query_sequence,base_type,reverse_complement,genome_start,genome_end,polyprotein,start,end,region_names,similarity_to_hxb2,alignment,hxb2_sequence
AGCAATCAGATGGTCAGCCAAAATTGCCCTATAGTGCAGAACATCCAGGGGCAAGTGGTACATCAGGCCATATCACCTAGAACTTTAAATGCA,nucleotide,0,1162,1251,Gag,373,462,"Gag p17 p24",94.6," Query AGCAATCAGA TGGTCAGCCA AAATTGCCCT ATAGTGCAGA ACATCCAGGG  50
       ::::::::    ::::::::: ::::: :::: :::::::::: :::::::::: 
  HXB2 AGCAATCA-- -GGTCAGCCA AAATTACCCT ATAGTGCAGA ACATCCAGGG  1208
 Query GCAAGTGGTA CATCAGGCCA TATCACCTAG AACTTTAAAT GCA  93
       :::: ::::: :::::::::: :::::::::: :::::::::: ::: 
  HXB2 GCAAATGGTA CATCAGGCCA TATCACCTAG AACTTTAAAT GCA  1251",AGCAATCA---GGTCAGCCAAAATTACCCTATAGTGCAGAACATCCAGGGGCAAATGGTACATCAGGCCATATCACCTAGAACTTTAAATGCA
