   [331]
E._coli                     ---------------------------------------------------------------------------TACTGGCA-------AGCTT-----   [333]
MYX.XA                      ---------------------------------------------------------------------------AACTGTTG-------TGCTT-----   [332]
P.TEST                      ---------------------------------------------------------------------------GACTGCAA-------GGCTA-----   [334]
AG.TUM                      ---------------------------------------------------------------------------TACTGGGT-------ATCTT-----   [310]
DV.DES                      ---------------------------------------------------------------------------TACTGCAC-------AACTT-----   [334]
BA.FRG                      ---------------------------------------------------------------------------TACTGTCA-------GTCTT-----   [331]
'Zea_mays_(chloroplast)'    ---------------------------------------------------------------------------AACTACCA-------AGCTG-----   [310]
T.AMIT                      ---------------------------------------------------------------------------AACCAATT-------CACTT-----   [318]

[                                    710       720       730       740       750       760       770       780       790       800]
[                                    .         .         .         .         .         .         .         .         .         .]

Homo_sapiens                AGCTAGGAATAA---TGGAATAGGA-------------C-CGCGGTTCTATTTTG-------------TTGGTTTTC------GGAACT-G---------   [462]
Rattus_norvegicus           AGCTAGGAATAA---TGGAATAGGA-------------C-CGCGGTTCTATTTTG-------------TTGGTTTTC------GGAACT-G---------   [463]
Xenopus_laevis              AGCTAGGAATAA---TGGAATAGGA-------------C-TCCGGTTCTATTTTG-------------TTGGTTTTC------GGAACT-G---------   [458]
A._salina                   AGCATGGAATGA---TGGAATAGGA-------------C-CTCGGTCTTATTATG-------------TTGGTTTTC------TGGACTTG---------   [459]
S._cerevisiae               AGCATGGAATAA---TAGAATAGGA-------------CGTTTGGTTCTATTTTG-------------TTGGTTTCT------AGGACC-A---------   [454]
P.MICA                      AGCATGGAATAA---TAAGATAGGA-------------C-CTCGGTTCTATTTTG-------------TTGGTTTCT------AGAGCT-G---------   [449]
D.DISC                      AGCATGGTATGA---TGAAACATGA-------------CATTTTACGCTATTGGT-------------TTGCGTTTA------AAG--------------   [454]
T.BRUC                      AGCATCAGCCCTGGG-GCCACCGTTTCGGCTTTTGTTGGTTTTAGAAGTCCTTGGGAGATTATGGGGCCGCGTGCCTTGGGTCGGTGTT-TCGTGTCTCA   [575]
E.GRAC                      GGCATCGACCAAGTGTGGCA----TTGGAGTTGTGCTGCCTTGGGGCCCACTCTGGACAACCTGGTGGTGTGTTCCTG----CAGGATC-AACAGGATCG   [690]
Zea_mays                    AGCATGGGATAA---CATCATAGGA-------------T-TCCGGTCCTATTGTG-------------TTGGCCTTC------GGGATC-G---------   [455]
D._mobilis                  ----------------------------------------------------------------------------------------------------   [285]
S._solfataricus             ----------------------------------------------------------------------------------------------------   [283]
T._tenax                    ----------------------------------------------------------------------------------------------------   [286]
M._vannielii                ----------------------------------------------------------------------------------------------------   [286]
MB._formicicum              ----------------------------------------------------------------------------------------------------   [288]
MS._hungatei                ----------------------------------------------------------------------------------------------------   [261]
H._volacanii                ----------------------------------------------------------------------------------------------------   [289]
HC._morrhuae                ----------------------------------------------------------------------------------------------------   [290]
H.HALO                      ----------------------------------------------------------------------------------------------------   [289]
H._cutirubrum               ----------------------------------------------------------------------------------------------------   [289]
AN._nidulans                ----------------------------------------------------------------------------------------------------   [312]
HE.CHL                      ----------------------------------------------------------------------------------------------------   [296]
Bc._subtilis                ----------------------------------------------------------------------------------------------------   [335]
MY.CAP                      ----------------------------------------------------------------------------------------------------   [331]
E._coli                     ----------------------------------------------------------------------------------------------------   [333]
MYX.XA                      ----------------------------------------------------------------------------------------------------   [332]
P.TEST                      ----------------------------------------------------------------------------------------------------   [334]
AG.TUM                      ----------------------------------------------------------------------------------------------------   [310]
DV.DES                      ----------------------------------------------------------------------------------------------------   [334]
BA.FRG                      ----------------------------------------------------------------------------------------------------   [331]
'Zea_mays_(chloroplast)'    ----------------------------------------------------------------------------------------------------   [310]
T.AMIT                      ----------------------------------------------------------------------------------------------------   [318]

[                                    810       820       830       840       850       860       870       880       890       900]
[                                    .         .         .         .         .         .         .         .         .         .]

Homo_sapiens                -------------------------AGGCCATGATT----------------------------------------AAGAGGGACGGCCGGGGGCATTCG   [497]
Rattus_norvegicus           -------------------------AGGCCATGATT----------------------------------------AAGAGGGACGGCCGGGGGCATTCG   [498]
Xenopus_laevis              -------------------------GGGCCATGATT----------------------------------------AAGAGGGACGGCCGGGGGCATTCG   [493]
A._salina                   -------------------------AGGTAATGGTT----------------------------------------AACAGAGACAGACGGGGGCATTCG   [494]
S._cerevisiae               -------------------------TCGTAATGATT----------------------------------------AATAGGGACGGTCGGGGGCATCGG   [489]
P.MICA                      -------------------------AGGTAATGATT----------------------------------------AATAGGGATAGTTGGGGGCATTCG   [484]
D.DISC                      --------------------------TGTAATGATT----------------------------------------AATAGGGATGGATGGGGGTGTTCA   [488]
T.BRUC                      TTTTTGTGGCGCGCACATTCGGCTCTTCGTGATGTTTTTTTACATTCATTGCGACGCGCGGCTTCCAGGAAT--GAAGGAGGGTAGTTCGGGGGAGAACG   [673]
E.GRAC                      TTGCCCTGCCTGGCC--TTCGGGTCTCGTCAGGCTTCGTCCCCTGTCCCTGCAGCTTGCACCCATCGATCGTAAGTGATGGGACTGTTCGGGGTGAAAGA   [788]
Zea_mays                    -------------------------GAGTAATGATT----------------------------------------AATAGGGACAGTCGGGGGCATTCG   [490]
D._mobilis                  -------------------------------------------------------------------------------GGGGGTGGGAGAGGCCGAGGG   [306]
S._solfataricus             -------------------------------------------------------------------------------GGGGGCGGGAGAGGCGGGGGG   [304]
T._tenax                    -------------------------------------------------------------------------------GGGGGCGGGAGAGGCCGCCGG   [307]
M._vannielii                -------------------------------------------------------------------------------GGGACCGGGAGAGGACAAGGG   [307]
MB._formicicum              -------------------------------------------------------------------------------GAGGCCGGGAGAGGTTAGCGG   [309]
MS._hungatei                -------------------------------------------------------------------------------GGGACCGGGAGAGGTGAGAGG   [282]
H._volacanii                -------------------------------------------------------------------------------GGGACCGGAAGGCTCGAGGGG   [310]
HC._morrhuae                -------------------------------------------------------------------------------GGGGCCGGGAGACCAGAGAGG   [311]
H.HALO                      -------------------------------------------------------------------------------GGGACCGGAAGACCTGAGGGG   [310]
H._cutirubrum               -------------------------------------------------------------------------------GGGACCGGAAGACCTGAGGGG   [310]
AN._nidulans                -------------------------------------------------------------------------------GAGTATGGTAGGGGTAGCGGG   [333]
HE.CHL                      -------------------------------------------------------------------------------GAGAGATGGAGAGGATAGCGG   [317]
Bc._subtilis                -------------------------------------------------------------------------------GAGTGCAGAAGAGGAGAGTGG   [356]
MY.CAP                      -------------------------------------------------------------------------------GAATGCAAGAGAGGTAAGCGG   [352]
E._coli                     -------------------------------------------------------------------------------GAGTCTCGTAGAGGGGGGTAG   [354]
MYX.XA                      -------------------------------------------------------------------------------GAGTGCCGGA?AGGGTGGCGG   [353]
P.TEST                      -------------------------------------------------------------------------------GAGTGCGGCAGAGGGGGATGG   [355]
AG.TUM                      -------------------------------------------------------------------------------GAGTATGGAAGAGGTAAGTGG   [331]
DV.DES                      -------------------------------------------------------------------------------GAATCCGGGAGAGGGTGGCGG   [355]
BA.FRG                      -------------------------------------------------------------------------------GAGTACAGTAGAGGTGGGCGG   [352]
'Zea_mays_(chloroplast)'    -------------------------------------------------------------------------------GAGTACGGTAGGGGCAGAGGG   [331]
T.AMIT                      -------------------------------------------------------------------------------GAGTGAGACAGAGGAGAGTGG   [339]

[                                    910       920       930       940       950       960       970       980       990       1000]
[                                    .         .         .         .         .         .         .         .         .         .]

Homo_sapiens                TATTGCGCCGCTA--GAGGTGAAATTCTTGGACCGGCGCAAGACGGACCAGAGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCAAGAACGAAAGTCG   [595]
Rattus_norvegicus           TATTGCGCCGCTA--GAGGTGAAATTCTTGGACCGGCGCAAGACGGACCAGAGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCAAGAACGAAAGTCG   [596]
Xenopus_laevis              TATTGTGCCGCTA--GAGGTGAAATTCTTGGACCGGCGCAAGACGAACCAAAGCGAAAGCATTTGCCAAGAATGTTTTCATTAATCAAGAACGAAAGTCG   [591]
A._salina                   TACTGCGACGCTA--GAGGTGAAATTCTTGGACCGTCGCAAGACGAACAACTGCGAACAAGTTTGCCAAGAATGTTTTCATTAATCAAGAACGAAAGTTA   [592]
S._cerevisiae               TATT-CAATTGTC--GAGGTGAAATTCTTGGATTTATTGAAGACTAACTACTGCGAAAGCGTTTGCCAAGGACGTTTTCGTTAATCAAGAACGAAAGTTG   [586]
P.MICA                      TATT-TAACTGGTCAGAGGTGAAATTCTCGGATTTGTTAAAGACGGACTACTGCGAAAGCATTTGCCAAGGATGTTTTCATTGATCAAGAACGAAAGTTA   [583]
D.DISC                      TATTGGTGGGCGA--GAGGTGAAATTCGTTGACCCTATCAAGATGAACTTCTGCGAAAGCATTCACCAAATACTTCCCCATTAATCAAGAACGAAAGTTT   [586]
T.BRUC                      TACT-GGTGCGTCA-GAGGTGAAATTCTTAGACCGCACCAAGACGAACTACAGCGAAGGCATTCTTCAAGGATACCTTCCTCAATCAAGAACCAAAGTGT   [771]
E.GRAC                      TACG-GGAGCGCCA-GAGGTGAAATTCTTAGATCGCTGCCAGATCCACTGCAGCGAAGGCGTTCTGCAAGTGCACGTCCGTCGATCAAGAATGAGAGTTC   [886]
Zea_mays                    TATTTCATAGTCA--GAGGTGAAATTCTTGGATTTATGAAAGACGAACAACTGCGAAAGCATTTGCCAAGGATGTTTTCATTAATCAAGAACGAAAGTTG   [588]
D._mobilis                  TACTCCCGGGGTA--GGGGCGAAATCCTATAATCCCGGGAGGACCACCAGTGGCGAAGGCGCTCGGCTGGAACACGCCCGACGGTGAGGGGCGAAAGCCG   [404]
S._solfataricus             TACTCCCGGAGTA--GGGGCGAAATCCTTAGATACCGGGAGGACCACCAGTGGCGGAAGCGCCCCGCTAGAACGCGCCCGACGGTGAGAGGCGAAAGCCG   [402]
T._tenax                    TACTCCGGGGGTA--GGGGCGAAATCCTATAATCCCCGGAGGACCACCAGTGGCGAAAGCGGGCGGCCAGAACGCGCCCGACGGTGAGGGGCGAAAGCCG   [405]
M._vannielii                TACTCCAGGGGTA--GCGGTGAAATGTGTTGATCCTTGGAGGACCACCTATGGCGAAGGCACTTGTCTGGAACGGGTCCGACGGTGAGGGACGAAAGCCA   [405]
MB._formicicum              TACTCCCGGGGTA--GGGGTGAAATCCTATAATCCCGGGAGGACCACCTGTGGCGAAGGCGGCTAACTGGAACGGGCCTGACGGTGAGTAACGAAAGCCA   [407]
MS._hungatei                TACTGCCGGGGTA--GGAGTGAAATCCTGTAATCCCGGTGGGACCACCTATGGCGAAGGCATCTCACCAGAACGGGTCCGACAGTGAGGGACGAAAGCTG   [380]
H._volacanii                TACGTCCGGGGTA--GGAGTGAAATCCCGTAATCCTGGACGGACCACCGATGGCGAAAGCACCTCGAGAAGACGGATCCGACGGTGAGGGACGAAAGCTA   [408]
HC._morrhuae                TACGTCCGGGGTA--GGAGTGAAATCCTGTAATCCTGGACGGACCACCGGTAGCGAAAGCGTCTCTGGAGAACGGACCCGACGGTGAGGGACGAAAGCTT   [409]
H.HALO                      TACGTCTGGGGTA--GGAGTGAAATCCTGTAATCCTGGACGGACCGCCGGTGGCGAAAGCGCCTCAGGAGAACGGATCCGACAGTGAGGGACGAAAGCTA   [408]
H._cutirubrum               TACGTCTGGGGTA--GGAGTGAAATCCTGTAATCCTGGACGGACCGCCGGTGGCGAAAGCGCCTCAGGAGAACGGATCCGACAGTGAGGGACGAAAGCTA   [408]
AN._nidulans                AATTCCAGGTGTA--GCGGTGAAATGCGTAGATATCTGGAAGAACACCAGCGGCGAAAGCGCGCTACTGGGCCATAACTGACGCTCATGGACGAAAGCTA   [431]
HE.CHL                      AATTCCCGGTGTA--GCGGTGAAATGCGTAGATATCGGGAGGAACACCCGTGGCGAAGGCGGCTATCTGGACATTATCTGACGCTGAGGCGCGAAAGCGT   [415]
Bc._subtilis                AATTCCACGTGTA--GCGGTGAAATGCGTAGAGATGTGGAGGAACACCAGTGGCGAAGGCGGCTCTCTGGTCTGTAACTGACGCTGAGGAGCGAAAGCGT   [454]
MY.CAP                      AATTCCATGTGTA--GCGGTGAAATGCGTAGATATATGGAAGAACACCTGTGGCGAAAGCGGCTTACTGGCTTGTTATTGACGCTGAGGCACGAAAGCGT   [450]
E._coli                     AATTCCAGGTGTA--GCGGTGAAATGCGTAGAGATCTGGAGGAATACCGGTGGCGAAGGCGGCCCCCTGGACGAAGACTGACGCTCAGGTGCGAAAGCGT   [452]
MYX.XA                      AATTCCCCAAGTA--GAGGTGAAATTCGTAGATATGGGGAGGAACACCGGTGGCGAAGGCGGCCACCTGGACGGTAACTGACGCTGAGACGCGAAAGCGT   [451]
P.TEST                      AATTCCGCGTGTA--GCAGTGAAATGCGTAGATATGCGGAGGAACACCGATGGCGAAGGCAATCCCCTGGGCCTGCACTGACGCTCATGCACGAAAGCGT   [453]
AG.TUM                      AATTCCGAGTGTA--GAGGTGAAATTCGTAGATATTCGGAGGAACGCCAGTGGCGAAGGCGGCTTACTGGTCCATTACTGACGCTGAGGTGCGAAAGCGT   [429]
DV.DES                      AATTCCAGGTGTA--GGAGTGAAATCCGTAGATATCTGGAGGAACATCAGTGGCGAAGGCGGCCACCTGGACCGGTATTGACGCTGAGGTGCGAAAGCGT   [453]
BA.FRG                      AATTCGTGGTGTA--GCGGTGAAATGCTTAGATATCACGAAGAACTCCGATTGCGAAGGCAGCTCACTGGACTGCAACTGACACTGATGCTCGAAAGTGT   [450]
'Zea_mays_(chloroplast)'    AATTTCCGGTGGA--GCGGTGAAATGCATTGAGATCGGAAAGAACACCAACGGCGAAAGCACTCTGCTGGGCCGACACTGACACTGAGAGACGAAAGCTA   [429]
T.AMIT                      AATTTCGTGTGTA--GGGGTGAAATCCGTAGATCTACGAAGGAACGCCAAAAGCGAAGGCAGCTCTCTGGGTCCCTACCGACGCTGGGGTGCGAAAGCAT   [437]

[                                    1010      1020      1030      1040      1050      1060      1070      1080      1090      1100]
[                                    .         .         .         .         .         .         .         .         .         .]

Homo_sapiens                GAGGTTCGAAGACGATCAGATACCGTCGTAGTTCCG--ACCATAAACGATGCCGACCGGCG-------------ATGCGGCG------------------   [662]
Rattus_norvegicus           GAGGTTCGAAGACGATCAGATACCGTCGTAGTTCCG--ACCATAAACGATGCCGACTGGCG-------------ATGCGGCG------------------   [663]
Xenopus_laevis              GAGGTTCGAAGACGATCAGATACCGTCGTAGTTCCG--ACCATAAACGATGCCGACTAGCG-------------ATCCGGCG------------------   [658]
A._salina                   GAGGTTCGAAGGCGATCAGATACCGCCCTAGTTCTA--ACCATAAACGATGCCAACCAGCG-------------ATCCGCGG------------------   [659]
S._cerevisiae               AGGGATCGAAGACGATCTGATACCGTCGTAGTCTTA--ACCATAAACTATGCCGACTAG---------------ATCGGGTG------------------   [651]
P.MICA                      GGGGATCGAAGACGATCAGATACCGTCCTAGTCTTA--ACCATAAACCATGCCGACTAG-------------AGATTGGAGG------------------   [650]
D.DISC                      GGGGATCGAAGACGATCAGATACCGTCGTAGTCCAA--ACTATAAACTATGTCGACCAGGG-------------ATCGGTTA------------------   [653]
T.BRUC                      GGGGATCAAAGATGATTAGAGACCATTGTAGTCCAC--ACTGCAAACCATGACACCCATGAATTGGGGAACATCATTGGGTGCCCGTGTGGCGGCCTTTT   [869]
E.GRAC                      GGGGAGCAAAGATGATCAGACACCGTCGTAGTCCGGCCACTGTAAACGATGCCGGCCAGGCCTTGGCAGA-GCAA--GAATC------------------   [965]
Zea_mays                    GGGGCTCGAAGACGATCAGATACCGTCCTAGTCTCA--ACCATAAACGATGCCGACCAGGG-------------AT-CAGCG------------------   [654]
D._mobilis                  GGGGAGCGAACCGGATTAGATACCCGGGTAGTCCCG--GCTGTAAACGATGCGGGCTAGGT-------------GTTGGGTG------------------   [471]
S._solfataricus             GGGCAGCAAACGGGATTAGATACCCCGGTAGTCCCG--GCTGTAAACGATGCGGGCTAGGT-------------GTCGAGTA------------------   [469]
T._tenax                    GGGGAGCAAAGGGGATTAGATACCCCTGTAGTCCCG--GCCGTAAACGATGCGGGCTAGCT-------------GTCGGCCG------------------   [472]
M._vannielii                GGGGCGCGAACCGGATTAGATACCCGGGTAGTCCTG--GCCGTAAACTCTGCGAACTAGGT-------------GTCACCTG------------------   [472]
MB._formicicum              GGGGCGCGAACCGGATTAGATACCCGGGTAGTCCTG--GCCGTAAACGATGTGGACTTGGT-------------GTTGGGAT------------------   [474]
MS._hungatei                GGGGAGCAAACCGGATTAGATACCCGGGTAGTCCCA--GCTGTAAACGATGCGCGTTAGGT-------------GTGTCAGT------------------   [447]
H._volacanii                GGGTCTCGAACCGGATTAGATACCCGGGTAGTCCTA--GCTGTAAACGATGCTCGCTAGGT-------------GTGACACA------------------   [475]
HC._morrhuae                GGGTCTCGAACCGGATTAGATACCCGGGTAGTCCAA--GCTGTAAACGATGCTCGCTAGGT-------------GTGGCGTT------------------   [476]
H.HALO                      GGGTCTCGAACCGGATTAGATACCCGGGTAGTCCTA--GCTGTAAACGATGTCCGCTAGGT-------------GTGGCGCA------------------   [475]
H._cutirubrum               GGGTCTCGAACCGGATTAGATACCCGGGTAGTCCTA--GCTGTAAACGATGTCCGCTAGGT-------------GTGGCGCA------------------   [475]
AN._nidulans                GGGGAGCGAAAGGGATTAGATACCCCTGTAGTCCTA--GCCGTAAACGATGAACACTAGGT-------------GTTGCG-T------------------   [497]
HE.CHL                      GGGGAGCAAACAGGATTAGATACCCTGGTAGTCCAC--GCCGTAAACGATGAGTGCTAGGT-------------GTTGGG-G------------------   [481]
Bc._subtilis                GGGGAGCGAACAGGATTAGATACCCTGGTAGTCCAC--GCCGTAAACGATGAGTGCTAAGT-------------GTTAGG-G------------------   [520]
MY.CAP                      GGGGAGCAAATAGGATTAGATACCCTAGTAGTCCAC--GCCGTAAACGATGAGTACTAAGT-------------GTTGGG-G------------------   [516]
E._coli                     GGGGAGCAAACAGGATTAGATACCCTGGTAGTCCAC--GCCGTAAACGATGTCGACTTGGA-------------GGTTGT-G------------------   [518]
MYX.XA                      GGGGAGCAAACAGGATTAGATACCCTGGTAGTCCAC--GCCGTAAACGATGAGAACTAGGT-------------GTCGTG-G------------------   [517]
P.TEST                      GGGGAGCAAACAGGATTAGATACCCTGGTAGTCCAC--GCCCTAAACGATGTCAACTGGTT-------------GTTGGG-T------------------   [519]
AG.TUM                      GGGGAGCAAACAGGATTAGATACCCTGGTAGTCCAC--GCCGTAAACGATGAATGTTAGCC-------------GTCGGG-C------------------   [495]
DV.DES                      GGGGAGCAAACAGGATTAGATACCCTGGTAGTCCAC--GCTGTAAACGATGGATGCTAGAT-------------GTCGGG-G------------------   [519]
BA.FRG                      GGGTATCAAACAGGATTAGATACCCTGGTAGTCCAC--ACAGTAAACGATGAATACTCGCT-------------GTTTGC-G------------------   [516]
'Zea_mays_(chloroplast)'    GGGGAGCAAATGGGATTAGAGACCCCAGTAGTCCTA--GCCGTAAACGATGGATACTAGGT-------------GCTGTG-C------------------   [495]
T.AMIT                      GGGGAGCGAACAGGATTAGATACCCTGGTAGTCCAT--GCCGTAAACGATG---------A-------------GTGTTC-G------------------   [494]

[                                    1110      1120      1130      1140      1150      1160      1170      1180      1190      1200]
[                                    .         .         .         .         .         .         .         .         .         .]

Homo_sapiens                -----------------------------------------------------------------------------------------------GCGTT   [667]
Rattus_norvegicus           -----------------------------------------------------------------------------------------------GCGTT   [668]
Xenopus_laevis              -----------------------------------------------------------------------------------------------GCGTT   [663]
A._salina                   -----------------------------------------------------------------------------------------------ACGTT   [664]
S._cerevisiae               -----------------------------------------------------------------------------------------------GTGTT   [656]
P.MICA                      -----------------------------------------------------------------------------------------------TCGTT   [655]
D.DISC                      -----------------------------------------------------------------------------------------------AAATT   [658]
T.BRUC                      GTGCCGACCCTCGGCCCCAATTTATTTATCAATTTACGTGCCTATTCTATCACCCCCGGTTCCCTCTTTTGAGGTTCTTCCGGGGTTTTTTACGGGAATA   [969]
E.GRAC                      -----------------------------------------------------------------------------------------------CTAGA   [970]
Zea_mays                    -----------------------------------------------------------------------------------------------GTGTT   [659]
D._mobilis                  -----------------------------------------------------------------------------------------------GGCTT   [476]
S._solfataricus             -----------------------------------------------------------------------------------------------GGCTT   [474]
T._tenax                    -----------------------------------------------------------------------------------------------GGCTT   [477]
M._vannielii                -----------------------------------------------------------------------------------------------GGCCT   [477]
MB._formicicum              -----------------------------------------------------------------------------------------------GGCTC   [479]
MS._hungatei                -----------------------------------------------------------------------------------------------GACCA   [452]
H._volacanii                -----------------------------------------------------------------------------------------------GGCTA   [480]
HC._morrhuae                -----------------------------------------------------------------------------------------------GGCTA   [481]
H.HALO                      -----------------------------------------------------------------------------------------------GGCTA   [480]
H._cutirubrum               -----------------------------------------------------------------------------------------------GGCTA   [480]
AN._nidulans                -----------------------------------------------------------------------------------------------GAATC   [502]
HE.CHL                      -----------------------------------------------------------------------------------------------GTATC   [486]
Bc._subtilis                -----------------------------------------------------------------------------------------------GGTTT   [525]
MY.CAP                      -----------------------------------------------------------------------------------------------TAACT   [521]
E._coli                     -----------------------------------------------------------------------------------------------CCCTT   [523]
MYX.XA                      -----------------------------------------------------------------------------------------------GAGTT   [522]
P.TEST                      -----------------------------------------------------------------------------------------------CTTAA   [524]
AG.TUM                      -----------------------------------------------------------------------------------------------AGTAT   [500]
DV.DES                      -----------------------------------------------------------------------------------------------AGTAT   [524]
BA.FRG                      -----------------------------------------------------------------------------------------------ATATA   [521]
'Zea_mays_(chloroplast)'    -----------------------------------------------------------------------------------------------GACTC   [500]
T.AMIT                      -----------------------------------------------------------------------------------------------CCCTT   [499]

[                                    1210      1220      1230      1240      1250      1260      1270      1280      1290      1300]
[                                    .         .         .         .         .         .         .         .         .         .]

Homo_sapiens                ATTCCCATG--ACCC-GCCGGGCAGCTT----CCGGGAAA--CCA--AAGTCTTTGGGTTCCGGGGGGAGTATGGTTGCAAAGCTGAAACTTAAAGGAAT   [756]
Rattus_norvegicus           ATTCCCATG--ACCC-GCCGGGCAGCTT----CCGGGAAA--CCA--AAGTCTTTGGGTTCCGGGGGGAGTATGGTTGCAAAGCTGAAACTTAAAGGAAT   [757]
Xenopus_laevis              ATTCCCATG--ACCC-GCCGAGCAGCTT----CCGGGAAA--CCA--AAGTCTTTGGGTTCCGGGGGGAGTATGGTTGCAAAGCTGAAACTTAAAGGAAT   [752]
A._salina                   ACTTGAATG--ACTC-CGCGGGCAGCTT----CCGGGAAA--CCA--AAGTGTTTGGGTTCCGGGGGAAGTATGGTTGCAAAGCTGAAACTTAAAGGAAT   [753]
S._cerevisiae               TTTTTAATG--ACCC-ACTCGGTACCTT----ACGAGAAA--TCA--AAGTCTTTGGGTTCTGGGGGGAGTATGGTCGCAAGGCTGAAACTTAAAGGAAT   [745]
P.MICA                      ATCTATACG--ACTC-CTTCAGCACCTT----ATGAGAAA--TCA--AAGTCTTTGGGTTCCGGGGGGAGTATGGTCGCAAGGCTGAAACTTAAAGGAAT   [744]
D.DISC                      TTTTCAA-A--ATTT-AATCGGCACCTT----GTGAGAAA--TCAT-GAGTGTTTAGATTCCGGGGGGAGTATGGTCGCAAGTCTGAAACTTAAAGGAAT   [747]
T.BRUC                      TCCTCAGCA--CGTT-TCTTACTTCTTC----ACGCGAAAGCTTG--GAGGTTACAGTCTCAGGGGGGAGTACGTTCGCAAGAGTGAAACTTAAAGAAAT   [1060]
E.GRAC                      CTCTGTCAG--GGCC-ACTCCTCCCACA----ACGAGAAA-TCCA--CAGCCTGTGGGTTCAGGGGGGAGTACTGTCGCAAGGCTGAAACTTAAAGGAAT   [1060]
Zea_mays                    ACTAATAGG--ACCCCGCTGGCCACCTT----ATGAGAAA--TCA--AAGTCTTTGGGTTCCGGGGGGAGTATGGTCGCAGGGCTAAAACTTAAAGGAAT   [749]
D._mobilis                  ------AGA--GCCC-ACCCAGTGCCGC----A-GGGAAG--CCGTTAAGCCCGCCGCCT----GGGGAGTACGGCCGCAAGGCTGAAACTCAAAGGAAT   [556]
S._solfataricus             ------AGA--GCCT-ACTCGGTGCCGC----A-GGGAAG--CCGTTAAGCCCGCCGCCT----GGGGAGTACGGTCGCAAGACTGAAACTTAAAGGAAT   [554]
T._tenax                    ------AGG--GCCC-GGCCGGTGGCGT----A-GGGAAA--CCGTTAAGCCCGCCGCCT----GGGGAGTACGGCCGCAAGGCTGAAACTTAAAGGAAT   [557]
M._vannielii                ------CGA--GCCC-AGGTGGTGCCGA----A-GGGAAG--CCGTTAAGTTCGCCGCCT----GGGGAGTACGGTCGCAAGACTGAAACTTAAAGGAAT   [557]
MB._formicicum              ------CGA--GCTG-CCCCAGTGCCGA----A-GGGAAG--CTGTTAAGTCCACCGCCT----GGGAAGTACGGTCGCAAGACTGAAACTTAAAGGAAT   [559]
MS._hungatei                ------CGT--GTCA-CTGAGGTGCCGA----A-GGGAAA--CCGTGAAACGCGCCGCCT----GGGGAGTACGGTCGCAAGGCTGAAACTTAAAGGAAT   [532]
H._volacanii                ------CGA--GCCT-GTGTTGTGCCGT----A-GGGAAG--CCGAGAAGCGAGCCGCCT----GGGAAGTACGTCCGCAAGGATGAAACTTAAAGGAAT   [560]
HC._morrhuae                ------CGA--GCCA-GCGCTGTGCCGT----A-GGGAAG--CCGAGAAGCGAGCCGCCT----GGGAAGTACGTCCGCAAGGATGAAACTTAAAGGAAT   [561]
H.HALO                      ------CGA--GCCT-GCGCTGTGCCGT----A-GGGAAG--CCGAGAAGCGGACCGCCT----GGGAAGTACGTCTGCAAGGATGAAACTTAAAGGAAT   [560]
H._cutirubrum               ------CGA--GCCT-GCGCTGTGCCGT----A-GGGAAG--CCGAGAAGCGGACCGCCT----GGGAAGTACGTCTGCAAGGATGAAACTTAAAGGAAT   [560]
AN._nidulans                ------GAC--CCGC---GCAGTGCCGT----A-GCCAAC--GCGTTAAGTGTTCCGCCT----GGGGAGTACGCACGCAAGTTGGAAACTCAAAGGAAT   [580]
HE.CHL                      ------GAC--CCCC---CCGGTGCCGC----A-GTTCAC--GCAATAAGCACTCCGCCT----GGGGAGTACGGCCGCAAGGTTGAAACTCAAAGGAAT   [564]
Bc._subtilis                ------CCG--CCCC---TTAGTGCTGC----A-GCTAAC--GCATTAAGCACTCCGCCT----GGGGAGTACGGTCGCAAGACTGAAACTCAAAGGAAT   [603]
MY.CAP                      ------C-------------AGCGCTGC----A-GCTAAC--GCATTAAGTACTCCGCCT----GAGTAGTATGCTCGCAAGAGTGAAACTCAAAGGAAT   [591]
E._coli                     ------GAG--GCG----TGGCTTCCGG----A-GCTAAC--GCGTTAAGTCGACCGCCT----GGGGAGTACGGCCGCAAGGTTAAAACTCAAATGAAT   [600]
MYX.XA                      ------GAC--CCCC---GCGGTGCCGA----A-GCTAAC--GCATTAAGTTCTCCGCCT----GGGAAGTACGGTCGCAAGACTAAAACTCAAAGGAAT   [600]
P.TEST                      ------CTG--ACTC-----AGTAACGA----A-GCTAAC--GCGTGAAGTTGACCGCCT----GGGGAGTACGGCCGCAAGGTTGAAACTCAAAGGAAT   [600]
AG.TUM                      --------A--CTGT---TCGGTGGCGC----A-GCTAAC--GCATTAAACATTCCGCCT----GGGGAGTACGGTCGCAAGATTAAAACTCAAAGGAAT   [576]
DV.DES                      ------TC------T---TCGGTGTCGT----A-GTTAAC--GCGTTAAGCATCCCGCCT----GGGGAGTACGGTCGCAAGGCTGAAACTCAAAGAAAT   [598]
BA.FRG                      ------CAG---------TAAGCGGCCA----A-GCGAAA--GCATTAAGTATTCCACCT----GGGGAGTACGCCGGCAACGGTGAAACTCAAAGGAAT   [595]
'Zea_mays_(chloroplast)'    ------GAC--CCGT---GCAGTGCTGT----A-GCTAAC--GCGTTAAGTATCCCGCCT----GGGGAGTACGTTCGCAAGAATGAAACTCAAAGGAAT   [578]
T.AMIT                      ------GGTCTACG----CGGATCAGGGGCCCA-GCTAAC--GCGTGAAACACTCCGCCT----GGGGAGTACGGTCGCAAGACCGAAACTCAAAGGAAT   [582]

[                                    1310      1320      1330      1340      1350      1360      1370      1380      1390      1400]
[                                    .         .         .         .         .         .         .         .         .         .]

Homo_sapiens                TGACGGAAGGGCACCACCAGGAGTGGAGCCTGCGGCTTAATTTGACTCAACACGGGAAACCTCACCCGGCCCGGACA----------------CGG-A-C   [838]
Rattus_norvegicus           TGACGGAAGGGCACCACCAGGAGTGGAGCCTGCGGCTTAATTTGACTCAACACGGGAAACCTCACCCGGCCCGGACA----------------CGG-A-C   [839]
Xenopus_laevis              TGACGGAAGGGCACCACCAGGAGTGGAGCCTGCGGCTTAATTTGACTCAACACGGGAAACCTCACCCGGCCCGGACA----------------CGG-A-A   [834]
A._salina                   TGACGGAAGGGCACCACCAGGAGTGGAGCCTGCGGCTTAATTTGACTCAACACGGGAAACCTCACCAGGCCCGGACA----------------CTG-G-A   [835]
S._cerevisiae               TGACGGAAGGGCACCACTAGGAGTGGAGCCTGCGGCT-AATTTGACTCAACACGGGGAAACTCACCAGGTCCAGACA----------------CAA-T-A   [826]
P.MICA                      TGACGGAAGGGCACCACCAGGAGTGGAGCCTGCGGCTTAATTTGACTCAACACGGGGAAACTTACCAGGTCCAGACA----------------TAG-T-A   [826]
D.DISC                      TGACGGAAGGGCACACAATGGAGTGGAGCCTGCGGCTTAATTTGACTCAACTCGGGAAAACTTACCAAGCTAAGATA----------------TAG-T-A   [829]
T.BRUC                      TGACGGAATGGCACCACAAGACGTGGAGCGTGCGGTTTAATTTGACTCAACACGGGGAACTTTACCAGATCCGGACA----------------GGG-T-G   [1142]
E.GRAC                      TGACGGAATGGCACCACAAGGCGTGGAGTATGCGGCTTAATTTGACTCAACGCGGGGAATGTTACCAGGTCAGGACG----------------CAA-C-T   [1142]
Zea_mays                    TGACGGAAGGGCACCACCAGGCGTGGAGCCTGCGGCTTAATTTGACTCAACACGGGGAAACTTACCAGGTCCAGACA----------------TAG-C-A   [831]
D._mobilis                  TGGCGGGGGAGCACCACAAGGGGTGGAGCCTGCGGTTCAATTGGAGTCAACGCCGGGAATCTCACCGGGGGA-GACA----------------GCA-G-G   [637]
S._solfataricus             TGGCGGGGGAGCACCACAAGGGGTGGAACCTGCGGCTCAATTGGAGTCAACGCCTGGAATCTTACCGGGGGA-GACC----------------GCA-G-T   [635]
T._tenax                    TGGCGGGGGGGCACCACAAGGGGTGAAGCTTGCGGCTTAATTGGAGTCAACGCCGGAAACCTTACCCGGGGC-GACA----------------GCA-G-G   [638]
M._vannielii                TGGCGGGGGAGCACCACAACGGGTGGAGCCTGCGGTTTAATTGGATTCAACGCCGGGCATCTCACCAGGAGC-GACA----------------GCA-T-G   [638]
MB._formicicum              TGGCGGGGGAGCACCACAACGCGTGGAGCCTGCGGTTTAATTGGATTCAACGCCGGACATCTCACCAGGGGC-GACA----------------GCA-G-A   [640]
MS._hungatei                TGGCGGGGGAGCACCACAACGGGTGGAGCCTGCGGTTTAATCGGACTCAACGCCGGAAATCTCACCGGATAA-GACA----------------GCT-G-A   [613]
H._volacanii                TGGCGGGGGAGCACTACAACCGGAGGAGCCTGCGGTTTAATTGGACTCAACGCCGGACATCTCACCAGCTCC-GACT----------------ACA-GTG   [642]
HC._morrhuae                TGGCGGGGGAGCACTACAACCGGAGGAGCCTGCGGTTTAATTGGACTCAACGCCGGACATCTCTCCGGCACC-GACA----------------GTGTGCA   [644]
H.HALO                      TGGCGGGGGAGCACTACAACCGGAGGAGCCTGCGGTTTAATTGGACTCAACGCCGGACATCTCACCAGCCCC-GACA----------------GTA-GTA   [642]
H._cutirubrum               TGGCGGGGGAGCACTACAACCGGAGGAGCCTGCGGTTTAATTGGACTCAACGCCGGACATCTCACCAGCCCC-GACA----------------GTA-GTA   [642]
AN._nidulans                TGACGGGGGCCCGC-ACAAGCGGTGGAGTATGTGGTTTAATTCGATGCAACGCGAAGAACCTTACCAGGGTTTGACAT-----CC----CCCGAAT-C-T   [668]
HE.CHL                      TGACGGGGGCCCGC-ACAAGCGTTGGAGCATGTGGTTTAATTCGACGCAACGCGAAGAACCTTACCAAGGCTTGACAT-----CC----TCTGAAT-C-C   [652]
Bc._subtilis                TGACGGGGGCCCGC-ACAAGCGGTGGAGCATGTGGTTTAATTCGAAGCAACGCGAAGAACCTTACCAGGTCTTGACAT-----CC----TCTGACA-A-T   [691]
MY.CAP                      TGACGGGGACCCGC-ACAAGTGGTGGAGCATGTGGTTTAATTCGAAGCAACACGAAGAACCTTACCAGGGCTTGACAT-----CC----AGTGTAA-A-G   [679]
E._coli                     TGACGGGGGCCCGC-ACAAGCGGTGGAGCATGTGGTTTAATTCGATGCAACGCGAAGAACCTTACCTGGTCTTGACAT-----CC----ACGGAAG-T-T   [688]
MYX.XA                      TGACGGGGGCCCGC-ACAAGCGGTGGAGCATGTGGTTTAATTCGACGCAACGCGCAGAACCTTACCTGGTCTTGACAT-----CC----TCAGAAT-C-C   [688]
P.TEST                      TGACGGGGACCCGC-ACAAGCGGTGGATGATGTGGTTTAATTCGATGCAACGCGAAAAACCTTACCCACCTTTGACAT-----GG----CAGGAAC-T-T   [688]
AG.TUM                      TGACGGGGGCCCGC-ACAAGCGGTGGAGCATGTGGTTTAATTCGAAGCAACGCGCAGAACCTTACCAGCTCTTGACAT-----TCGGGGTTTGGGC-A-G   [668]
DV.DES                      TGACGGGGGCCCGC-ACAAGCGGTGGAGTATGTGGTTTAATTCGATGCAACGCGAAGAACCTTACCTAGGTTTGACAT-----CC---ACGGAACC-C-T   [687]
BA.FRG                      TGACGGGGGCCCGC-ACAAGCGGAGGAACATGTGGTTTAATTCGATGATACGCGAGGAACCTTACCCGGGCTTAAATT-----GC----AGTGGAA-T-G   [683]
'Zea_mays_(chloroplast)'    TGACGGGGGCCCGC-ACAAGCGGTGGAGCATGTGGTTTAATTCGATGCAAGGCGAAGAACCTTACCAGGGCTTGACAT-----GC----CGCGAAT-C-C   [666]
T.AMIT                      TGACGGGGGCCTGC-ACAAGCGGTGGAGCATGTGGTTTAATTCGATACAACGCGCAAAACCTTACCAGCCCTTGACATATGAACA----ACAAAAC-C-T   [675]

[                                    1410      1420      1430      1440      1450      1460      1470      1480      1490      1500]
[                                    .         .         .         .         .         .         .         .         .         .]

Homo_sapiens                AG-GATTGACA--G-ATTGA--TAGCTCTTTCTC-GATTC--CGTGGGTGGTGGTGCATGGCCGTT-CTTAGTTGGTGGAGCGATTTGTCTGGTTAATTC   [928]
Rattus_norvegicus           AG-GATTGACA--G-GTTGA--TAGCTCTTTCTC-GATTC--CGTGGGTGGTGGTGCATGGCCGTT-CTTAGTTGGTGGAGCGATTTGTCTGGTTAATTC   [929]
Xenopus_laevis              AG-GATTGACA--G-ATTGA--TAGCTCTTTCTC-GATTC--TGTGGGTGGTGGTGCATGGCCGTT-CTTAGTTGGTGGAGCGATTTGTCTGGTTAATTC   [924]
A._salina                   AG-GATTGACA--G-ATTGA--GAGCTCTTTCTT-GATTC--AGTGGGTGGTGGTGCATGGCCGTT-CTTAGTTGGTGGAGCGATTTGTCTGGTTAATTC   [925]
S._cerevisiae               AG-GATTGACA--G-ATTGA--GAGCTCTTTCTT-GATTT--TGTGGGTGGTGGTGCATGGCCGTTTCTCAGTTGGTGGAGTGATTTGTCTGCTTAATTG   [917]
P.MICA                      AG-GATTGACA--G-ATTGA--TAGCTCTTTCTT-GATTC--TATGGGTGGTGGTGCATGGCCGTT-CTTAGTTGGTGGAGTGATTTGTCTGGTTAATTC   [916]
D.DISC                      AG-GATTGACA--G-ACTAA--AAGATCTTTCAT-GATTC--TATAAGTGGTGGTGCATGGTCGTT-CTTAGTTGGTGGAGCGATTTGTCTGGTCAATTC   [919]
T.BRUC                      AG-GATTGACA--G-ATGGA--GTGTTCTTTCTC-GATCC--CCTGAATGGTGGTGCATGGCCGCTTTT-GGTCGGTGGAGTGATTTGTTTGGTTGATTC   [1232]
E.GRAC                      GG-GATTGACA--G-ATTGA--GAGCTCTTTCTT-GATCT--TGTGGACGGTGGTGCATGGCCGCTCCTGA-TTGGTGGAGTGATTTGTCTGGTTGATTC   [1232]
Zea_mays                    AG-GATTGACA--G-ACTGA--GAGCTCTTTCTT-GATTC--TATGGGTGGTGGTGCATGGTCGTT-CTTAGTTGGTGGAGCGATTTGTCTGGTTAATTC   [921]
D._mobilis                  AT-GACGGCCA--G-GTTAA--AG-C-CTTGCCT-GACGC--GCTGAGAGGAGGTGCATGGCCGTC-GCCAGCTCGTGCTGTGAAGTGTCCGGTTAAGTC   [725]
S._solfataricus             AT-GACGGCCA--G-GCTAA--CGAC-CTTGCCT-GACTC--GCGGAGAGGAGGTGCATGGCCGTC-GCCAGCTCGTGTTGTGAAATGTCCGGTTAAGTC   [724]
T._tenax                    AT-GAAGGCCA--G-GCTAA--CGAC-CTTGCCG-GACGA--GCTGAGAGGAGGTGCATGGCCGTC-GTCAGCTCGTGCCGTGAGGTGTCCGGTTAAGTC   [727]
M._vannielii                AT-GACGGCCA--G-GTTGA--CGAC-CTTGCCT-GAAGC--GCTGAGAGGTGGTGCATGGCCATC-GTCAGCTCGTACCGCGAGGCGTCCTGTTAAGTC   [727]
MB._formicicum              AT-GATAGCCA--G-GTTGA--TGAC-CTTGCTT-GACAA--GCTGAGAGGAGGTGCATGGCCGCC-GTCAGCTCGTACCGTGAGGCGTCCTGTTAAGTC   [729]
MS._hungatei                AT-GATAGTCG--G-GATGA--AGAC-TCTACTT-GACTA--GCTGAGAGGAGGTGCATGGCCGTC-GTCAGTTCGTACTGTGAAGCATCCTGTTTAGTC   [702]
H._volacanii                AT-GACGATCA--G-GTTGA--TGAC-CTTATCA-CGACGCTGTAGAGAGGAGGTGCATGGCCGCC-GTCAGCTCGTACCGTGAGGCGTCCTGTTAAGTC   [733]
HC._morrhuae                GT-GACAGTCA--G-TCCGA--TGGG-CTTACTT-GA--GCCACTGAGAGGAGGTGCATGGCCGCC-GTCAGCTCGTACCGTGAGGCGTCCTGTTAAGTC   [733]
H.HALO                      AT-GACGGTCA--G-GTTGA--TGAC-CTTACCC-G-AGGCTACTGAGAGGAGGTGCATGGCCGCC-GTCAGCTCGTACCGTGAGGCGTCCTGTTAAGTC   [732]
H._cutirubrum               AT-GACGGTCA--G-GTTGA--TGAC-CTTACCC-GGAGGCTACTGAGAGGAGGTGCATGGCCGCC-GTCAGCTCGTACCGTGAGGCGTCCTGTTAAGTC   [733]
AN._nidulans                CT-TGGAAACG--A-GAGAG--TGCC-TTCGGGA-GCGGG--G-AGACAGGTGGTGCATGGCTGTC-GTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTC   [756]
HE.CHL                      GA-TAGAGATA--GCGGAGT--GCCC-TTCGGGGAGCAGA--G-AGACAGGTGGTGCATGGTTGTC-GTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTC   [742]
Bc._subtilis                CC-TAGAGATA--G-GACGT--CCCC-TTCGGGG-GCAGA--G-TGACAGGTGGTGCATGGTTGTC-GTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTC   [779]
MY.CAP                      CTATAGAGATA--T-AGTAG--AGGT-T-----A-ACATT--G-AGACAGGTGGTGCATGGTTGTC-GTCAGTTCGTGCCGTGAGGTGTTGGGTTAAGTC   [763]
E._coli                     TT-CAGAGATG--A-GAATG--TGCC-TTCGGGA-ACCGT--G-AGACAGGTGCTGCATGGCTGTC-GTCAGCTCGTGTTGTGAAATGTTGGGTTAAGTC   [776]
MYX.XA                      TT-CAGAGATGAGG-GAGTG--CCCG-CAAGGGA-ACTGA--G-AGACAGGTGCTGCATGGCTGTC-GTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTC   [778]
P.TEST                      AC-CAGAGATG--G-TTTGGTGCTCG-AAAGAGA-ACCTG--C-ACACAGGTGCTGCATGGCTGTC-GTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTC   [778]
AG.TUM                      TG-GAGACATT--G-TCCTT--CAGT-TAGGCTG-GCCCC--A-GAACAGGTGCTGCATGGCTGTC-GTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTC   [756]
DV.DES                      CC-CGAAAAGG--A-GGGGT--GCCC-TTCGGGGAGCCGT--G-AGACAGGTGCTGCATGGCTGTC-GTCAGCTCGTGTCGTGAGATGTTGGGTTAAGTC   [776]
BA.FRG                      ATGTGGAAACA--T-GTCAG--TGAG-CAATCAC--CGCT--G-TGA-AGGTGCTGCATGGTTGTC-GTCAGCTCGTGCCGTGAGGTGTCGGCTTAAGTG   [770]
'Zea_mays_(chloroplast)'    TC-TTGAAAGA--G-AGGGG--TGCC-CTCGGGA-ACGCG--G-ACACAGGTGGTGCATGGCTGTC-GTCAGCTCGTGCCGTAAGGTGTTGGGTTAAGTC   [754]
T.AMIT                      GT-CCTTAACA--G-GATGG--TACT-------G-ACTTT--C-ATACAGGTGCTGCATGGCTGTC-GTCAGCTCGTGTCGTGAGATGTTTGGTCAAGTC   [757]

[                                    1510      1520      1530      1540      1550      1560      1570      1580      1590      1600]
[                                    .         .         .         .         .         .         .         .         .         .]

Homo_sapiens                CGATAACGAACGAGACTCTGGCATGCTAA-CTAGTT-AC--G--------------------------------------C-GACC----------CCCG   [975]
Rattus_norvegicus           CGATAACGAACGAGACTCTGGCATGCTAA-CTAGTT-AC--G--------------------------------------C-GACC----------CC-G   [975]
Xenopus_laevis              CGATAACGAACGAGACTCCTCCATGCTAA-CTAGTT-AC--G--------------------------------------C-GACC----------CC-C   [970]
A._salina                   CGATAACGAACGAGACTCTAGCCTGCTAA-ATAG-A-CG--ATGGATC--------------------------------C-TAGT----------GG-T   [976]
S._cerevisiae               CGATAACGAACGAGACCTTAACCTACTAA-ATAGTG-GT--G--------------------------------------C-TAGC----------AT-T   [963]
P.MICA                      CGTTAACGAACGAGACCTTAACCTGCTAA-ATAGTT-AC--A--------------------------------------CGTAAC----------TC-C   [963]
D.DISC                      CGATAACGGACGAGACCTCGACCTGCTAA-CTAGTA-GT--ATTTATTAGTCGATATAGACGATAGCTTTTCTGGGGTTTG-GAAT----------GA-T   [1003]
T.BRUC                      CGTCAACGGACGAGATCC-AAGCTGCCCA-GTAG---GT--G--------------------------------------C-CGGG----------AT-T   [1275]
E.GRAC                      CGATAACGAGTGAGACATCTGCCTCCCACTAGCCTG-AG--G--------------------------------------C-TCGC----------AT-T   [1279]
Zea_mays                    CGTTAACGAACGAGACCTCAGCCTGCTAA-CTAGCT-AT--G--------------------------------------C-GGAG----------CC-A   [967]
D._mobilis                  CGGAAACGAGCGAGACCCCCACCC-CTAG-TTGCTA-CC--C-----------------------------------------GGG----------GC-T   [768]
S._solfataricus             CGGCAACGAGCGAGACCCCCACCC-CTAG-TTGGTA-TT--C-----------------------------------------TGG----------AC-T   [767]
T._tenax                    CGGCAACGAGCGAGACCCCCACCC-CTAG-TTGCTA-CC--C-----------------------------------------CGC----------TC-T   [770]
M._vannielii                AGGTAACGAGCGAGACCCGTGCCC-TATG-TTGCGA-CT--A-----------------------------------------CTT----------TC-T   [770]
MB._formicicum              AGGCAACGAGCGAGACCCACGCCC-TTAG-TTACCA-GC--G-----------------------------------------GAT----------CC-T   [772]
MS._hungatei                AGGCAACGAGCGAGACCCACGCGA-GCAG-TTGCCAGCT--T-----------------------------------------GAC----------CT-T   [746]
H._volacanii                AGGCAACGAGCGAGACCCGCACTT-CTAA-TTGCCA-GCAGC-----------------------------------------CAG----------T--T   [777]
HC._morrhuae                AGGCAACGAGCGAGACCCGCGTCC-CTAA-TTGCCA-GCAGC-----------------------------------------CAG----------CC-T   [778]
H.HALO                      AGGCAACGAGCGAGACCCGCACTC-CTAA-TTGCCA-GCGGT-----------------------------------------TAC----------CC-T   [777]
H._cutirubrum               AGGCAACGAGCGAGACCCGCACTC-CTAA-TTGCCA-GCAGT-----------------------------------------TAC----------CC-T   [778]
AN._nidulans                CCGCAACGAGCGCAACCCACGTTT-TTAG-TTGCCA-TC--A-----------------------------------------TTC----------AG-T   [799]
HE.CHL                      CCGCAACGAGCGCAACCCTTATCC-CTAG-TTGCCA-GCG-A-----------------------------------------GAG----------AG-T   [786]
Bc._subtilis                CCGCAACGAGCGCAACCCTTGATC-TTAG-TTGCCA-GC--A-----------------------------------------TTC----------AG-T   [822]
MY.CAP                      CCGCAACGAACGCAACCCTTGTCG-TTAG-TTACTA-AC--A-----------------------------------------TTA----------AG-T   [806]
E._coli                     CCGCAACGAGCGCAACCCTTATCC-TTTG-TTGCCA-GC--G-G---------------------------------------TCC----------GG-C   [820]
MYX.XA                      CCGCAACGAGCGCAACCCTCGCCT-TTAG-TTGCCA-----------------------------------------------CGC----------AA-G   [818]
P.TEST                      CCGCAACGAGCGCAACCCTTGCCA-TTAG-TTGCTA--C--A-----------------------------------------TTC----------AG-T   [820]
AG.TUM                      CCGCAACGAGCGCAACCCTCGCCC-TTAG-TTGCCA-GC--A-----------------------------------------TTT----------AG-T   [799]
DV.DES                      CCGCAACGAGCGCAACCCCTATGG-ATAG-TTGCCA-GC--AAG---------------------------------------TAA----------TG-T   [821]
BA.FRG                      CCATAACGAGCGCAACCCTTATCT-TTAG-TTACTA-AC--AGG---------------------------------------TTA----------TG-C   [815]
'Zea_mays_(chloroplast)'    TCGCAACGAGCGCAACCCTCGTGT-TTAG-TTGCCA-CT--A------------------------------------------TG----------AG-T   [796]
T.AMIT                      CTATAACGAGCGAAACCCTCGTTT-TGTG-TTGCTG-AG--A-C---------------------------------------ATGCGC????GTGCG-T   [811]

[                                    1610      1620      1630      1640      1650      1660      1670      1680      1690      1700]
[                                    .         .         .         .         .         .         .         .         .         .]

Homo_sapiens                AGCGGTCGGCGT---------------------------------------------------------------------------CCCCC--------   [992]
Rattus_norvegicus           AGCGCTCGGCGT---------------------------------------------------------------------------CCCCC--------   [992]
Xenopus_laevis              GGCGGTCGGCGT---------------------------------------------------------------------------CCA----------   [985]
A._salina                   GG-----ATCGC---------------------------------------------------------------------------T------------   [984]
S._cerevisiae               TG---CTGGTTA---------------------------------------------------------------------------TCC----------   [975]
P.MICA                      GG---TTACGTG---------------------------------------------------------------------------GGC----------   [975]
D.DISC                      TTCGGTCATCTC---------------------------------------------------------------------------CTGCTTCAAGGAG   [1028]
T.BRUC                      GT---CCACACA----------GGACAGCAGTCCCTCCGGC-----GGGGATTTTTTCCCCAACG-GTGGTCGTCATCCTTCTTTTTACA----------   [1346]
E.GRAC                      TG---GTAGGGTTCGGCTGCTCGG-TGGCAGCCCC-CTGGCAACAGGGGGAGATGTACCGGTGCATGCTCCCGAGAGCCTCCAGT--TCA----------   [1362]
Zea_mays                    TC---CCGCTAG---------------------------------------------------------------------------TTA----------   [979]
D._mobilis                  AC---GGCTCCG---------------------------------------------------------------------------GGG----------   [780]
S._solfataricus             CC---CGGTCCA---------------------------------------------------------------------------GAA----------   [779]
T._tenax                    TC---GGGGCGG---------------------------------------------------------------------------GGG----------   [782]
M._vannielii                CC---GGAA-GG---------------------------------------------------------------------------TAA----------   [781]
MB._formicicum              TC---GGGATGC---------------------------------------------------------------------------CGG----------   [784]
MS._hungatei                CG---GGTT-GA---------------------------------------------------------------------------TGG----------   [757]
H._volacanii                TC---GACTGGC---------------------------------------------------------------------------TGG----------   [789]
HC._morrhuae                TG---TGCTGGC---------------------------------------------------------------------------TGG----------   [790]
H.HALO                      TT---GGGTAGC---------------------------------------------------------------------------TGG----------   [789]
H._cutirubrum               TT---GGGTAGC---------------------------------------------------------------------------TGG----------   [790]
AN._nidulans                T---------------------------------------------------------------------------------------GG----------   [802]
HE.CHL                      C---------------------------------------------------------------------------------------GG----------   [789]
Bc._subtilis                T---------------------------------------------------------------------------------------GG----------   [825]
MY.CAP                      T---------------------------------------------------------------------------------------GA----------   [809]
E._coli                     C---------------------------------------------------------------------------------------GG----------   [823]
MYX.XA                      T---------------------------------------------------------------------------------------GG----------   [821]
P.TEST                      T---------------------------------------------------------------------------------------GA----------   [823]
AG.TUM                      T---------------------------------------------------------------------------------------GG----------   [802]
DV.DES                      T---------------------------------------------------------------------------------------GG----------   [824]
BA.FRG                      T---------------------------------------------------------------------------------------GA----------   [818]
'Zea_mays_(chloroplast)'    T---------------------------------------------------------------------------------------TG----------   [799]
T.AMIT                      G---------------------------------------------------------------------------------------CC----------   [814]

[                                    1710      1720      1730      1740      1750      1760      1770      1780      1790      1800]
[                                    .         .         .         .         .         .         .         .         .         .]

Homo_sapiens                -------------------------------AA----CTTCTTAGAGGGACAAG---TGG--CG-TT-CAGCCA---CCCGAGATTGA-GCAATAACAGG   [1046]
Rattus_norvegicus           -------------------------------AA----CTTCTTAGAGGGACAAG---TGG--CG-TT-CAGCCA---CC-GAGATTGA-GCAATAACAGG   [1045]
Xenopus_laevis              --------------------------------A----CTTCTTAGAGGGACAAG---TGG--CG-TT-CAGCCA--CAC-GAGATCGA-GCAATAACAGG   [1038]
A._salina                   -------------------------------------CTTCTTAGAGGGACAAG---TGG--CG-TC-TAGCCA--TAT-GAGAGTGA-GCAATAACAGG   [1036]
S._cerevisiae               --------------------------------A----CTTCTTAGAGGGACTAT---CGG--TT-TC-AAGCCG-ATGG-AAGTTTGAGGCAATAACAGG   [1030]
P.MICA                      --------------------------------A----ACTTTTAGAGGGACTTT---GCG--TG-TC-TAACGC-AAGG-AAGTTTGAGGCAATAACAGG   [1030]
D.DISC                      TGTGTAGTCTGACTCGATAGGTACGAATTAAAA----CTTCTTAGAGGGACTAC---CTG--CC-TC-AAGCAG-GCGG-AAGTCCGAGGCAATAACAGG   [1115]
T.BRUC                      --------------------------------GGCCCCTTCTCTGCGGGATTCC---TTGCTTT-TC-GCGCAA-GGTG-AGATTTTGGGCAACAGCAGG   [1407]
E.GRAC                      --------------------------------G----CTTCTCTGAGGTGCTGTGTCCGC--CA-CA-AAGGGC-ATGC-ATGCTAGAGCCAACAGCAGG   [1420]
Zea_mays                    --------------------------------G----CTTCTTAGAGGGACTAT---GGC--CG-TT-TAGGCC-G-CG-AAGTTTGAGGCAATAACAGG   [1033]
D._mobilis                  -------------------------------------CACACTAGGGGGACTGC---CGC--CG-TTTAAGGCG-GAGG-AAGGAGGGGGCCACGGCAGG   [835]
S._solfataricus             --------------------------------C----CACACTAGGGGGACTGC---CGG--CG-T--AAGCCG-GAGG-AAGGAGGGGGCCACGGCAGG   [833]
T._tenax                    --------------------------------G----CACACTAGGGGGACTGC---CGG--CG-T--AAGCCG-GAGG-AAGGAGGGGGCGACGGCAGG   [836]
M._vannielii                --------------------------------G----CACTCATAGGGGACCGC---TAG--CGCT--AAGCTA-GAGG-AAGGAGCGGGCAACGATAGG   [836]
MB._formicicum              --------------------------------G----CACACTAAGGGGACCGC---CAG--TGAT--AAACTG-GAGG-AAGGAGTGGACGACGGTAGG   [839]
MS._hungatei                --------------------------------G----GACACTGCTCGGACCGC---CTC--TGCT--AAAGGG-GAGG-AAGGAATGGGCAACGGTAGG   [812]
H._volacanii                --------------------------------G----TACATTAGAAGGACTGC---CGC--TG-CT-AAAGCG-GAGG-AAGGAACGGGCAACGGTAGG   [844]
HC._morrhuae                --------------------------------G----TACATTAGGGAGACTGC---CGT--CG-CT-AAGACG-GAGG-AAGGAACGGGCAACGGTAGG   [845]
H.HALO                      --------------------------------G----TACATTAGGTGGACTGC---CGC--TG-CC-AAAGCG-GAGG-AAGGAACGGGCAACGGTAGG   [844]
H._cutirubrum               --------------------------------G----TACATTAGGTGGACTGC---CGC--TG-CC-AAAGCG-GAGG-AAGGAACGGGCAACGGTAGG   [845]
AN._nidulans                --------------------------------G----CACTCTAGAGAAACTGC---CGG--TGAC--AAACCG-GAGG-AAGGTGTGGACGACGTCAAG   [857]
HE.CHL                      --------------------------------G----GACTCTAGGGAGACTGC---CCG--GGAC--GACCGG-GAGG-AAGGCGGGGATGACGTCAAA   [844]
Bc._subtilis                --------------------------------G----CACTCTAAGGTGACTGC---CGG--TGAC--AAACCG-GAGG-AAGGTGGGGATGACGTCAAA   [880]
MY.CAP                      --------------------------------G----AACTCTAACGAGACTGC---TAG--TG-T--AAGCTA-GAGG-AAGGTGGGGATGACGTCAAA   [863]
E._coli                     --------------------------------G----AACTCAAAGGAGACTGC---CAG--TGAT--AAACTG-GAGG-AAGGTGGGGATGACGTCAAG   [878]
MYX.XA                      --------------------------------A----T-CTCTAGAGGGACTGC---CGG--TGTT--AAACCG-GAGG-AAGGTGGGGATGACGTCAAG   [875]
P.TEST                      --------------------------------G----CACTCTAATGGGACTGC---CGG--TGAC--AAACCG-GAGG-AAGGTGGGGATGACGTCAAG   [878]
AG.TUM                      --------------------------------G----CACTCTAAGGGGACTGC---CGG--TGAT--AAGCCGAGAGG-AAGGTGGGGATGACGTCAAG   [858]
DV.DES                      --------------------------------G----CACTCTATTCAGACTGC---CCG--GGTT--AACCGG-GAGG-AAGGTGGGGACGACGTCAAG   [879]
BA.FRG                      --------------------------------G----GACTCTAGAGAGACTGC---CGT--CGTA--AGATGT-GAGG-AAGGTGGGGATGACGTCAAA   [873]
'Zea_mays_(chloroplast)'    --------------------------------G----AACCCTGAACAGACCGC---CGG--TGTT--AAGCCG-GAGG-AAGGAGAGGATGAGGCCAAG   [854]
T.AMIT                      --------------------------------G----CACTCACGAGGGACTGC---CAG--TGAG--ATACTG-GAGG-AAGGTGGGGATGACGTCAAG   [869]

[                                    1810      1820      1830      1840      1850      1860      1870      1880      1890      1900]
[                                    .         .         .         .         .         .         .         .         .         .]

Homo_sapiens                TCTGTGATGCCCTTAGA-TGTCCGGGGCTGCACGCGCGCTACACTGACTGGCTCAGCGTG-TGCCTA------------------------CCCTACGCC   [1120]
Rattus_norvegicus           TCTGTGATGCCCTTAGA-TGTCCGGGGCTGCACGCGCGCTACACTGACTGGCTCAGCGTG-TGCCTA------------------------CCCTACGCC   [1119]
Xenopus_laevis              TCTGTGATGCCCTTAGA-TGTCCGGGGCTGCACGCGCGCTACACTGAACGGATCAGCGTG-TGTCTA------------------------CCCTGCGCC   [1112]
A._salina                   TCTGTGATGCCCTTAGA-TGTCCTGGGCCGCACGCGCGCTACACTGGAAGAATCAGCGCG-T--CC-------------------------TCCCTGTCC   [1107]
S._cerevisiae               TCTGTGATGCCCTTAGAACGTTCTGGGCCGCACGCGCGCTACACTGACGGAGCCAGCGAG-T--CTA------------------------ACCTTGGCC   [1103]
P.MICA                      TCTGTGATGCCCTTAGA-TGTTCTGGGCTGCACGCGCGCTACACTGATGCGTTCAACGAG-T--TTA----------------------TGCACTTGCCC   [1104]
D.DISC                      TCTGTGATGCCCTTAGA-TACCTTGGGCCGCACGCGCGCTACAATGTAGGAAACAAAAAG-G--CT--------------------------CCTGGTCC   [1185]
T.BRUC                      TCTGTGATGCTCCTCAA-TGTTCTGGGCGACACGCGCACTACAATGTCAGTGAGAACAAG-AGTCCGAGCGGCACTTCACAATGTCGCTCCCGCTTGATC   [1505]
E.GRAC                      TCTGTGATGCTCCCAGA-TGTCCTGGGCCGCACGCGCACTACATTGTCACAGTGAAGGTG-T--CGA-------CATGCCCACTCCGGTGGGCCCTGGCC   [1509]
Zea_mays                    TCTGTGATGCCCTTAGA-TGTTCTGGGCCGCACGCGCGCTACACTGATGTATCCAACGAG-TATATA------------------------GCCTTGGCC   [1107]
D._mobilis                  TCAGC-ATGCCCCGAAC--CCCCCGGGCTACACGCGGGCTACAATGGCGGGGACAGCGGGAT--CCG------------------------ACC----CC   [902]
S._solfataricus             TCAGC-ATGCCCCGAAA--CTCCCGGGCCGCACGCGGGTTACAATGGCAGGGACAACGGGAT--GCT------------------------ACC----TC   [900]
T._tenax                    TCAGT-ATGCCCCGAAA--CCCCGGGGCTGCACGCGAGCTGCAATGGCGGGGACAGCGGGAT--CCG------------------------ACC----CC   [903]
M._vannielii                TCCGC-ATGCCCCGAAT--CTCCTGGGCTACACGCGGGCTACAATGGCTAGGACAATGGGCT--GCT------------------------ACC----CT   [903]
MB._formicicum              TCCGT-ATGCCCCGAAT--CCCCTGGGCTACACGCGGGCTACAATGGTTAGGACAATGGGTT--CCG------------------------ACA----CT   [906]
MS._hungatei                TCAGC-ATGCCCCGAAT--TATCCGGGCTACACGCGGGCTACAATGGACAGGACAATGGGTT--TCG------------------------ACA----CC   [879]
H._volacanii                TCAGT-ATGCCCCGAAT--GAGCTGGGCTACACGCGGGCTACAATGGTCGAGACAATGGGTT--GCT------------------------ATC----TC   [911]
HC._morrhuae                TCAGT-ATGCCCCGAAT--GTGCCGGGCGACACGCGGGCTACAATGGCCGAGACAGTGGGAC--GCT------------------------ACC----CC   [912]
H.HALO                      TCAGT-ATGCCCCGAAT--GGGCTGGGCAACACGCGGGCTACAATGGTCGAGACAATGGGAA--GCC------------------------ACT----CC   [911]
H._cutirubrum               TCAGT-ATGCCCCGAAT--GGGCTGGGCAACACGCGGGCTACAATGGTCGAGACAATGGGAA--GCC------------------------ACT----CC   [912]
AN._nidulans                TCATC-ATGCCCCTTAC--ATCCTGGGCTACACACGTACTACAATGCTCCGGACAGCGAGAC--GCG------------------------AAG----CC   [924]
HE.CHL                      TCATC-ATGCCCCTTAT--GTCTTGGGCTACACACGTGCTACAATGGGCGGTACAAACCGAA--GCG------------------------AAG----CC   [911]
Bc._subtilis                TCATC-ATGCCCCTTAT--GACCTGGGCTACACACGTGCTACAATGGACAGAACAAAGGGCA--GCG------------------------AAA----CC   [947]
MY.CAP                      TCATC-ATGCCCCTTAT--GTCCTGGGCTACACACGTGCTACAATGGCTGGTACAAAGAGTT--GCA------------------------ATC----CT   [930]
E._coli                     TCATC-ATGGCCCTTAC--GACCAGGGCTACACACGTGCTACAATGGCGCATACAAAGAGAA--GCG------------------------ACC----TC   [945]
MYX.XA                      TCCTC-ATGGCCTTTAT--GACCAGGGCTACACACGTGCTACAATGGCCGGTACAGAGCGTT--GCC------------------------AAC----CC   [942]
P.TEST                      TCCTC-ATGGCCCTTAT--AGGTGGGGCTACACACGTCATACAATGGCTGGTACAAAGGGTT--GCC------------------------AAC----CC   [945]
AG.TUM                      TCCTC-ATGGCCCTTAC--GGGCTGGGCTACACACGTGCTACAATGGTGGTGACAGTGGGCA--GCG------------------------AGA----CA   [925]
DV.DES                      TCATC-ATGGCCCTTAC--GCCTAGGGCTACACACGTACTACAATGGCGCGCACAAAGGGGA--GCG------------------------AGA----CC   [946]
BA.FRG                      TCAGC-ACGGCCCTTAC--GTCCGGGGCTACACACGTGTTACAATGGGGGGTACAGAAGGCA--GCT------------------------AGC----GG   [940]
'Zea_mays_(chloroplast)'    TCATC-ATGCCCCTTAT--GCCCTGGGCGACACACGTGCTACAATGGGCGGGACAAAGGGTC--GCG------------------------ATC----TC   [921]
T.AMIT                      TCCGC-ATGGCCCTTAT--GGGCTGGGCCACACACGTGCTACAATGGCAATGACAATGGGAA--GCA------------------------AGG----CT   [936]

[                                    1910      1920      1930      1940      1950      1960      1970      1980      1990      2000]
[                                    .         .         .         .         .         .         .         .         .         .]

Homo_sapiens                -GGCAGGCGCGGG-TAACCCGTTGAA-CCCCATTCGTGATGGGGATCGGGGATTGCAATTATTCCCCAT-GAACGAGGAATTCCCAGTAAGTGCGGGTCA   [1216]
Rattus_norvegicus           -GGCAGGCGCGGG-TAACCCGTTGAA-CCCCATTCGTGATGGGGATCGGGGATTGCAATTATTCCCCAT-GAACGAGGAATTCCCAGTAAGTGCGGGTCA   [1215]
Xenopus_laevis              -GACAGGTGCGGG-TAACCCGCTGAA-CCCCGTTCGTGATAGGGATCGGGGATTGCAATTATTTCCCAT-GAACGAGGAATTCCCAGTAAGTGCGGGTCA   [1208]
A._salina                   -GAGAGGACCGGG-TAACC-GCTGAA-CCTCTTCCGTGGTTGGGATTGGGGACTGCAAGGATC-CCCAT-GAACCAGGAATCCCTAGTAGGCGCAAGTCA   [1201]
S._cerevisiae               -GAGAGGTCTTGG-TAATCTTGTGAA-ACTCCGTCGTGCTGGGGATAGAGCATTGTAATTATTGCTCTT-CAACGAGGAATTCCTAGTAAGCGCAAGTCA   [1199]
P.MICA                      -GATAGGGTTTGGGTAATCTTTTTAA-ATCGCATCGTGATGGGGATAGATTATTGCAATTATTAATCTT-CAACGAGGAATTCCTAGTAAGCGCGAGTCA   [1201]
D.DISC                      -GGAAGGATTGGG-TAATCATTTGAA-TTTCCTACGTAACTGGGCTTGATCTTTGTAATTATTGATCAT-AAACGAGGAATTCCTTGTAAGCGTAAGTCA   [1281]
T.BRUC                      -AAAAGAGCGGGG-AAACCACGGAATCACGTAGACCCACTTGGGACCGAGTATTGCAATTATTGGTCGCGCAACGAGGAATGTCTCGTAGGCGCAGCTCA   [1603]
E.GRAC                      TGAAGAGGCTGGG-AAATCCTGCAAG-CCTGTGACGTACTGGGGATAGATGGTTGCAACTGTCTGCCTT-GAACGTGGAATGCCTAGTATGCCTGGGTCA   [1606]
Zea_mays                    -GACAGGC-CGGT-AATCTTGGGAAA-TTTCATGCGTGATGGGGATAGATCATTGCAATTGTTGGTCTT-CAACGAGGAATGCCTAGTAAGCGCGAGTCA   [1202]
D._mobilis                  -GAAAGGGGAGGC-GAATCCCTC-AA-ACCCCGCCGTGGTTGGGATCGAGGGCTGCAACTCGCCCTCGT-GAACGAGGAATCCCTAGTAACCGCGCGTCA   [997]
S._solfataricus             -GAAAGGGGGAGC-CAATCCTT--AA-ACCCTGCCGCAGTTGGGATCGAGGGCTGAAACCCGCCCTCGT-GAACGAGGAATCCCTAGTAACCGCGGGTCA   [994]
T._tenax                    -GAAAGGGGGAGG-CAATCCCGT-AA-ACCCCGCCCCAGTAGGGATCGAGGGCTGCAACTCGCCCTCGT-GAACGTGGAATCCCTAGTAACCGCGTGTCA   [998]
M._vannielii                -GAAAAGGGACGC-GAATCTCCG-AA-ACCTAGTCGTAGTTCGGATCGTGGGCTGTAACTCGCCCACGT-GAAGCTGGAATCCGTAGTAATCGCAGTTCA   [998]
MB._formicicum              -GAAAGGTGGAGG-TAATCTCCT-AA-ACCTGGCCTTAGTTCGGATTGAGGGCTGTAACTCGCCCTCAT-GAAGCTGGAATGCGTAGTAATCGCGTGTCA   [1001]
MS._hungatei                -GAGAGGTGAGGA-TAATCTCCT-AA-ACCTGTCCGAAGTTCGGATTGCGGGTTGTAACTCACCCGCAT-GAAGCTGGAATCCGTAGTAATCGCGTTTCA   [974]
H._volacanii                -GAAAGAGAACGC-TAATCTCCT-AA-ACTCGATCGTAGTTCGGATTGAGGGCTGAAACTCGCCCTCAT-GAAGCTGGATTCGGTAGTAATCGCATTTCA   [1006]
HC._morrhuae                -GAGAGGGGACGC-TAATCTCCT-AA-CCTCGGTCGTAGTTCGGATTGCGGGTTGAAACCCACCCGCAT-GAAGCTGGATTCGGTAGTAATCGCATTTCA   [1007]
H.HALO                      -GAGAGGAGGCGC-TAATCTCCT-AA-ACTCGATCGTAGTTCGGATTGAGGGCTGAAACTCGCCCTCAT-GAAGCTGGATTCGGTAGTAATCGCGTGTCA   [1006]
H._cutirubrum               -GAGAGGAGGCGC-TAATCTCCT-AA-ACTCGATCGTAGTTCGGATTGAGGGCTGAAACTCGCCCTCAT-GAAGCTGGATTCGGTAGTAATCGCGTGTCA   [1007]
AN._nidulans                -GCGAGGTGAAGC-AAATCTCCC-AA-ACCGGGGCTCAGTTCAGATTGCAGGCTGCAACTCGCCTGCAT-GAAGGCGGAATCGCTAGTAATCGCAGGTCA   [1019]
HE.CHL                      -GAGAGGTGGAGC-GAACCGGAG-AA-AGCCGTTCCCAGTTCGGATTGCTCTCTGCAACTCGAGAGCAT-GAAGGCGGAATCGCTAGTAATCGCGGGTCA   [1006]
Bc._subtilis                -GCGAGGTTAAGC-CAATCCCAC-AA-ATCTGTTCTCAGTTCGGATCGCAGTCTGCAACTCGACTGCGT-GAAGCTGGAATCGCTAGTAATCGCGGATCA   [1042]
MY.CAP                      -GTGAAGGGGAGC-TAATCTCAA-AA-AACCAGTCTCAGTTCGGATTGAAGTCTGCAACTCGACTTCAT-GAAGCCGGAATCACTAGTAATCGCGAATCA   [1025]
E._coli                     -GCGAGAGCAAGC-GGACCTCAT-AA-AGTGCGTCGTAGTCCGGATTGGAGTCTGCAACTCGACTCCAT-GAAGTCGGAATCGCTAGTAATCGTGGATCA   [1040]
MYX.XA                      -GCGAGGGGGAGC-TAATCGCAT-AA-AACCGGTCTCAGTTCAGATTGGAGTCTGCAACTCGACTCCAT-GAAGGAGGAATCGCTAGTAATCGCAGATCA   [1037]
P.TEST                      -GCGAGGGGGAGC-TAATCCCAT-AA-AGCCAGTCGTAGTCCGGATCGCAGTCTGCAACTCGACTGCGT-GAAGTCGGAATCGCTAGTAATCGTGGATCA   [1040]
AG.TUM                      -GCGATGTCGAGC-TAATCTCCA-AA-AGCCAT-CTCAGTTCGGATTGCACTCTGCAACTCGAGTGCAT-GAAGTTGGAATCGCTAGTAATCGCAGATCA   [1019]
DV.DES                      -GCGAGGTGGAGC-CAATCCCAA-AA-AACGCGTCCCAGTCCGGATTGCAGTCTGCAACTCGACTGCAT-GAAGTTGGAATCGCTAGTAATTCGAGATCA   [1041]
BA.FRG                      -GTGACCGTATGC-TAATCCCA--AA-ATCCTCTCTCAGTTCGGATCGAAGTCTGCAACCCGACTTCGT-GAAGCTGGATTCGCTAGTAATCGCGCATCA   [1034]
'Zea_mays_(chloroplast)'    -GCGAGGGTGAGC-TAACTCCAA-AA-ACCCGTCCTCAGTTCGGATTGCAGGCTGCAACTCGCCTGCAT-GAAGCAGGAATCGCTAGTAATCGCCGGTCA   [1016]
T.AMIT                      -GTAAGGCGGAGC-GAATC-CGG-AA-AGATTGCCTCAGTTCGGATTGTTCTCTGCAACTCGGGAACAT-GAAGTTGAAATCGCTAGTAATCGCGGATCA   [1030]

[                                    2010      2020      2030      2040      2050      2060      2070      2080      2090      2100]
[                                    .         .         .         .         .         .         .         .         .         .]

Homo_sapiens                TA-AGCTTGCGTTGATTAAGTCCCTGCCCTTTGTACACACCGCCCGTCGCTACTACCGATTGGATGGTTTAGCTTGACTATCTAGAGGAAGTAAAAGTCG   [1315]
Rattus_norvegicus           TA-AGCTTGCGTTGATTAAGTCCCTGCCCTTTGTACACACCGCCCGTCGCTACTACCGATTGGATGGTTTAGCTTGACTATCTAGAGGAAGTAAAAGTCG   [1314]
Xenopus_laevis              TA-AGCTCGCGTTGATTAAGTCCCTGCCCTTTGTACACACCGCCCGTCGCTACTACCGATTGGATGGTTTAGCTTGACTATCTAGAGGAAGTAAAAGTCG   [1307]
A._salina                   TT-AGCTTGCGTCGATTACGTCCCTGCCCTTTGTACACACCGCCCGTCGCTACTACCGATTGAATGATTTAGCTTGATCCTTTAGAGGAAGTAAAAGTCG   [1300]
S._cerevisiae               TC-AGCTTGCGTTGATTACGTCCCTGCCCTTTGTACACACCGCCCGTCGCTAGTACCGATTGAATGGCTTAGCTTGGTCATTTGGAGGAACTAAAAGTCG   [1298]
P.MICA                      TC-AGCTCGTGCTGATTACGTCCCTGCCCTTTGTACACACCGCCCGTCGCTCCTACCGATTGAGTG-----ACCTTATCACTTAGAGGAAGGAGAAGTCG   [1295]
D.DISC                      TT-ACCTTATGCTGAATATGTCCCTGCCCTTTGTACACACCGCCCGTCGCTCCTACCGATCGAATGATACGGTCTCATTGTTTAGAGGAAGGAGAAGTCG   [1380]
T.BRUC                      TC-AAACTGTGCCGATTACGTCCCTGCCATTTGTACACACCGCCCGTCGTTGTTTCCGAT--GATGGTGCAAATTGCTTCAATAGAGGAAGCAAAAGTCG   [1700]
E.GRAC                      TC-AGCCCAGACCGATTGTGTCCCTGCCATTTGTACACACCGCCCGTCGTTGCTACCGATGG--TGGCTGGAGTCCAGCCACTAGAGGAAGCAAAAGTCG   [1703]
Zea_mays                    TC-AGCTCGCGTTGACTACGTCCCTGCCCTTTGTACACACCGCCCGTCGCTCCTACCGATTGAATGGTCCGGCCTTATCATTTAGAGGAAGGAGAAGTCG   [1301]
D._mobilis                  AC-ATCGCGCGGTGAATACGTCCCTGCTCCTTGCACACACCGCCCGTCGCTCCACCCGAGGGGAGG-GGGAGCTCCCCCTCCCTGAGGGGGGAGAAGTCG   [1095]
S._solfataricus             AC-AACCCGCGGTGAATACGTCCCTGCTCCTTGCACACACCGCCCGTCGCTCCACCCGAGCGCGAA-AGGGGCTCCTTTCCCGCGAGGGGGGAGAAGTCG   [1092]
T._tenax                    CC-AACGCGCGGTGAATACGTCCCTGCCCCTTGCACACACCGCCCGTCGCACCACCCGAGGGAGTT-CTCTGCAGAGAACTCCCGAGGGGGGTGAAGTCG   [1096]
M._vannielii                TA-ATACTGCGGTGAATGTGTCCCTGCTCCTTGCACACACCGCCCGTCACACCACCCGAGTTGGGT-TCAGGCCTGGGCTCAGCGAGGGGGGTGAAGTCG   [1096]
MB._formicicum              TA-ACCGCGCGGTGAATACGTCCCTGCTCCTTGCACACACCGCCCGTCACGCCACCCAAAAAGGGT-TTGGATCTAGGTTCTTTGAGGAGGGCGAAGTCG   [1099]
MS._hungatei                AC-ATAGCGCGGTGAATATGTCCCTGCTCCTTGCACACACCGCCCGTCAAACCACCCGAGTGAGGT-CTTGATCTGGGTTTTGCAAGGGGGGTTAAGTCG   [1072]
H._volacanii                AT-AGAGTGCGGTGAATACGTCCCTGCTCCTTGCACACACCGCCCGTCAAAGCACCCGAGTGAGGT-CCGGA-------TTCGCAAGGGGGCTTAAGTCG   [1097]
HC._morrhuae                GA-AGAGTGCGGTGAATACGTCCCTGCTCCTTGCACACACCGCCCGTCAAATCACCCGAGTGAGGT-CCGGA-------TTCGCAAGGGGGATTAAGTCG   [1098]
H.HALO                      GC-AGCGCGCGGTGAATACGTCCCTGCTCCTTGCACACACCGCCCGTCAAATCACCCGAGTGGGGT-TCGGA-------TCCGCAAGGGGGATTAAGTCG   [1097]
H._cutirubrum               GC-AGCGCGCGGTGAATACGTCCCTGCTCCTTGCACACACCGCCCGTCAAATCACCCGAGTGGGGT-TCGGA-------TCCGCAAGGGGGATTAAGTCG   [1098]
AN._nidulans                GC-ATACTGCGGTGAATACGTTCCCGGGCCTTGTACACACCGCCCGTCACACCATGGAAGTTGGCC-ATGCCGGTAGGGCTGATGACTGGGGTGAAGTCG   [1117]
HE.CHL                      GC-ATACCGCGGTGAATACGTTCCCGGGCCTTGTACACACCGCCCGTCACACCACGAAAGTCGGCA-ACACCGGTGGGGTCGATGATTGGGGTGAAGTCG   [1104]
Bc._subtilis                GC-ATGCCGCGGTGAATACGTTCCCGGGCCTTGTACACACCGCCCGTCACACCACGAGAGTTTGTA-ACACCGGTGGGACAGATGATTGGGGTGAAGTCG   [1140]
MY.CAP                      GCTATGTCGCGGTGAATACGTTCTCGGGTCTTGTACACACCGCCCGTCACACCATGAGAGTTGGTA-ATACCGGTAGGACTAGCGATTGGGGTGAAGTCG   [1124]
E._coli                     GA-ATGCCACGGTGAATACGTTCCCGGGCCTTGTACACACCGCCCGTCACACCATGGGAGTGGGTT-GCAAATTTGTGATTCATGACTGGGGTGAAGTCG   [1138]
MYX.XA                      GC-ACGCTGCGGTGAATACGTTCCCGGGCCTTGTACACACCGCCCGTCACACCATGGGAGTCGATT-GCTCCGGAGTGGTCGGTAACTGGGGTGAAGTCG   [1135]
P.TEST                      GA-ATGTCACGGTGAATACGTTCCCGGGTCTTGTACACACCGCCCGTCACACCATGGGAGCGGGTC-TCGCCGGCGGGGTTCGTGACTGGGGTGAAGTCG   [1138]
AG.TUM                      GC-ATGCTGCGGTGAATACGTTCCCGGGCCTTGTACACACCGCCCGTCACACCATGGGAGTTGGTT-TTACCGGTAGGGTCAGCGACTGGGGTGAAGTCG   [1117]
DV.DES                      GC-ATGCTCGGGTGAATGCGTTCCCGGGCCTTGTACACACCGCCCGTCACACCACGAAAGTCGGTT-TTACCGGTAGGGCCGATGATTGGGGTGAAGTCG   [1139]
BA.FRG                      GCCACGGCGCGGTGAATACGTTCCCGGGCCTTGTACACACCGCCCGTCAAGCCATGGGAGCCGGGG-GTACCGGTAAAACTGGTGACTGGGGCTAAGTCG   [1133]
'Zea_mays_(chloroplast)'    GCCATACGGCGGCGAATCCGTTCCCGGGCCTTGTACACACCGCCCGTCACACTATAGGAGCTGGCC-AGGTTGGCTAGGCTTGCGACTGGAGTGAAGTCG   [1115]
T.AMIT                      GC-ATGCCGCGGTGAATATGTACCCGGGCCCTGTACACACCGCCCGTCACACCCTGGGAATTGGTT-TCGCCGGTGGGGTCTTCGACTGGGGTGAAGTCG   [1128]

[                                    2110      2120      2130      2140    ]
[                                    .         .         .         .       ]

Homo_sapiens                TAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTA-------   [1355]
Rattus_norvegicus           TAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTA-------   [1354]
Xenopus_laevis              TAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTA-------   [1347]
A._salina                   TAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTA-------   [1340]
S._cerevisiae               TAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTA-------   [1338]
P.MICA                      TAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTC-------   [1335]
D.DISC                      TAACAAGGTATCCGTAGGTGAACCTGCGGATGGATCATTTT------   [1421]
T.BRUC                      TAACAAGGTAGCTGTAGGTGAACCTGCAGCTGGATCATTT-------   [1740]
E.GRAC                      TAACAAGGTTGCTGTAGGTGAACCTGCAGCAGGATCATTG-------   [1743]
Zea_mays                    TAACAAGGTTTCCGTAGGTGAACCTGCGGAAGGATCATTG-------   [1341]
D._mobilis                  TAACAAGGTAGCCGTACCGGAAGGTGCGGCTGGATCACCTCCT----   [1138]
S._solfataricus             TAACAAGGTAGCCGTAGGGGAACCTGCGGCTGGATCACCTCA-----   [1134]
T._tenax                    TAACAAGGTAGCCGTAGGGGAACCTGCTTCTGGATCACCTCC-----   [1138]
M._vannielii                TAACAAGGTAGCCGTAGGGGAACCTGCGGCTGGATCACCTCC-----   [1138]
MB._formicicum              TAACAAGGTAGCCGTAGGGGAACCTGCGGCTGGATCACCTCCT----   [1142]
MS._hungatei                TAACAAGGTAGCCGTAGGGGAATCTGCGGCTGGATCACCTCCT----   [1115]
H._volacanii                TAACAAGGTAGCCGTAGGGGAATCTGCGGCTGGATCACCTCCT----   [1140]
HC._morrhuae                TAACAAGGTAGCCGTAGGGGAATCTGCGGCTGGATCACCTCCT----   [1141]
H.HALO                      TAACAAGGTAGCCGTAGGGGAATCTGCGGCTGGATCACCTCCT----   [1140]
H._cutirubrum               TAACAAGGTAGCCGTAGGGGAATCTGCGGCTGGATCACCTCCT----   [1141]
AN._nidulans                TAACAAGGTAGCCGTACCGGAAGGTGTGGCTGGATCACCTCCTTT--   [1162]
HE.CHL                      TAACAAGGTAGCCGTATCGGAAGGTGCGGCTGGATCACCTCCTTTCT   [1151]
Bc._subtilis                TAACAAGGTAGCCGTATCGGAAGGTGCGGCTGGATCACCTCCTTTCT   [1187]
MY.CAP                      TAACAAGGTATCCGTACGGGAACGTGCGGATGGATCACCTCCTTTCT   [1171]
E._coli                     TAACAAGGTAACCGTAGGGGAACCTGCGGTTGGATCACCTCCTTA--   [1183]
MYX.XA                      TAACAAGGTAGCCGTAGGGGAACCTGCGGCTGGATCACCTCCTTTCT   [1182]
P.TEST                      TAACAAGGTAGCCGTATCGGAAGGTGCGGCTGGATCACCTCCTTTCT   [1185]
AG.TUM                      TAACAAGGTAGCCGTAGGGGAACCTGCGGCTGGATCACCTCCTTTCT   [1164]
DV.DES                      TAACAAGGTAGCCGTAGGGGAACCTGCGGCTGGATCACCTCCTTT--   [1184]
BA.FRG                      TAACAAGGTAGCCGTACCGGAAGGTGCGGCTGGAACACCTCCTTTCT   [1180]
'Zea_mays_(chloroplast)'    TAACAAGGTAGCCGTACTGGAAGGTGCGGCTGGATCACCTCCTTT--   [1160]
T.AMIT                      TAACAAGGTAGCCGTAGGGGAACCTGTGGCTGGATTGAATCC-----   [1170]
;
END;


BEGIN CODONS;
CODESET * UNTITLED = Universal: all ;
END;

BEGIN ASSUMPTIONS;
	OPTIONS  DEFTYPE=unord PolyTcount=MINSTEPS ;
END; 

BEGIN TREES; 

	TRANSLATE
		1	Homo_sapiens,
		2	Rattus_norvegicus,
		3	Xenopus_laevis,
		4	A._salina,
		5	S._cerevisiae,
		6	P.MICA,
		7	D.DISC,
		8	T.BRUC,
		9	E.GRAC,
		10	Zea_mays,
		11	D._mobilis,
		12	S._solfataricus,
		13	T._tenax,
		14	M._vannielii,
		15	MB._formicicum,
		16	MS._hungatei,
		17	H._volacanii,
		18	HC._morrhuae,
		19	H.HALO,
		20	H._cutirubrum,
		21	AN._nidulans,
		22	HE.CHL,
		23	Bc._subtilis,
		24	MY.CAP,
		25	E._coli,
		26	MYX.XA,
		27	P.TEST,
		28	AG.TUM,
		29	DV.DES,
		30	BA.FRG,
		31	'Zea_mays_(chloroplast)',
		32	T.AMIT
	;
	TREE mp_tree_1 =  [&R] ((14,(15,(16,(18,(17,(19,20)))))),((13,(11,12)),(((8,9),(7,(5,(6,(10,(4,(3,(1,2)))))))),(30,(((21,31),(24,(22,23))),((25,27),(26,(29,(28,32)))))))));
	TREE mp_tree_2 =  [&R] ((14,(15,(16,(18,(17,(19,20)))))),((13,(11,12)),(((8,9),(7,(5,(6,(10,(4,(3,(1,2)))))))),(30,(((21,31),(24,(22,23))),((26,(25,27)),(29,(28,32))))))));
	TREE  * UNTITLED =  [&R] ((14,(15,(16,(18,(17,(19,20)))))),((13,(11,12)),(((8,9),(7,(5,(6,(10,(4,(3,(1,2)))))))),(30,(((21,31),(24,(22,23))),((25,27),(26,(29,(28,32)))))))));

END;



BEGIN MACCLADE;
Version 3.05;
LastModified -1425155107;
Singles 1000&/0;
END;
