[
   {
      "query" : "sequence_1",
      "query_sequence" : "AGCAATCAGATGGTCAGCCAAAATTGCCCTATAGTGCAGAACATCCAGGGGCAAGTGGTACATCAGGCCATATCACCTAGAACTTTAAATGCA",
      "base_type" : "nucleotide",
      "reverse_complement" : "0",
      "alignment" : "\n Query AGCAATCAGA TGGTCAGCCA AAATTGCCCT ATAGTGCAGA ACATCCAGGG  50\n       ::::::::    ::::::::: ::::: :::: :::::::::: :::::::::: \n  HXB2 AGCAATCA-- -GGTCAGCCA AAATTACCCT ATAGTGCAGA ACATCCAGGG  1208\n\n Query GCAAGTGGTA CATCAGGCCA TATCACCTAG AACTTTAAAT GCA  93\n       :::: ::::: :::::::::: :::::::::: :::::::::: ::: \n  HXB2 GCAAATGGTA CATCAGGCCA TATCACCTAG AACTTTAAAT GCA  1251\n\n  ",
      "hxb2_sequence" : "AGCAATCA---GGTCAGCCAAAATTACCCTATAGTGCAGAACATCCAGGGGCAAATGGTACATCAGGCCATATCACCTAGAACTTTAAATGCA",
      "similarity_to_hxb2" : "94.6",
      "start" : "373",
      "end" : "462",
      "genome_start" : "1162",
      "genome_end" : "1251",
      "polyprotein" : "Gag",
      "region_names" : [
         "Gag",
         "p17",
         "p24"
      ],
      "regions" : [
         {
            "cds" : "Gag",
            "aa_from_protein_start" : [ "125", "154" ],
            "na_from_cds_start" : [ "373", "462" ],
            "na_from_hxb2_start" : [ "1162", "1251" ],
            "na_from_query_start" : [ "1", "93" ],
            "protein_translation" : "SNQMVSQNCPIVQNIQGQVVHQAISPRTLNA"
         },
         {
            "cds" : "p17",
            "aa_from_protein_start" : [ "125", "132" ],
            "na_from_cds_start" : [ "373", "396" ],
            "na_from_hxb2_start" : [ "1162", "1185" ],
            "na_from_query_start" : [ "1", "27" ],
            "protein_translation" : "SNQMVSQNC"
         },
         {
            "cds" : "p24",
            "aa_from_protein_start" : [ "1", "22" ],
            "na_from_cds_start" : [ "1", "66" ],
            "na_from_hxb2_start" : [ "1186", "1251" ],
            "na_from_query_start" : [ "28", "93" ],
            "protein_translation" : "PIVQNIQGQVVHQAISPRTLNA"
         }
      ]
   }
]
