[
   {
      "query" : "sequence_1",
      "query_sequence" : "SLYNTVAVLYYVHQR",
      "base_type" : "amino acid",
      "reverse_complement" : "0",
      "alignment" : "\n Query SLYNTVAVLY YVHQR  15\n       :::::::.::  ::::    \n  HXB2 SLYNTVATLY CVHQR\n\n  ",
      "hxb2_sequence" : "SLYNTVATLYCVHQR",
      "similarity_to_hxb2" : "86.7",
      "start" : "77",
      "end" : "91",
      "genome_start" : "1018",
      "genome_end" : "1062",
      "polyprotein" : "Gag",
      "region_names" : [
         "Gag",
         "p17"
      ],
      "regions" : [
         {
            "cds" : "Gag",
            "aa_from_cds_start" : [
               "229",
               "273"
            ],
            "aa_from_polyprotein_start" : null,
            "aa_from_protein_start" : [
               "77",
               "91"
            ],
            "aa_from_query_start" : [
               "1",
               "15"
            ],
            "na_from_hxb2_start" : [
               "1018",
               "1062"
            ]
         },
         {
            "cds" : "p17",
            "aa_from_cds_start" : [
               "229",
               "273"
            ],
            "aa_from_polyprotein_start" : null,
            "aa_from_protein_start" : [
               "77",
               "91"
            ],
            "aa_from_query_start" : [
               "1",
               "15"
            ],
            "na_from_hxb2_start" : [
               "1018",
               "1062"
            ]
         }
      ]
   },
   {
      "query" : "sequence_2",
      "query_sequence" : "TCATTATATAATACAGTAGCAACCCTCTATTGTGTGCATCAAAGG",
      "base_type" : "nucleotide",
      "reverse_complement" : "0",
      "alignment" : "\n Query TCATTATATA ATACAGTAGC AACCCTCTAT TGTGTGCATC AAAGG  45\n       :::::::::: :::::::::: :::::::::: :::::::::: ::::: \n  HXB2 TCATTATATA ATACAGTAGC AACCCTCTAT TGTGTGCATC AAAGG  1062\n\n  ",
      "hxb2_sequence" : "TCATTATATAATACAGTAGCAACCCTCTATTGTGTGCATCAAAGG",
      "similarity_to_hxb2" : "100.0",
      "start" : "229",
      "end" : "273",
      "genome_start" : "1018",
      "genome_end" : "1062",
      "polyprotein" : "Gag",
      "region_names" : [
         "Gag",
         "p17"
      ],
      "regions" : [
         {
            "cds" : "Gag",
            "aa_from_protein_start" : [
               "77",
               "91"
            ],
            "na_from_cds_start" : [
               "229",
               "273"
            ],
            "na_from_hxb2_start" : [
               "1018",
               "1062"
            ],
            "na_from_query_start" : [
               "1",
               "45"
            ],
            "protein_translation" : "SLYNTVATLYCVHQR"
         },
         {
            "cds" : "p17",
            "aa_from_protein_start" : [
               "77",
               "91"
            ],
            "na_from_cds_start" : [
               "229",
               "273"
            ],
            "na_from_hxb2_start" : [
               "1018",
               "1062"
            ],
            "na_from_query_start" : [
               "1",
               "45"
            ],
            "protein_translation" : "SLYNTVATLYCVHQR"
         }
      ]
   }
]
